Wall clock time and date at job start Tue Mar 31 2020 22:27:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52999 * 109.46833 * 2 1
4 4 C 1.50693 * 109.47288 * 119.99701 * 2 1 3
5 5 S 1.70949 * 125.59006 * 308.09884 * 4 2 1
6 6 C 1.70771 * 91.12979 * 180.19690 * 5 4 2
7 7 N 1.28649 * 110.55947 * 359.80326 * 6 5 4
8 8 C 1.33563 * 115.76546 * 0.02562 * 7 6 5
9 9 C 1.47270 * 123.13984 * 180.02562 * 8 7 6
10 10 O 1.21632 * 119.99709 * 185.04766 * 9 8 7
11 11 N 1.34780 * 120.00235 * 5.03539 * 9 8 7
12 12 C 1.46491 * 120.00141 * 180.02562 * 11 9 8
13 13 C 1.53007 * 109.47178 * 180.02562 * 12 11 9
14 14 H 1.08993 * 110.91476 * 308.89963 * 13 12 11
15 15 C 1.55127 * 110.90523 * 72.97573 * 13 12 11
16 16 N 1.47426 * 104.72030 * 155.27681 * 15 13 12
17 17 C 1.36940 * 125.64794 * 155.81540 * 16 15 13
18 18 H 1.08005 * 119.99834 * 346.14791 * 17 16 15
19 19 C 1.38809 * 119.99730 * 166.14323 * 17 16 15
20 20 N 1.31623 * 119.99353 * 135.82877 * 19 17 16
21 21 Si 1.86799 * 120.00414 * 315.82615 * 19 17 16
22 22 H 1.48497 * 109.47117 * 0.02562 * 21 19 17
23 23 H 1.48508 * 109.46855 * 119.99945 * 21 19 17
24 24 H 1.48493 * 109.47201 * 240.00035 * 21 19 17
25 25 C 1.47022 * 108.70495 * 335.55007 * 16 15 13
26 26 C 1.54329 * 107.26666 * 1.28893 * 25 16 15
27 27 H 1.09001 * 110.71607 * 140.56060 * 26 25 16
28 28 O 1.42904 * 110.71747 * 263.64920 * 26 25 16
29 29 H 1.09005 * 109.47204 * 299.99718 * 1 2 3
30 30 H 1.08994 * 109.47475 * 60.00137 * 1 2 3
31 31 H 1.09004 * 109.46870 * 180.02562 * 1 2 3
32 32 H 1.08997 * 109.46923 * 240.00273 * 2 1 3
33 33 H 1.08997 * 109.47282 * 180.02562 * 3 2 1
34 34 H 1.09003 * 109.47240 * 300.00178 * 3 2 1
35 35 H 1.09005 * 109.47425 * 59.99834 * 3 2 1
36 36 H 1.07997 * 124.72194 * 179.77395 * 6 5 4
37 37 H 0.97000 * 119.99641 * 0.02562 * 11 9 8
38 38 H 1.08999 * 109.47342 * 60.00440 * 12 11 9
39 39 H 1.09003 * 109.47042 * 300.00186 * 12 11 9
40 40 H 1.09004 * 110.49838 * 36.43353 * 15 13 12
41 41 H 1.09002 * 110.34331 * 274.03599 * 15 13 12
42 42 H 0.96998 * 120.00513 * 5.08379 * 20 19 17
43 43 H 1.08993 * 109.87945 * 120.70378 * 25 16 15
44 44 H 1.08994 * 109.88401 * 241.71658 * 25 16 15
45 45 H 0.96696 * 113.99976 * 298.54689 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0324 -0.7103 1.2304
5 16 1.5554 -0.3748 2.8374
6 6 2.5912 -1.5937 3.4352
7 7 3.2128 -2.1724 2.4689
8 6 2.9324 -1.7191 1.2442
9 6 3.5496 -2.2642 0.0231
10 8 3.3230 -1.7486 -1.0549
11 7 4.3656 -3.3341 0.1003
12 6 4.9799 -3.8759 -1.1142
13 6 5.8525 -5.0792 -0.7512
14 1 6.5406 -4.8312 0.0568
15 6 4.9778 -6.3072 -0.3859
16 7 5.8379 -7.4736 -0.6565
17 6 5.7124 -8.7089 -0.0790
18 1 5.0889 -8.8361 0.7937
19 6 6.3865 -9.7974 -0.6151
20 7 7.0133 -10.6394 0.1789
21 14 6.4042 -10.0672 -2.4634
22 1 5.6319 -8.9873 -3.1287
23 1 7.8060 -10.0465 -2.9533
24 1 5.7894 -11.3818 -2.7777
25 6 6.8486 -7.0928 -1.6540
26 6 6.6195 -5.6048 -1.9933
27 1 7.5705 -5.0846 -2.1080
28 8 5.8270 -5.4720 -3.1750
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 3.1299 1.4426 -0.0005
34 1 1.6766 1.9564 -0.8900
35 1 1.6766 1.9564 0.8900
36 1 2.7085 -1.8437 4.4793
37 1 4.5461 -3.7453 0.9601
38 1 5.5956 -3.1086 -1.5834
39 1 4.1993 -4.1895 -1.8074
40 1 4.0858 -6.3402 -1.0116
41 1 4.7019 -6.2758 0.6682
42 1 6.9432 -10.5421 1.1415
43 1 7.8476 -7.2290 -1.2400
44 1 6.7328 -7.7019 -2.5504
45 1 6.2318 -5.8550 -3.9652
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000958585062.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:27:17
Heat of formation + Delta-G solvation = -44.698350 kcal
Electronic energy + Delta-G solvation = -27325.581658 eV
Core-core repulsion = 23469.486478 eV
Total energy + Delta-G solvation = -3856.095181 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = -9.69 seconds
Orbital eigenvalues (eV)
-41.72246 -40.34768 -39.45977 -36.94175 -36.51235 -35.96055 -34.25711 -32.01787
-30.78660 -29.58539 -28.10150 -27.75300 -26.44038 -24.88417 -23.34030 -22.48701
-22.43386 -21.49240 -20.69093 -19.72251 -19.01140 -18.45099 -17.72209 -17.05139
-16.79719 -16.69668 -16.25689 -16.06627 -15.71110 -15.38291 -15.26975 -15.17107
-14.97891 -14.70716 -14.53504 -14.33231 -14.00816 -13.93178 -13.44396 -13.12971
-13.09205 -12.98603 -12.78637 -12.46945 -12.43380 -12.23131 -12.22221 -12.17834
-11.90681 -11.70126 -11.42409 -10.89570 -10.83952 -10.71767 -10.42668 -10.34316
-10.26489 -9.87094 -9.23874 -8.71242 -5.33348 -0.49385 0.25587 0.62970
0.91547 1.39804 1.50548 1.70395 2.13922 2.26650 2.47833 2.84352
3.10660 3.20166 3.37184 3.58002 3.71853 3.75104 3.83905 3.87019
4.06293 4.15933 4.26874 4.30795 4.39680 4.51500 4.55760 4.65884
4.70444 4.76116 4.81502 4.86288 4.88279 4.92020 4.95006 5.06776
5.13270 5.20500 5.28833 5.29954 5.49214 5.65399 6.09948 6.23977
6.55995 6.79414 6.87197 7.07021 7.51651 8.20715 8.71212
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.019703 B = 0.002564 C = 0.002385
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1420.744426 B =10917.696532 C =11739.534884
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.053 4.053
3 C -0.134 4.134
4 C -0.184 4.184
5 S 0.280 5.720
6 C -0.011 4.011
7 N -0.470 5.470
8 C -0.034 4.034
9 C 0.588 3.412
10 O -0.559 6.559
11 N -0.707 5.707
12 C 0.155 3.845
13 C -0.093 4.093
14 H 0.108 0.892
15 C 0.139 3.861
16 N -0.618 5.618
17 C -0.355 4.355
18 H 0.038 0.962
19 C -0.054 4.054
20 N -0.919 5.919
21 Si 1.084 2.916
22 H -0.265 1.265
23 H -0.278 1.278
24 H -0.296 1.296
25 C 0.087 3.913
26 C 0.114 3.886
27 H 0.107 0.893
28 O -0.568 6.568
29 H 0.072 0.928
30 H 0.078 0.922
31 H 0.047 0.953
32 H 0.102 0.898
33 H 0.043 0.957
34 H 0.077 0.923
35 H 0.071 0.929
36 H 0.237 0.763
37 H 0.412 0.588
38 H 0.079 0.921
39 H 0.060 0.940
40 H 0.012 0.988
41 H 0.035 0.965
42 H 0.254 0.746
43 H 0.036 0.964
44 H 0.032 0.968
45 H 0.395 0.605
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.113 27.801 3.209 29.757
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.074 4.074
3 C -0.192 4.192
4 C -0.309 4.309
5 S 0.537 5.463
6 C -0.310 4.310
7 N -0.184 5.184
8 C -0.168 4.168
9 C 0.373 3.627
10 O -0.439 6.439
11 N -0.357 5.357
12 C 0.032 3.968
13 C -0.113 4.113
14 H 0.126 0.874
15 C 0.014 3.986
16 N -0.345 5.345
17 C -0.482 4.482
18 H 0.056 0.944
19 C -0.254 4.254
20 N -0.559 5.559
21 Si 0.910 3.090
22 H -0.191 1.191
23 H -0.204 1.204
24 H -0.224 1.224
25 C -0.038 4.038
26 C 0.054 3.946
27 H 0.124 0.876
28 O -0.376 6.376
29 H 0.091 0.909
30 H 0.097 0.903
31 H 0.066 0.934
32 H 0.120 0.880
33 H 0.062 0.938
34 H 0.096 0.904
35 H 0.090 0.910
36 H 0.253 0.747
37 H 0.248 0.752
38 H 0.097 0.903
39 H 0.079 0.921
40 H 0.030 0.970
41 H 0.053 0.947
42 H 0.064 0.936
43 H 0.054 0.946
44 H 0.050 0.950
45 H 0.245 0.755
Dipole moment (debyes) X Y Z Total
from point charges -10.332 27.613 2.359 29.577
hybrid contribution 0.313 -1.004 0.885 1.374
sum -10.019 26.609 3.244 28.617
Atomic orbital electron populations
1.21926 0.92316 1.02075 1.03674 1.20236 0.96983 0.96621 0.93546
1.21813 1.00665 0.93280 1.03457 1.25987 1.00765 1.00230 1.03934
1.82445 1.38526 1.32640 0.92672 1.28961 0.98727 0.98693 1.04585
1.66940 1.25142 1.28023 0.98302 1.20187 1.03802 1.00619 0.92227
1.17403 0.78331 0.79920 0.87044 1.90659 1.62680 1.61128 1.29444
1.45918 1.47204 1.30681 1.11908 1.20964 0.96032 0.93961 0.85883
1.22609 0.97667 0.93382 0.97604 0.87359 1.21728 0.92738 0.86613
0.97513 1.44795 1.32440 1.07704 1.49557 1.19572 1.33627 0.86660
1.08378 0.94370 1.26902 0.95443 0.93752 1.09257 1.71059 1.33449
1.46328 1.05072 0.83583 0.77215 0.75488 0.72752 1.19085 1.20447
1.22406 1.22487 0.92783 0.95845 0.92660 1.22679 0.94282 0.92579
0.85098 0.87574 1.86427 1.49765 1.82450 1.18985 0.90921 0.90307
0.93394 0.88044 0.93772 0.90433 0.91041 0.74692 0.75193 0.90303
0.92141 0.96987 0.94689 0.93604 0.94639 0.95034 0.75478
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.06 9.01 71.98 0.65 -1.41 16
2 C -0.05 -1.03 3.05 -11.54 -0.04 -1.07 16
3 C -0.13 -2.03 9.17 71.98 0.66 -1.37 16
4 C -0.18 -3.80 5.06 24.98 0.13 -3.67 16
5 S 0.28 3.40 22.35 -56.49 -1.26 2.14 16
6 C -0.01 -0.16 12.17 130.71 1.59 1.43 16
7 N -0.47 -11.05 10.13 -193.02 -1.96 -13.01 16
8 C -0.03 -0.90 6.70 40.56 0.27 -0.63 16
9 C 0.59 18.16 7.79 86.62 0.67 18.83 16
10 O -0.56 -19.34 13.88 -4.13 -0.06 -19.40 16
11 N -0.71 -20.92 5.50 -466.51 -2.57 -23.48 16
12 C 0.16 4.71 4.61 86.38 0.40 5.11 16
13 C -0.09 -3.00 2.99 -9.32 -0.03 -3.02 16
14 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16
15 C 0.14 5.86 6.65 86.93 0.58 6.44 16
16 N -0.62 -30.92 3.23 -691.54 -2.23 -33.15 16
17 C -0.35 -21.01 10.19 84.03 0.86 -20.16 16
18 H 0.04 2.46 8.06 -2.91 -0.02 2.43 16
19 C -0.05 -3.24 5.19 84.86 0.44 -2.80 16
20 N -0.92 -58.04 13.70 21.65 0.30 -57.74 16
21 Si 1.08 52.85 26.32 68.60 1.81 54.66 16
22 H -0.27 -12.14 6.29 99.48 0.63 -11.52 16
23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16
24 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16
25 C 0.09 3.65 5.59 86.73 0.48 4.13 16
26 C 0.11 3.54 4.07 31.78 0.13 3.67 16
27 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16
28 O -0.57 -17.01 12.27 -148.98 -1.83 -18.84 16
29 H 0.07 0.76 7.77 -2.38 -0.02 0.74 16
30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16
31 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16
32 H 0.10 2.68 5.06 -2.39 -0.01 2.67 16
33 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16
34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16
35 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16
36 H 0.24 1.66 8.06 -2.91 -0.02 1.64 16
37 H 0.41 11.73 8.00 -92.71 -0.74 10.99 16
38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16
39 H 0.06 2.11 7.55 -2.39 -0.02 2.09 16
40 H 0.01 0.55 7.91 -2.38 -0.02 0.53 16
41 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16
42 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16
43 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16
44 H 0.03 1.36 4.09 -2.39 -0.01 1.35 16
45 H 0.39 8.56 9.10 -74.06 -0.67 7.89 16
Total: -1.00 -78.28 375.89 -1.51 -79.79
By element:
Atomic # 1 Polarization: 24.05 SS G_CDS: -0.50 Total: 23.55 kcal
Atomic # 6 Polarization: -1.30 SS G_CDS: 6.80 Total: 5.49 kcal
Atomic # 7 Polarization: -120.93 SS G_CDS: -6.46 Total: -127.38 kcal
Atomic # 8 Polarization: -36.36 SS G_CDS: -1.88 Total: -38.24 kcal
Atomic # 14 Polarization: 52.85 SS G_CDS: 1.81 Total: 54.66 kcal
Atomic # 16 Polarization: 3.40 SS G_CDS: -1.26 Total: 2.14 kcal
Total: -78.28 -1.51 -79.79 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000958585062.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.090 kcal
(2) G-P(sol) polarization free energy of solvation -78.282 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.193 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.506 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.788 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.698 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = -9.69 seconds