Wall clock time and date at job start Tue Mar 31 2020 22:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46534 * 2 1 4 4 C 1.50694 * 109.47239 * 119.99922 * 2 1 3 5 5 N 1.29426 * 124.81031 * 300.04253 * 4 2 1 6 6 C 1.30943 * 117.36691 * 179.69560 * 5 4 2 7 7 C 1.35658 * 114.18843 * 0.48201 * 6 5 4 8 8 C 1.46686 * 126.12615 * 179.82197 * 7 6 5 9 9 O 1.21686 * 119.99783 * 179.69427 * 8 7 6 10 10 N 1.34773 * 120.00394 * 359.69297 * 8 7 6 11 11 C 1.46494 * 120.00561 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47606 * 179.97438 * 11 10 8 13 13 H 1.09002 * 110.88411 * 57.42720 * 12 11 10 14 14 C 1.54908 * 111.00745 * 293.54908 * 12 11 10 15 15 N 1.47414 * 104.83427 * 204.87537 * 14 12 11 16 16 C 1.36941 * 125.65304 * 204.08670 * 15 14 12 17 17 H 1.08008 * 119.99381 * 6.65072 * 16 15 14 18 18 C 1.38812 * 120.00565 * 186.64665 * 16 15 14 19 19 N 1.31618 * 119.99440 * 7.38012 * 18 16 15 20 20 Si 1.86793 * 120.00104 * 187.37813 * 18 16 15 21 21 H 1.48507 * 109.47081 * 84.99136 * 20 18 16 22 22 H 1.48502 * 109.47308 * 324.99111 * 20 18 16 23 23 H 1.48499 * 109.47100 * 204.98882 * 20 18 16 24 24 C 1.47021 * 108.70498 * 24.35841 * 15 14 12 25 25 C 1.54340 * 107.26384 * 358.57942 * 24 15 14 26 26 H 1.08998 * 110.84923 * 219.67449 * 25 24 15 27 27 O 1.42902 * 110.66092 * 96.52489 * 25 24 15 28 28 S 1.70954 * 124.80128 * 120.00039 * 4 2 1 29 29 H 1.08993 * 109.47199 * 59.99806 * 1 2 3 30 30 H 1.09003 * 109.46959 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47115 * 299.99657 * 1 2 3 32 32 H 1.09004 * 109.46865 * 240.00155 * 2 1 3 33 33 H 1.09004 * 109.46718 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47250 * 299.99599 * 3 2 1 35 35 H 1.08996 * 109.47139 * 60.00358 * 3 2 1 36 36 H 1.08005 * 122.90008 * 180.30395 * 6 5 4 37 37 H 0.97009 * 119.99695 * 359.97438 * 10 8 7 38 38 H 1.08999 * 109.46981 * 59.99760 * 11 10 8 39 39 H 1.09000 * 109.47239 * 300.00131 * 11 10 8 40 40 H 1.09003 * 110.36417 * 86.03468 * 14 12 11 41 41 H 1.09009 * 110.45681 * 323.76476 * 14 12 11 42 42 H 0.97004 * 119.99432 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.88851 * 118.12853 * 24 15 14 44 44 H 1.09007 * 109.88284 * 239.29575 * 24 15 14 45 45 H 0.96699 * 114.00219 * 66.41973 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7771 -0.3507 2.4472 6 6 2.2850 -1.0793 3.4094 7 6 3.0323 -2.1263 2.9785 8 6 3.7223 -3.1036 3.8274 9 8 4.3608 -4.0066 3.3199 10 7 3.6491 -3.0014 5.1692 11 6 4.3377 -3.9777 6.0169 12 6 4.0960 -3.6359 7.4885 13 1 3.0294 -3.6129 7.7119 14 6 4.7711 -2.2934 7.8649 15 7 5.0008 -2.3810 9.3184 16 6 5.1330 -1.3176 10.1711 17 1 4.9643 -0.3131 9.8117 18 6 5.4837 -1.5306 11.4972 19 7 5.8304 -2.7344 11.9009 20 14 5.4636 -0.1088 12.7085 21 1 4.0905 0.0629 13.2475 22 1 5.8833 1.1366 12.0171 23 1 6.4010 -0.3957 13.8240 24 6 5.0709 -3.7990 9.7001 25 6 4.8381 -4.6299 8.4204 26 1 4.2157 -5.4997 8.6305 27 8 6.0837 -5.0288 7.8447 28 16 3.0194 -2.1061 1.2166 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.1251 -0.8635 4.4555 37 1 3.1403 -2.2812 5.5737 38 1 5.4072 -3.9494 5.8087 39 1 3.9532 -4.9759 5.8075 40 1 4.1092 -1.4584 7.6350 41 1 5.7183 -2.1822 7.3371 42 1 6.0759 -2.8831 12.8275 43 1 6.0532 -4.0229 10.1162 44 1 4.2956 -4.0246 10.4324 45 1 6.5871 -5.6504 8.3881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958758204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:17 Heat of formation + Delta-G solvation = -23.797415 kcal Electronic energy + Delta-G solvation = -26632.718540 eV Core-core repulsion = 22777.529692 eV Total energy + Delta-G solvation = -3855.188848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 4.80 seconds Orbital eigenvalues (eV) -40.41959 -39.39004 -38.25093 -35.79631 -34.99342 -34.60850 -32.26159 -30.77370 -29.28927 -27.72040 -27.57599 -26.35579 -25.40539 -23.66057 -22.82262 -21.38353 -20.36382 -19.98034 -19.13792 -18.42440 -17.36455 -17.26408 -16.40581 -15.75245 -15.53444 -15.33319 -14.86355 -14.74015 -14.65874 -14.26414 -14.10370 -13.81060 -13.72214 -13.45922 -13.14498 -12.72820 -12.61610 -12.51415 -12.09427 -11.92898 -11.82448 -11.63840 -11.51818 -11.43403 -11.24990 -10.85056 -10.65793 -10.54950 -10.44875 -10.09109 -10.04334 -9.81750 -9.70949 -9.70375 -9.24780 -9.22864 -8.94951 -8.68789 -6.88862 -5.76968 -3.12135 0.00939 0.89059 1.41684 2.24491 3.09753 3.21197 3.36901 3.41986 3.43691 3.66448 4.35999 4.43561 4.52556 4.62870 4.65584 4.72249 4.96000 5.00914 5.06469 5.24859 5.27815 5.35378 5.36252 5.43123 5.50477 5.50914 5.54940 5.69051 5.81845 5.85838 5.92155 5.99230 6.04584 6.32595 6.34011 6.39553 6.54759 6.85637 7.24082 7.33753 7.41797 7.52481 7.70462 8.09744 8.17122 8.22400 9.14171 9.75643 10.41203 11.33755 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015432 B = 0.002376 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.031328 B =11782.533321 C =13257.448843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.018 4.018 3 C -0.141 4.141 4 C 0.045 3.955 5 N -0.472 5.472 6 C 0.094 3.906 7 C -0.292 4.292 8 C 0.591 3.409 9 O -0.538 6.538 10 N -0.712 5.712 11 C 0.142 3.858 12 C -0.110 4.110 13 H 0.089 0.911 14 C 0.144 3.856 15 N -0.601 5.601 16 C -0.229 4.229 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.281 1.281 23 H -0.291 1.291 24 C 0.148 3.852 25 C 0.085 3.915 26 H 0.057 0.943 27 O -0.563 6.563 28 S 0.220 5.780 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.182 0.818 37 H 0.401 0.599 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.036 0.964 41 H 0.026 0.974 42 H 0.253 0.747 43 H 0.067 0.933 44 H 0.037 0.963 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.784 1.301 -22.659 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.040 4.040 3 C -0.200 4.200 4 C -0.229 4.229 5 N -0.186 5.186 6 C -0.065 4.065 7 C -0.417 4.417 8 C 0.376 3.624 9 O -0.417 6.417 10 N -0.363 5.363 11 C 0.018 3.982 12 C -0.130 4.130 13 H 0.107 0.893 14 C 0.018 3.982 15 N -0.327 5.327 16 C -0.357 4.357 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.207 1.207 23 H -0.217 1.217 24 C 0.023 3.977 25 C 0.025 3.975 26 H 0.075 0.925 27 O -0.369 6.369 28 S 0.480 5.520 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.199 0.801 37 H 0.236 0.764 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.055 0.945 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.315 0.901 -23.996 25.756 hybrid contribution -0.185 0.865 2.575 2.723 sum -9.501 1.766 -21.421 23.500 Atomic orbital electron populations 1.21815 0.92562 1.02477 1.03071 1.19897 0.97142 0.96274 0.90732 1.21819 1.01306 0.93782 1.03071 1.27592 0.99934 0.98175 0.97230 1.66026 1.23681 1.30437 0.98466 1.22222 0.93916 0.90017 1.00304 1.25811 1.12096 1.05666 0.98140 1.16677 0.80207 0.83486 0.82038 1.90847 1.42388 1.34484 1.73944 1.45864 1.53212 1.32122 1.05058 1.21253 0.98157 0.90813 0.87934 1.22682 0.99848 0.98016 0.92437 0.89259 1.21570 0.96580 0.93137 0.86960 1.44375 1.85052 1.02096 1.01188 1.19051 1.40130 0.86450 0.90049 0.90403 1.24813 1.01132 0.97006 0.97547 1.69923 1.51108 1.19903 1.16024 0.86118 0.77386 0.81268 0.80879 1.21540 1.20684 1.21688 1.21914 1.01755 0.83267 0.90812 1.23068 0.84672 0.95448 0.94331 0.92521 1.86400 1.33685 1.67358 1.49470 1.84058 1.43738 1.23751 1.00455 0.91471 0.92457 0.91257 0.89144 0.92392 0.91475 0.91232 0.80094 0.76434 0.89820 0.91498 0.94579 0.95645 0.93707 0.91466 0.94519 0.77660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.17 37.16 0.34 -0.49 16 2 C -0.02 -0.12 3.35 -91.77 -0.31 -0.43 16 3 C -0.14 -0.87 9.17 37.16 0.34 -0.53 16 4 C 0.05 0.43 5.90 -13.29 -0.08 0.35 16 5 N -0.47 -5.20 10.49 -11.50 -0.12 -5.32 16 6 C 0.09 1.02 10.93 -18.85 -0.21 0.82 16 7 C -0.29 -3.58 6.48 -37.10 -0.24 -3.82 16 8 C 0.59 8.65 7.79 -12.85 -0.10 8.55 16 9 O -0.54 -9.68 16.97 5.20 0.09 -9.59 16 10 N -0.71 -9.52 5.39 -61.63 -0.33 -9.85 16 11 C 0.14 2.16 4.74 -4.05 -0.02 2.14 16 12 C -0.11 -1.82 3.03 -88.48 -0.27 -2.08 16 13 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 14 C 0.14 2.88 6.40 -2.54 -0.02 2.87 16 15 N -0.60 -14.97 3.39 -170.06 -0.58 -15.54 16 16 C -0.23 -6.27 10.26 -15.06 -0.15 -6.43 16 17 H 0.08 2.06 7.84 -52.48 -0.41 1.65 16 18 C -0.01 -0.24 5.45 -17.43 -0.09 -0.34 16 19 N -0.92 -26.58 10.48 55.49 0.58 -26.00 16 20 Si 0.91 21.86 29.56 -169.99 -5.02 16.84 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 C 0.15 3.42 5.19 -3.06 -0.02 3.40 16 25 C 0.08 1.51 4.09 -24.89 -0.10 1.41 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 O -0.56 -9.74 12.09 -35.23 -0.43 -10.17 16 28 S 0.22 2.27 23.00 -107.50 -2.47 -0.20 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.18 1.58 7.15 -52.48 -0.38 1.20 16 37 H 0.40 4.48 7.05 -40.82 -0.29 4.19 16 38 H 0.08 1.48 7.43 -51.93 -0.39 1.09 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.03 0.55 8.01 -51.92 -0.42 0.14 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.07 1.75 6.92 -51.93 -0.36 1.39 16 44 H 0.04 0.92 7.92 -51.93 -0.41 0.51 16 45 H 0.38 5.15 9.12 45.56 0.42 5.57 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -33.95 383.91 -9.43 -43.39 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.01 Total: 5.26 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -0.92 Total: 5.41 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.45 Total: -56.71 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.34 Total: -19.76 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.47 Total: -0.20 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.95 -9.43 -43.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958758204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.590 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.80 seconds