Wall clock time and date at job start Tue Mar 31 2020 22:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47407 * 2 1 4 4 C 1.50695 * 109.47463 * 120.00222 * 2 1 3 5 5 N 1.30936 * 122.90510 * 307.52503 * 4 2 1 6 6 C 1.29439 * 117.36117 * 180.34650 * 5 4 2 7 7 S 1.70950 * 110.39258 * 359.70437 * 6 5 4 8 8 C 1.35667 * 122.90250 * 127.32854 * 4 2 1 9 9 C 1.46680 * 126.13272 * 359.96391 * 8 4 2 10 10 O 1.21694 * 119.99899 * 352.48506 * 9 8 4 11 11 N 1.34773 * 120.00585 * 172.48839 * 9 8 4 12 12 C 1.46497 * 120.00413 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46758 * 180.02562 * 12 11 9 14 14 H 1.08993 * 109.51530 * 60.00002 * 13 12 11 15 15 C 1.53299 * 109.50782 * 180.09967 * 13 12 11 16 16 N 1.47152 * 108.38560 * 172.22128 * 15 13 12 17 17 C 1.36939 * 120.98143 * 129.48022 * 16 15 13 18 18 H 1.07999 * 119.99976 * 211.54342 * 17 16 15 19 19 C 1.38814 * 120.00053 * 31.54970 * 17 16 15 20 20 N 1.31621 * 119.99759 * 11.21648 * 19 17 16 21 21 Si 1.86796 * 120.00036 * 191.21626 * 19 17 16 22 22 H 1.48500 * 109.47020 * 89.99863 * 21 19 17 23 23 H 1.48497 * 109.46902 * 209.99760 * 21 19 17 24 24 H 1.48494 * 109.47282 * 329.99739 * 21 19 17 25 25 C 1.47152 * 118.03688 * 309.46604 * 16 15 13 26 26 C 1.53295 * 108.38539 * 50.53188 * 25 16 15 27 27 O 1.42961 * 109.26346 * 307.72369 * 26 25 16 28 28 H 1.09002 * 109.46720 * 299.99876 * 1 2 3 29 29 H 1.09003 * 109.47367 * 59.99065 * 1 2 3 30 30 H 1.08998 * 109.47307 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46959 * 240.00866 * 2 1 3 32 32 H 1.09004 * 109.47196 * 300.01108 * 3 2 1 33 33 H 1.09003 * 109.46646 * 60.00033 * 3 2 1 34 34 H 1.08992 * 109.47374 * 179.97438 * 3 2 1 35 35 H 1.07998 * 124.79815 * 179.72829 * 6 5 4 36 36 H 0.97004 * 119.99143 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.46681 * 299.99005 * 12 11 9 38 38 H 1.08993 * 109.47471 * 59.99439 * 12 11 9 39 39 H 1.09000 * 109.68324 * 291.94470 * 15 13 12 40 40 H 1.09000 * 109.68308 * 52.46059 * 15 13 12 41 41 H 0.97005 * 120.00083 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.68704 * 170.25406 * 25 16 15 43 43 H 1.09001 * 109.68207 * 290.77122 * 25 16 15 44 44 H 1.08999 * 109.51385 * 67.61905 * 26 25 16 45 45 H 1.09003 * 109.51600 * 187.78047 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.6382 -0.4024 2.4404 6 6 2.1448 -1.0783 3.4212 7 16 3.2393 -2.2524 2.8330 8 6 2.9293 -1.7271 1.1797 9 6 3.5368 -2.2849 -0.0332 10 8 3.1462 -1.9276 -1.1290 11 7 4.5275 -3.1932 0.0657 12 6 5.1347 -3.7499 -1.1458 13 6 6.2249 -4.7502 -0.7563 14 1 5.7865 -5.5555 -0.1671 15 6 6.8626 -5.3315 -2.0234 16 7 8.0254 -6.1420 -1.6280 17 6 8.1815 -7.4223 -2.0880 18 1 8.6742 -8.1608 -1.4730 19 6 7.7066 -7.7709 -3.3450 20 7 7.3086 -6.8353 -4.1808 21 14 7.6325 -9.5678 -3.8501 22 1 6.3145 -10.1354 -3.4680 23 1 7.8108 -9.6763 -5.3203 24 1 8.7132 -10.3200 -3.1635 25 6 9.0156 -5.5360 -0.7238 26 6 8.2731 -4.9447 0.4800 27 8 7.2289 -4.0861 0.0148 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.9089 -0.9228 4.4636 36 1 4.8391 -3.4777 0.9392 37 1 4.3706 -4.2570 -1.7349 38 1 5.5733 -2.9449 -1.7352 39 1 6.1386 -5.9580 -2.5445 40 1 7.1846 -4.5211 -2.6773 41 1 6.9764 -7.0789 -5.0591 42 1 9.7174 -6.2977 -0.3842 43 1 9.5555 -4.7465 -1.2467 44 1 7.8428 -5.7508 1.0742 45 1 8.9698 -4.3719 1.0921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035536463.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:55 Heat of formation + Delta-G solvation = -18.080995 kcal Electronic energy + Delta-G solvation = -27298.779598 eV Core-core repulsion = 23443.838633 eV Total energy + Delta-G solvation = -3854.940965 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.68532 -39.29876 -38.37751 -35.19344 -34.70739 -34.33162 -31.58531 -31.23347 -30.18246 -27.48683 -27.21148 -26.32851 -25.23420 -23.35267 -22.63316 -21.89296 -21.27309 -19.99243 -19.32365 -18.05094 -17.23740 -16.79312 -16.10060 -16.01138 -15.41692 -15.17685 -15.03887 -14.53655 -14.41828 -14.31862 -14.27950 -13.97550 -13.73486 -13.28565 -13.02129 -12.99101 -12.85187 -12.56208 -12.30622 -12.20941 -11.60049 -11.26695 -11.23127 -11.10272 -11.02795 -10.90377 -10.78220 -10.45114 -10.29762 -10.17777 -10.13890 -9.78816 -9.72048 -9.65027 -9.16914 -9.10520 -8.95194 -8.61224 -6.73713 -5.89230 -3.39669 0.02980 0.94928 1.32545 2.26610 3.05642 3.14265 3.31143 3.37840 3.39304 3.88501 4.18828 4.38910 4.61680 4.72636 4.82884 5.09949 5.12682 5.16343 5.30904 5.32722 5.49653 5.54962 5.58392 5.71885 5.77116 5.80697 5.85909 5.88504 5.94520 6.01171 6.05910 6.14628 6.15762 6.27519 6.36638 6.46675 6.57127 6.75108 7.00772 7.32231 7.42418 7.47988 7.67282 7.77431 8.12468 8.31902 9.06872 9.67634 10.27390 11.18712 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017807 B = 0.002594 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.023019 B =10793.195190 C =11494.669068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C -0.136 4.136 4 C 0.151 3.849 5 N -0.468 5.468 6 C 0.031 3.969 7 S 0.161 5.839 8 C -0.287 4.287 9 C 0.593 3.407 10 O -0.523 6.523 11 N -0.711 5.711 12 C 0.132 3.868 13 C 0.053 3.947 14 H 0.056 0.944 15 C 0.156 3.844 16 N -0.593 5.593 17 C -0.260 4.260 18 H 0.067 0.933 19 C 0.008 3.992 20 N -0.901 5.901 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.109 3.891 26 C 0.050 3.950 27 O -0.391 6.391 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.128 0.872 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.205 0.795 36 H 0.400 0.600 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.033 0.967 41 H 0.257 0.743 42 H 0.062 0.938 43 H 0.027 0.973 44 H 0.043 0.957 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.889 11.630 15.275 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.071 4.071 3 C -0.194 4.194 4 C 0.013 3.987 5 N -0.182 5.182 6 C -0.265 4.265 7 S 0.416 5.584 8 C -0.411 4.411 9 C 0.378 3.622 10 O -0.402 6.402 11 N -0.361 5.361 12 C 0.009 3.991 13 C -0.006 4.006 14 H 0.074 0.926 15 C 0.029 3.971 16 N -0.317 5.317 17 C -0.390 4.390 18 H 0.084 0.916 19 C -0.192 4.192 20 N -0.545 5.545 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.203 1.203 25 C -0.017 4.017 26 C -0.028 4.028 27 O -0.310 6.310 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.221 0.779 36 H 0.235 0.765 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.061 0.939 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.931 11.646 15.006 21.435 hybrid contribution -0.075 -0.967 -0.376 1.040 sum -10.005 10.680 14.630 20.693 Atomic orbital electron populations 1.21724 0.93779 1.01798 1.02054 1.20422 0.96420 0.96213 0.94087 1.21736 1.00985 0.94654 1.02043 1.20699 0.92119 0.92541 0.93308 1.66047 1.25884 1.27585 0.98646 1.28712 0.97999 0.96222 1.03558 1.84042 1.41140 1.35144 0.98067 1.25582 1.10482 1.07571 0.97505 1.16673 0.79598 0.79148 0.86773 1.90719 1.62430 1.60245 1.26782 1.45899 1.36407 1.42838 1.10942 1.21524 0.94333 0.97134 0.86090 1.23182 0.87979 0.93019 0.96436 0.92592 1.21260 0.90587 0.94756 0.90489 1.43975 1.20049 1.12790 1.54908 1.19153 1.37126 0.85479 0.97209 0.91566 1.25226 1.00991 0.97789 0.95199 1.69969 1.46230 1.31103 1.07153 0.86226 0.78038 0.84449 0.77638 1.21266 1.21529 1.20345 1.21616 0.92319 0.96561 0.91247 1.23019 0.89702 0.93524 0.96558 1.87775 1.35935 1.36166 1.71131 0.92152 0.92065 0.92972 0.85485 0.91845 0.92430 0.92858 0.77871 0.76535 0.89542 0.90242 0.88945 0.94872 0.93315 0.91943 0.95510 0.93876 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.07 37.16 0.34 -1.09 16 2 C -0.05 -0.62 3.15 -91.77 -0.29 -0.91 16 3 C -0.14 -1.46 9.18 37.16 0.34 -1.12 16 4 C 0.15 1.89 5.41 -83.90 -0.45 1.44 16 5 N -0.47 -5.24 10.24 -11.53 -0.12 -5.36 16 6 C 0.03 0.25 12.22 51.75 0.63 0.89 16 7 S 0.16 1.44 22.38 -107.50 -2.41 -0.97 16 8 C -0.29 -3.65 6.47 -37.10 -0.24 -3.89 16 9 C 0.59 8.91 7.76 -12.85 -0.10 8.81 16 10 O -0.52 -9.14 14.04 5.19 0.07 -9.07 16 11 N -0.71 -10.26 5.44 -61.62 -0.34 -10.60 16 12 C 0.13 2.18 5.37 -4.04 -0.02 2.16 16 13 C 0.05 0.98 2.86 -26.57 -0.08 0.90 16 14 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 15 C 0.16 3.58 4.67 -3.53 -0.02 3.56 16 16 N -0.59 -14.50 3.03 -171.83 -0.52 -15.02 16 17 C -0.26 -6.93 9.62 -15.06 -0.14 -7.07 16 18 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 19 C 0.01 0.20 5.04 -17.43 -0.09 0.12 16 20 N -0.90 -25.46 11.19 55.49 0.62 -24.84 16 21 Si 0.91 21.11 29.57 -169.99 -5.03 16.08 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 25 C 0.11 2.22 6.74 -3.53 -0.02 2.19 16 26 C 0.05 0.85 6.98 37.31 0.26 1.11 16 27 O -0.39 -7.05 10.14 -35.23 -0.36 -7.41 16 28 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.13 1.81 4.97 -51.93 -0.26 1.55 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.20 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.40 5.15 7.56 -40.82 -0.31 4.84 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.09 2.33 6.38 -51.93 -0.33 2.00 16 40 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 378.75 15.07 5.71 5.71 Total: -1.00 -31.17 378.75 -9.02 -40.18 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.77 Total: 4.19 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 0.12 Total: 7.11 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.35 Total: -55.82 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.28 Total: -16.48 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.41 Total: -0.97 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.17 -9.02 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035536463.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.101 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds