Wall clock time and date at job start Tue Mar 31 2020 22:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47312 * 2 1 4 4 C 1.50704 * 109.47510 * 120.00362 * 2 1 3 5 5 N 1.28648 * 124.71927 * 120.24275 * 4 2 1 6 6 C 1.33560 * 115.76249 * 180.19193 * 5 4 2 7 7 C 1.47263 * 123.14115 * 179.82712 * 6 5 4 8 8 O 1.21629 * 120.00373 * 179.72717 * 7 6 5 9 9 N 1.34782 * 119.99692 * 359.72972 * 7 6 5 10 10 C 1.46501 * 119.99584 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47021 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.50917 * 60.00283 * 11 10 9 13 13 C 1.53294 * 109.51313 * 180.10096 * 11 10 9 14 14 N 1.47152 * 108.38414 * 172.22679 * 13 11 10 15 15 C 1.36939 * 120.98235 * 129.48835 * 14 13 11 16 16 H 1.08007 * 119.99996 * 206.22172 * 15 14 13 17 17 C 1.38810 * 120.00032 * 26.22952 * 15 14 13 18 18 N 1.31622 * 120.00183 * 16.90375 * 17 15 14 19 19 Si 1.86803 * 120.00064 * 196.91142 * 17 15 14 20 20 H 1.48501 * 109.47400 * 89.99327 * 19 17 15 21 21 H 1.48498 * 109.47088 * 209.99736 * 19 17 15 22 22 H 1.48501 * 109.46979 * 329.99409 * 19 17 15 23 23 C 1.47158 * 118.03698 * 309.46752 * 14 13 11 24 24 C 1.53293 * 108.38230 * 50.53271 * 23 14 13 25 25 O 1.42954 * 109.26878 * 307.72450 * 24 23 14 26 26 C 1.35213 * 113.71713 * 359.55843 * 6 5 4 27 27 S 1.70767 * 124.71851 * 299.97742 * 4 2 1 28 28 H 1.08993 * 109.47000 * 59.99362 * 1 2 3 29 29 H 1.08998 * 109.46620 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46715 * 299.99500 * 1 2 3 31 31 H 1.09007 * 109.46986 * 240.00145 * 2 1 3 32 32 H 1.08998 * 109.47546 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47180 * 300.00573 * 3 2 1 34 34 H 1.09007 * 109.46976 * 60.00139 * 3 2 1 35 35 H 0.96988 * 120.00354 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47570 * 299.99934 * 10 9 7 37 37 H 1.09002 * 109.47068 * 59.99872 * 10 9 7 38 38 H 1.08994 * 109.68601 * 291.95265 * 13 11 10 39 39 H 1.09003 * 109.68011 * 52.46952 * 13 11 10 40 40 H 0.96996 * 119.99885 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.68372 * 170.26013 * 23 14 13 42 42 H 1.09002 * 109.67750 * 290.77375 * 23 14 13 43 43 H 1.09004 * 109.51037 * 67.62813 * 24 23 14 44 44 H 1.09000 * 109.51031 * 187.77217 * 24 23 14 45 45 H 1.08000 * 125.58425 * 180.27335 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 1.2304 5 7 2.7789 -1.7582 1.2181 6 6 3.1167 -2.2444 2.4153 7 6 3.9612 -3.4381 2.5904 8 8 4.2379 -3.8287 3.7085 9 7 4.4275 -4.0978 1.5115 10 6 5.2681 -5.2850 1.6857 11 6 5.6586 -5.8390 0.3140 12 1 6.2116 -5.0810 -0.2407 13 6 6.5362 -7.0828 0.4952 14 7 6.7416 -7.7020 -0.8238 15 6 7.9976 -8.0268 -1.2622 16 1 8.2050 -8.0725 -2.3212 17 6 9.0041 -8.2977 -0.3455 18 7 8.6991 -8.5708 0.9054 19 14 10.7918 -8.2743 -0.8871 20 1 11.3436 -6.9065 -0.7143 21 1 11.5717 -9.2308 -0.0613 22 1 10.8811 -8.6671 -2.3165 23 6 5.5574 -7.9621 -1.6578 24 6 4.7276 -6.6755 -1.7340 25 8 4.4790 -6.1954 -0.4106 26 6 2.6157 -1.5349 3.4515 27 16 1.6955 -0.2330 2.8350 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5138 -0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8901 35 1 4.2066 -3.7866 0.6198 36 1 6.1678 -5.0152 2.2386 37 1 4.7150 -6.0436 2.2395 38 1 7.4980 -6.7949 0.9194 39 1 6.0387 -7.7894 1.1596 40 1 9.4025 -8.7597 1.5460 41 1 5.8711 -8.2565 -2.6592 42 1 4.9615 -8.7580 -1.2110 43 1 5.2768 -5.9209 -2.2971 44 1 3.7795 -6.8826 -2.2302 45 1 2.7719 -1.7545 4.4974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035550182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:32 Heat of formation + Delta-G solvation = -23.528725 kcal Electronic energy + Delta-G solvation = -26975.015030 eV Core-core repulsion = 23119.837833 eV Total energy + Delta-G solvation = -3855.177197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.60145 -38.98991 -38.25151 -35.87072 -34.80926 -34.28828 -31.36914 -30.95160 -30.24498 -27.65402 -27.55842 -26.40450 -25.05097 -23.37172 -23.02648 -21.53556 -20.93134 -20.07971 -19.51084 -18.44595 -17.10596 -16.58312 -16.07152 -16.01091 -15.53403 -15.34693 -15.03285 -14.67974 -14.35944 -14.35297 -14.12974 -13.82862 -13.50559 -13.29968 -13.22362 -12.91899 -12.78587 -12.65081 -12.27271 -12.17217 -12.10897 -11.67225 -11.51476 -11.39298 -11.09972 -10.84785 -10.73103 -10.41733 -10.25330 -10.14868 -10.07327 -9.93399 -9.89639 -9.63829 -9.17553 -9.06167 -8.77969 -8.55110 -6.76183 -5.84694 -3.28592 0.30497 0.96558 1.37325 1.85330 3.29802 3.35245 3.38790 3.41568 3.43033 3.67165 4.28090 4.38535 4.43835 4.57663 4.62037 4.93920 5.03416 5.10826 5.12636 5.20368 5.32876 5.35540 5.36824 5.51179 5.56047 5.64606 5.70986 5.75020 5.75564 5.87958 5.95404 6.03493 6.13113 6.26093 6.37386 6.51348 6.66176 6.78922 7.07309 7.19319 7.47920 7.70574 7.72994 7.86232 8.30547 8.33088 9.10432 9.73393 10.30543 11.23387 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.002403 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.729464 B =11649.699031 C =12218.377676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 C -0.148 4.148 4 C 0.034 3.966 5 N -0.440 5.440 6 C 0.016 3.984 7 C 0.588 3.412 8 O -0.540 6.540 9 N -0.698 5.698 10 C 0.131 3.869 11 C 0.056 3.944 12 H 0.056 0.944 13 C 0.153 3.847 14 N -0.594 5.594 15 C -0.256 4.256 16 H 0.069 0.931 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.905 3.095 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.051 3.949 25 O -0.389 6.389 26 C -0.229 4.229 27 S 0.202 5.798 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.411 0.589 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.032 0.968 40 H 0.256 0.744 41 H 0.062 0.938 42 H 0.027 0.973 43 H 0.043 0.957 44 H 0.082 0.918 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.142 20.833 -0.016 26.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.043 4.043 3 C -0.207 4.207 4 C -0.247 4.247 5 N -0.155 5.155 6 C -0.118 4.118 7 C 0.370 3.630 8 O -0.418 6.418 9 N -0.348 5.348 10 C 0.007 3.993 11 C -0.004 4.004 12 H 0.074 0.926 13 C 0.026 3.974 14 N -0.318 5.318 15 C -0.385 4.385 16 H 0.087 0.913 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.735 3.265 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.204 1.204 23 C -0.017 4.017 24 C -0.028 4.028 25 O -0.309 6.309 26 C -0.371 4.371 27 S 0.459 5.541 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.247 0.753 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.061 0.939 44 H 0.100 0.900 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -17.349 21.011 0.907 27.263 hybrid contribution 1.727 -0.890 -0.579 2.028 sum -15.621 20.121 0.327 25.475 Atomic orbital electron populations 1.21941 0.93039 1.02925 1.02747 1.19853 0.96160 0.95426 0.92831 1.21945 1.01987 0.93972 1.02755 1.27197 1.00625 0.97085 0.99748 1.66946 1.12276 1.10175 1.26122 1.20500 1.04008 1.00082 0.87247 1.17065 0.79373 0.81595 0.84930 1.90818 1.59244 1.67506 1.24191 1.45804 1.50861 1.28822 1.09348 1.21502 0.94866 0.86006 0.96885 1.23143 0.87507 0.99028 0.90729 0.92581 1.21306 0.98599 0.89733 0.87729 1.44050 1.01737 1.69699 1.16338 1.19201 0.85445 1.41907 0.91987 0.91313 1.25065 0.98903 0.99377 0.96300 1.70019 1.31737 1.49650 1.03175 0.86242 0.84794 0.77520 0.77928 1.21338 1.21637 1.20399 1.21606 0.89660 0.94378 0.96080 1.23000 0.99401 0.96739 0.83616 1.87785 1.30915 1.84943 1.27209 1.26614 1.04032 1.00375 1.06038 1.82690 1.45452 1.25728 1.00191 0.90985 0.91806 0.92227 0.87757 0.91842 0.90986 0.92222 0.75278 0.89743 0.90481 0.88563 0.95017 0.93387 0.91971 0.95543 0.93860 0.90023 0.79335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.09 37.16 0.34 -0.45 16 2 C -0.02 -0.14 3.34 -91.77 -0.31 -0.45 16 3 C -0.15 -0.78 9.09 37.16 0.34 -0.44 16 4 C 0.03 0.32 6.00 -13.61 -0.08 0.24 16 5 N -0.44 -5.65 10.12 -8.51 -0.09 -5.74 16 6 C 0.02 0.23 6.70 -84.52 -0.57 -0.34 16 7 C 0.59 9.89 7.80 -12.59 -0.10 9.79 16 8 O -0.54 -10.47 16.71 5.25 0.09 -10.38 16 9 N -0.70 -11.55 5.45 -61.43 -0.33 -11.88 16 10 C 0.13 2.37 5.37 -4.04 -0.02 2.35 16 11 C 0.06 1.10 2.86 -26.58 -0.08 1.02 16 12 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 13 C 0.15 3.67 4.73 -3.53 -0.02 3.65 16 14 N -0.59 -15.02 3.05 -171.83 -0.52 -15.54 16 15 C -0.26 -7.00 9.65 -15.06 -0.15 -7.14 16 16 H 0.07 1.83 7.88 -52.48 -0.41 1.42 16 17 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 18 N -0.90 -26.08 11.14 55.49 0.62 -25.46 16 19 Si 0.91 21.57 29.59 -169.99 -5.03 16.54 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 C 0.11 2.31 6.74 -3.53 -0.02 2.28 16 24 C 0.05 0.91 6.98 37.31 0.26 1.17 16 25 O -0.39 -7.57 10.14 -35.23 -0.36 -7.93 16 26 C -0.23 -2.59 10.62 29.66 0.31 -2.27 16 27 S 0.20 1.62 22.22 -107.50 -2.39 -0.77 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.27 7.92 -51.93 -0.41 -0.14 16 31 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.27 7.91 -51.92 -0.41 -0.14 16 35 H 0.41 6.46 7.87 -40.82 -0.32 6.14 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 38 H 0.10 2.53 6.14 -51.93 -0.32 2.21 16 39 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.06 1.24 7.96 -51.93 -0.41 0.82 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.19 1.95 8.03 -52.49 -0.42 1.53 16 LS Contribution 383.37 15.07 5.78 5.78 Total: -1.00 -32.53 383.37 -9.33 -41.86 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.92 Total: 4.12 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -0.17 Total: 9.40 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.33 Total: -58.63 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.27 Total: -18.31 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.39 Total: -0.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.53 -9.33 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035550182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.332 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds