Wall clock time and date at job start Tue Mar 31 2020 22:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47312 * 2 1 4 4 C 1.50704 * 109.47510 * 120.00362 * 2 1 3 5 5 N 1.28648 * 124.71927 * 120.24275 * 4 2 1 6 6 C 1.33560 * 115.76249 * 180.19193 * 5 4 2 7 7 C 1.47263 * 123.14115 * 179.82712 * 6 5 4 8 8 O 1.21629 * 120.00373 * 179.72717 * 7 6 5 9 9 N 1.34782 * 119.99692 * 359.72972 * 7 6 5 10 10 C 1.46501 * 119.99584 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47021 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.50917 * 60.00283 * 11 10 9 13 13 C 1.53294 * 109.51313 * 180.10096 * 11 10 9 14 14 N 1.47152 * 108.38414 * 172.22679 * 13 11 10 15 15 C 1.36939 * 120.98235 * 129.48835 * 14 13 11 16 16 H 1.08007 * 119.99996 * 206.22172 * 15 14 13 17 17 C 1.38810 * 120.00032 * 26.22952 * 15 14 13 18 18 N 1.31622 * 120.00183 * 16.90375 * 17 15 14 19 19 Si 1.86803 * 120.00064 * 196.91142 * 17 15 14 20 20 H 1.48501 * 109.47400 * 89.99327 * 19 17 15 21 21 H 1.48498 * 109.47088 * 209.99736 * 19 17 15 22 22 H 1.48501 * 109.46979 * 329.99409 * 19 17 15 23 23 C 1.47158 * 118.03698 * 309.46752 * 14 13 11 24 24 C 1.53293 * 108.38230 * 50.53271 * 23 14 13 25 25 O 1.42954 * 109.26878 * 307.72450 * 24 23 14 26 26 C 1.35213 * 113.71713 * 359.55843 * 6 5 4 27 27 S 1.70767 * 124.71851 * 299.97742 * 4 2 1 28 28 H 1.08993 * 109.47000 * 59.99362 * 1 2 3 29 29 H 1.08998 * 109.46620 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46715 * 299.99500 * 1 2 3 31 31 H 1.09007 * 109.46986 * 240.00145 * 2 1 3 32 32 H 1.08998 * 109.47546 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47180 * 300.00573 * 3 2 1 34 34 H 1.09007 * 109.46976 * 60.00139 * 3 2 1 35 35 H 0.96988 * 120.00354 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47570 * 299.99934 * 10 9 7 37 37 H 1.09002 * 109.47068 * 59.99872 * 10 9 7 38 38 H 1.08994 * 109.68601 * 291.95265 * 13 11 10 39 39 H 1.09003 * 109.68011 * 52.46952 * 13 11 10 40 40 H 0.96996 * 119.99885 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.68372 * 170.26013 * 23 14 13 42 42 H 1.09002 * 109.67750 * 290.77375 * 23 14 13 43 43 H 1.09004 * 109.51037 * 67.62813 * 24 23 14 44 44 H 1.09000 * 109.51031 * 187.77217 * 24 23 14 45 45 H 1.08000 * 125.58425 * 180.27335 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 1.2304 5 7 2.7789 -1.7582 1.2181 6 6 3.1167 -2.2444 2.4153 7 6 3.9612 -3.4381 2.5904 8 8 4.2379 -3.8287 3.7085 9 7 4.4275 -4.0978 1.5115 10 6 5.2681 -5.2850 1.6857 11 6 5.6586 -5.8390 0.3140 12 1 6.2116 -5.0810 -0.2407 13 6 6.5362 -7.0828 0.4952 14 7 6.7416 -7.7020 -0.8238 15 6 7.9976 -8.0268 -1.2622 16 1 8.2050 -8.0725 -2.3212 17 6 9.0041 -8.2977 -0.3455 18 7 8.6991 -8.5708 0.9054 19 14 10.7918 -8.2743 -0.8871 20 1 11.3436 -6.9065 -0.7143 21 1 11.5717 -9.2308 -0.0613 22 1 10.8811 -8.6671 -2.3165 23 6 5.5574 -7.9621 -1.6578 24 6 4.7276 -6.6755 -1.7340 25 8 4.4790 -6.1954 -0.4106 26 6 2.6157 -1.5349 3.4515 27 16 1.6955 -0.2330 2.8350 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5138 -0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8901 35 1 4.2066 -3.7866 0.6198 36 1 6.1678 -5.0152 2.2386 37 1 4.7150 -6.0436 2.2395 38 1 7.4980 -6.7949 0.9194 39 1 6.0387 -7.7894 1.1596 40 1 9.4025 -8.7597 1.5460 41 1 5.8711 -8.2565 -2.6592 42 1 4.9615 -8.7580 -1.2110 43 1 5.2768 -5.9209 -2.2971 44 1 3.7795 -6.8826 -2.2302 45 1 2.7719 -1.7545 4.4974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035550182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:27 Heat of formation + Delta-G solvation = -46.278947 kcal Electronic energy + Delta-G solvation = -26976.001553 eV Core-core repulsion = 23119.837833 eV Total energy + Delta-G solvation = -3856.163720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 4.50 seconds Orbital eigenvalues (eV) -41.64241 -40.37909 -39.66585 -36.54179 -36.41733 -35.92400 -33.28466 -32.59509 -31.13176 -29.22142 -28.03632 -27.90761 -26.25869 -25.10793 -24.18926 -23.05788 -21.78360 -21.48178 -20.83776 -19.43234 -18.95803 -17.78360 -17.54634 -17.23279 -16.84760 -16.54161 -16.44959 -16.11235 -15.63180 -15.50680 -15.34346 -15.13377 -15.05465 -14.61056 -14.56040 -14.22914 -13.93835 -13.64208 -13.22700 -13.08508 -13.01479 -13.00403 -12.70434 -12.62341 -12.55492 -12.20568 -12.13346 -12.10859 -11.91955 -11.87781 -11.45122 -11.28990 -10.85815 -10.82320 -10.68437 -10.58117 -10.32109 -9.84318 -8.78594 -7.93213 -5.41110 -0.54571 0.22070 0.56557 0.85266 1.45279 1.46813 1.55869 2.05558 2.22067 2.46306 2.73755 2.86154 3.21532 3.46342 3.63539 3.94654 4.01011 4.02490 4.10109 4.17327 4.18113 4.22713 4.40563 4.46712 4.49086 4.54411 4.63978 4.75125 4.79316 4.82573 4.92844 4.93071 4.96913 5.03783 5.16957 5.19582 5.23611 5.33909 5.37238 5.48878 5.57855 6.22636 6.23106 6.29783 6.55857 7.01296 7.03120 7.71591 8.25747 9.12910 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.002403 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.729464 B =11649.699031 C =12218.377676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.022 4.022 3 C -0.146 4.146 4 C 0.021 3.979 5 N -0.469 5.469 6 C -0.013 4.013 7 C 0.585 3.415 8 O -0.575 6.575 9 N -0.693 5.693 10 C 0.141 3.859 11 C 0.077 3.923 12 H 0.061 0.939 13 C 0.161 3.839 14 N -0.614 5.614 15 C -0.267 4.267 16 H 0.075 0.925 17 C -0.051 4.051 18 N -0.936 5.936 19 Si 0.972 3.028 20 H -0.284 1.284 21 H -0.296 1.296 22 H -0.266 1.266 23 C 0.103 3.897 24 C 0.056 3.944 25 O -0.391 6.391 26 C -0.240 4.240 27 S 0.298 5.702 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.417 0.583 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.002 0.998 40 H 0.252 0.748 41 H 0.074 0.926 42 H 0.016 0.984 43 H 0.053 0.947 44 H 0.121 0.879 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.806 23.550 -1.433 30.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.044 4.044 3 C -0.204 4.204 4 C -0.258 4.258 5 N -0.184 5.184 6 C -0.148 4.148 7 C 0.370 3.630 8 O -0.455 6.455 9 N -0.343 5.343 10 C 0.017 3.983 11 C 0.017 3.983 12 H 0.079 0.921 13 C 0.034 3.966 14 N -0.339 5.339 15 C -0.396 4.396 16 H 0.093 0.907 17 C -0.247 4.247 18 N -0.582 5.582 19 Si 0.800 3.200 20 H -0.210 1.210 21 H -0.222 1.222 22 H -0.190 1.190 23 C -0.022 4.022 24 C -0.021 4.021 25 O -0.311 6.311 26 C -0.383 4.383 27 S 0.557 5.443 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.254 0.746 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.020 0.980 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.139 0.861 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -19.056 23.758 -0.558 30.462 hybrid contribution 2.118 -1.684 -0.157 2.710 sum -16.939 22.074 -0.716 27.833 Atomic orbital electron populations 1.21955 0.91574 1.02652 1.04243 1.20017 0.97231 0.95934 0.91254 1.21958 1.01294 0.92938 1.04243 1.27798 0.99583 0.96387 1.02049 1.66915 1.13878 1.11769 1.25862 1.20129 1.05729 1.00187 0.88753 1.17509 0.79077 0.82183 0.84196 1.90783 1.60687 1.68758 1.25301 1.45666 1.50648 1.28202 1.09822 1.21219 0.94876 0.86493 0.95706 1.22752 0.87064 0.96873 0.91593 0.92074 1.21065 0.97670 0.90775 0.87043 1.44352 1.02551 1.70138 1.16838 1.19568 0.86584 1.41102 0.92357 0.90732 1.25871 1.02858 0.99578 0.96383 1.70183 1.32599 1.51120 1.04264 0.85199 0.79729 0.77208 0.77909 1.21037 1.22218 1.19019 1.21820 0.88612 0.95992 0.95818 1.23097 1.00913 0.95023 0.83086 1.87799 1.30386 1.84811 1.28076 1.26915 1.03901 1.01413 1.06097 1.82321 1.42359 1.22272 0.97385 0.89162 0.92950 0.91122 0.88624 0.92970 0.89176 0.91118 0.74636 0.90137 0.91812 0.91331 0.97980 0.93894 0.90736 0.96550 0.92891 0.86122 0.78922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.09 71.98 0.65 -0.47 16 2 C -0.02 -0.26 3.34 -11.54 -0.04 -0.30 16 3 C -0.15 -1.13 9.09 71.98 0.65 -0.47 16 4 C 0.02 0.37 6.00 88.58 0.53 0.91 16 5 N -0.47 -11.72 10.12 -180.83 -1.83 -13.55 16 6 C -0.01 -0.37 6.70 40.56 0.27 -0.09 16 7 C 0.59 20.25 7.80 86.62 0.68 20.93 16 8 O -0.57 -23.16 16.71 -4.12 -0.07 -23.23 16 9 N -0.69 -23.44 5.45 -466.51 -2.54 -25.98 16 10 C 0.14 5.33 5.37 86.38 0.46 5.79 16 11 C 0.08 3.08 2.86 30.69 0.09 3.17 16 12 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 13 C 0.16 8.05 4.73 86.35 0.41 8.46 16 14 N -0.61 -31.49 3.05 -697.54 -2.13 -33.62 16 15 C -0.27 -14.67 9.65 84.03 0.81 -13.86 16 16 H 0.08 3.93 7.88 -2.91 -0.02 3.91 16 17 C -0.05 -2.88 4.95 84.86 0.42 -2.46 16 18 N -0.94 -56.03 11.14 21.65 0.24 -55.79 16 19 Si 0.97 44.88 29.59 68.60 2.03 46.91 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 C 0.10 4.29 6.74 86.35 0.58 4.87 16 24 C 0.06 1.91 6.98 72.08 0.50 2.42 16 25 O -0.39 -14.93 10.14 -148.98 -1.51 -16.44 16 26 C -0.24 -5.20 10.62 67.12 0.71 -4.49 16 27 S 0.30 3.96 22.22 -56.49 -1.26 2.70 16 28 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.38 7.92 -2.39 -0.02 0.36 16 31 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.09 0.39 8.14 -2.38 -0.02 0.38 16 34 H 0.07 0.38 7.91 -2.38 -0.02 0.36 16 35 H 0.42 13.14 7.87 -92.72 -0.73 12.41 16 36 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.07 3.79 6.14 -2.39 -0.01 3.78 16 39 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.07 2.88 7.96 -2.39 -0.02 2.86 16 42 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.19 3.87 8.03 -2.91 -0.02 3.85 16 Total: -1.00 -72.58 383.37 -0.06 -72.63 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.27 Total: 21.97 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: 6.74 Total: 24.39 kcal Atomic # 7 Polarization: -122.68 SS G_CDS: -6.26 Total: -128.94 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -1.58 Total: -39.67 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.26 Total: 2.70 kcal Total: -72.58 -0.06 -72.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035550182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.352 kcal (2) G-P(sol) polarization free energy of solvation -72.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.50 seconds