Wall clock time and date at job start Tue Mar 31 2020 22:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47385 * 2 1 4 4 C 1.50702 * 109.47307 * 120.00299 * 2 1 3 5 5 S 1.70943 * 125.58338 * 292.03977 * 4 2 1 6 6 C 1.70764 * 91.13007 * 179.97438 * 5 4 2 7 7 N 1.28651 * 110.55974 * 359.76337 * 6 5 4 8 8 C 1.33557 * 115.76308 * 0.42672 * 7 6 5 9 9 C 1.47269 * 123.14110 * 179.82925 * 8 7 6 10 10 O 1.21632 * 120.00051 * 174.37241 * 9 8 7 11 11 N 1.34778 * 119.99758 * 354.36880 * 9 8 7 12 12 C 1.46505 * 119.99808 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46979 * 180.02562 * 12 11 9 14 14 H 1.08993 * 109.50987 * 60.00459 * 13 12 11 15 15 C 1.53302 * 109.50878 * 180.10317 * 13 12 11 16 16 N 1.47158 * 108.38099 * 172.27832 * 15 13 12 17 17 C 1.36937 * 120.97997 * 129.48484 * 16 15 13 18 18 H 1.08003 * 119.99738 * 212.37360 * 17 16 15 19 19 C 1.38816 * 119.99980 * 32.37129 * 17 16 15 20 20 N 1.31618 * 120.00069 * 15.29352 * 19 17 16 21 21 Si 1.86799 * 119.99719 * 195.29090 * 19 17 16 22 22 H 1.48492 * 109.47145 * 90.00397 * 21 19 17 23 23 H 1.48504 * 109.46712 * 210.00045 * 21 19 17 24 24 H 1.48492 * 109.47127 * 330.00068 * 21 19 17 25 25 C 1.47146 * 118.03572 * 309.46605 * 16 15 13 26 26 C 1.53299 * 108.38623 * 50.53429 * 25 16 15 27 27 O 1.42960 * 109.55332 * 299.87466 * 13 12 11 28 28 H 1.08999 * 109.46252 * 300.00174 * 1 2 3 29 29 H 1.08992 * 109.46750 * 59.99564 * 1 2 3 30 30 H 1.08995 * 109.46638 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46943 * 239.99714 * 2 1 3 32 32 H 1.08995 * 109.47045 * 59.99868 * 3 2 1 33 33 H 1.09001 * 109.47224 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47062 * 299.99882 * 3 2 1 35 35 H 1.07996 * 124.72146 * 180.02562 * 6 5 4 36 36 H 0.96993 * 120.00110 * 0.02562 * 11 9 8 37 37 H 1.09004 * 109.46774 * 60.00574 * 12 11 9 38 38 H 1.08997 * 109.47062 * 300.00334 * 12 11 9 39 39 H 1.08996 * 109.67839 * 291.99642 * 15 13 12 40 40 H 1.09001 * 109.68290 * 52.51912 * 15 13 12 41 41 H 0.96995 * 119.99797 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.68394 * 170.25724 * 25 16 15 43 43 H 1.09004 * 109.68057 * 290.77226 * 25 16 15 44 44 H 1.08999 * 109.51302 * 67.62248 * 26 25 16 45 45 H 1.09011 * 109.51126 * 187.77417 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 16 1.8722 -0.1504 2.8375 6 6 2.6827 -1.5297 3.4348 7 7 3.0170 -2.3109 2.4689 8 6 2.6832 -1.8955 1.2442 9 6 2.9898 -2.6599 0.0234 10 8 2.5704 -2.2800 -1.0534 11 7 3.7350 -3.7803 0.0992 12 6 4.0395 -4.5410 -1.1153 13 6 4.8929 -5.7585 -0.7540 14 1 4.3457 -6.3924 -0.0563 15 6 5.2142 -6.5538 -2.0245 16 7 6.1832 -7.6065 -1.6805 17 6 5.9670 -8.9092 -2.0426 18 1 6.3229 -9.7110 -1.4126 19 6 5.2903 -9.1993 -3.2195 20 7 5.1214 -8.2634 -4.1293 21 14 4.6196 -10.9181 -3.5118 22 1 3.2337 -11.0047 -2.9856 23 1 4.6148 -11.2064 -4.9686 24 1 5.4770 -11.9093 -2.8138 25 6 7.3915 -7.2177 -0.9361 26 6 6.9641 -6.3900 0.2814 27 8 6.1133 -5.3247 -0.1489 28 1 -0.3632 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3632 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 2.8828 -1.7217 4.4786 36 1 4.0691 -4.0834 0.9578 37 1 4.5869 -3.9074 -1.8132 38 1 3.1104 -4.8735 -1.5783 39 1 4.3027 -7.0070 -2.4142 40 1 5.6437 -5.8896 -2.7746 41 1 4.6489 -8.4662 -4.9517 42 1 7.9220 -8.1105 -0.6051 43 1 8.0412 -6.6211 -1.5766 44 1 6.4245 -7.0262 0.9829 45 1 7.8472 -5.9765 0.7687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035578907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:24 Heat of formation + Delta-G solvation = -21.666845 kcal Electronic energy + Delta-G solvation = -27322.951046 eV Core-core repulsion = 23467.854587 eV Total energy + Delta-G solvation = -3855.096460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.70371 -38.88083 -38.17313 -36.06836 -34.70975 -34.24330 -31.36428 -31.04543 -29.94023 -27.50762 -27.41386 -26.32851 -25.00649 -23.31464 -22.65922 -21.74144 -21.39062 -20.08018 -19.38507 -18.17437 -17.12881 -16.67660 -16.02559 -15.95370 -15.53712 -15.20133 -15.03186 -14.49650 -14.34318 -14.17669 -14.05315 -13.97011 -13.75345 -13.29080 -13.21705 -12.93845 -12.78689 -12.49890 -12.28425 -12.20338 -11.73937 -11.52767 -11.48315 -11.27286 -11.10647 -10.84006 -10.75394 -10.39959 -10.27573 -10.09887 -10.05273 -9.70362 -9.66255 -9.59352 -9.22888 -9.04059 -8.78870 -8.56008 -6.68526 -5.85927 -3.35378 0.32589 0.98585 1.40042 1.87554 3.31976 3.35160 3.37636 3.40948 3.42135 3.95760 4.27597 4.42161 4.43363 4.63723 4.83672 4.90089 5.15048 5.19558 5.29403 5.34202 5.35117 5.54958 5.55202 5.62823 5.63234 5.70009 5.83580 5.87678 5.95265 5.99588 6.01483 6.12112 6.14375 6.28286 6.38534 6.52911 6.68219 6.80763 7.02388 7.16553 7.42530 7.71322 7.72891 7.84630 8.30282 8.36187 9.10127 9.71749 10.32837 11.21992 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.002498 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.036140 B =11204.737077 C =11912.281312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C -0.146 4.146 4 C -0.168 4.168 5 S 0.192 5.808 6 C -0.007 4.007 7 N -0.435 5.435 8 C -0.002 4.002 9 C 0.591 3.409 10 O -0.536 6.536 11 N -0.698 5.698 12 C 0.131 3.869 13 C 0.055 3.945 14 H 0.056 0.944 15 C 0.157 3.843 16 N -0.592 5.592 17 C -0.262 4.262 18 H 0.066 0.934 19 C 0.009 3.991 20 N -0.898 5.898 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.109 3.891 26 C 0.050 3.950 27 O -0.389 6.389 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.135 0.865 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.204 0.796 36 H 0.411 0.589 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.034 0.966 41 H 0.256 0.744 42 H 0.062 0.938 43 H 0.027 0.973 44 H 0.043 0.957 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.342 18.582 15.130 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.070 4.070 3 C -0.203 4.203 4 C -0.292 4.292 5 S 0.448 5.552 6 C -0.307 4.307 7 N -0.149 5.149 8 C -0.136 4.136 9 C 0.374 3.626 10 O -0.414 6.414 11 N -0.348 5.348 12 C 0.007 3.993 13 C -0.004 4.004 14 H 0.074 0.926 15 C 0.030 3.970 16 N -0.316 5.316 17 C -0.391 4.391 18 H 0.083 0.917 19 C -0.191 4.191 20 N -0.540 5.540 21 Si 0.734 3.266 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.017 4.017 26 C -0.028 4.028 27 O -0.308 6.308 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.152 0.848 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.220 0.780 36 H 0.247 0.753 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.052 0.948 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.061 0.939 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.760 19.286 14.815 25.528 hybrid contribution 0.095 -1.947 -0.382 1.987 sum -7.665 17.339 14.434 23.827 Atomic orbital electron populations 1.21834 0.93524 1.02391 1.01934 1.20273 0.96189 0.95599 0.94959 1.21936 1.01557 0.94683 1.02152 1.25675 1.03133 0.99069 1.01308 1.82763 1.51992 1.23907 0.96523 1.28315 1.03478 0.95247 1.03655 1.66959 1.18881 1.30904 0.98165 1.20404 1.05047 0.95732 0.92436 1.17029 0.78715 0.80529 0.86313 1.90677 1.53947 1.68453 1.28339 1.45818 1.51687 1.25028 1.12265 1.21506 0.98982 0.92258 0.86505 1.23135 0.85033 0.94028 0.98235 0.92559 1.21209 0.95437 0.89694 0.90654 1.43965 1.17347 1.04916 1.65394 1.19127 1.35385 0.82593 1.02044 0.91653 1.25218 1.01570 0.97567 0.94747 1.70016 1.43678 1.32962 1.07385 0.86265 0.79184 0.84027 0.77115 1.21254 1.21589 1.20316 1.21623 0.90432 0.97113 0.92543 1.23015 0.93319 0.89652 0.96788 1.87785 1.31210 1.32524 1.79301 0.92973 0.91500 0.92212 0.84792 0.92827 0.92277 0.91413 0.77983 0.75286 0.90443 0.89774 0.89630 0.94818 0.93378 0.91967 0.95555 0.93866 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.18 37.16 0.34 -0.91 16 2 C -0.05 -0.53 3.05 -91.77 -0.28 -0.81 16 3 C -0.15 -1.22 9.01 37.16 0.33 -0.89 16 4 C -0.17 -1.90 5.06 -35.39 -0.18 -2.08 16 5 S 0.19 1.49 22.35 -107.50 -2.40 -0.92 16 6 C -0.01 -0.06 12.17 51.43 0.63 0.56 16 7 N -0.44 -5.43 10.14 -12.37 -0.13 -5.55 16 8 C 0.00 -0.03 6.70 -84.53 -0.57 -0.59 16 9 C 0.59 9.56 7.79 -12.59 -0.10 9.46 16 10 O -0.54 -9.60 13.89 5.25 0.07 -9.53 16 11 N -0.70 -11.24 5.45 -61.43 -0.33 -11.58 16 12 C 0.13 2.31 5.37 -4.04 -0.02 2.28 16 13 C 0.06 1.07 2.86 -26.57 -0.08 1.00 16 14 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 15 C 0.16 3.72 4.68 -3.53 -0.02 3.70 16 16 N -0.59 -14.93 3.02 -171.82 -0.52 -15.44 16 17 C -0.26 -7.15 9.59 -15.06 -0.14 -7.29 16 18 H 0.07 1.75 7.88 -52.48 -0.41 1.33 16 19 C 0.01 0.25 4.94 -17.43 -0.09 0.16 16 20 N -0.90 -25.91 11.51 55.49 0.64 -25.27 16 21 Si 0.90 21.48 29.58 -169.99 -5.03 16.45 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.11 2.31 6.73 -3.53 -0.02 2.29 16 26 C 0.05 0.91 6.98 37.31 0.26 1.17 16 27 O -0.39 -7.50 10.14 -35.23 -0.36 -7.86 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.13 1.81 5.07 -51.93 -0.26 1.55 16 32 H 0.05 0.37 7.78 -51.93 -0.40 -0.03 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.41 6.36 7.88 -40.82 -0.32 6.04 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.09 2.21 6.58 -51.93 -0.34 1.87 16 40 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -31.91 378.72 -9.06 -40.98 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.79 Total: 4.96 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 0.07 Total: 8.05 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.34 Total: -57.84 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.28 Total: -17.38 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.40 Total: -0.92 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.91 -9.06 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035578907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.309 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds