Wall clock time and date at job start Tue Mar 31 2020 23:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47289 * 2 1 4 4 C 1.50706 * 109.47205 * 120.00111 * 2 1 3 5 5 N 1.29435 * 124.80048 * 299.69617 * 4 2 1 6 6 C 1.30942 * 117.36010 * 179.76323 * 5 4 2 7 7 C 1.35658 * 114.19072 * 0.52356 * 6 5 4 8 8 C 1.46690 * 126.13143 * 179.69349 * 7 6 5 9 9 O 1.21681 * 120.00047 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99691 * 0.03804 * 8 7 6 11 11 C 1.46500 * 119.99774 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46618 * 179.97438 * 11 10 8 13 13 H 1.08993 * 109.51047 * 60.00743 * 12 11 10 14 14 C 1.53304 * 109.50762 * 180.10258 * 12 11 10 15 15 N 1.47146 * 108.38443 * 172.22928 * 14 12 11 16 16 C 1.36933 * 120.98562 * 129.48408 * 15 14 12 17 17 H 1.07998 * 120.00047 * 333.61462 * 16 15 14 18 18 C 1.38812 * 119.99981 * 153.60757 * 16 15 14 19 19 N 1.31618 * 120.00467 * 343.17477 * 18 16 15 20 20 Si 1.86799 * 119.99612 * 163.16924 * 18 16 15 21 21 H 1.48503 * 109.46984 * 94.43604 * 20 18 16 22 22 H 1.48508 * 109.47044 * 214.42930 * 20 18 16 23 23 H 1.48500 * 109.47371 * 334.43420 * 20 18 16 24 24 C 1.47156 * 118.03555 * 309.46638 * 15 14 12 25 25 C 1.53301 * 108.38538 * 50.53508 * 24 15 14 26 26 O 1.42956 * 109.51641 * 299.89776 * 12 11 10 27 27 S 1.70950 * 124.80795 * 119.99877 * 4 2 1 28 28 H 1.09001 * 109.47767 * 299.99966 * 1 2 3 29 29 H 1.09000 * 109.47331 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47513 * 59.99826 * 1 2 3 31 31 H 1.08998 * 109.47075 * 239.99835 * 2 1 3 32 32 H 1.09007 * 109.47215 * 60.00094 * 3 2 1 33 33 H 1.08994 * 109.47378 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47414 * 300.00312 * 3 2 1 35 35 H 1.08001 * 122.90042 * 180.24878 * 6 5 4 36 36 H 0.97001 * 119.99866 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.47335 * 300.00292 * 11 10 8 38 38 H 1.08996 * 109.46747 * 60.00292 * 11 10 8 39 39 H 1.09003 * 109.67991 * 291.95490 * 14 12 11 40 40 H 1.08998 * 109.68234 * 52.46611 * 14 12 11 41 41 H 0.96997 * 120.00294 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.68602 * 170.25871 * 24 15 14 43 43 H 1.09001 * 109.68231 * 290.77399 * 24 15 14 44 44 H 1.08998 * 109.51415 * 67.62300 * 25 24 15 45 45 H 1.09000 * 109.51234 * 187.78198 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7821 -0.3469 2.4473 6 6 2.2902 -1.0753 3.4095 7 6 3.0329 -2.1256 2.9788 8 6 3.7242 -3.1020 3.8276 9 8 4.3631 -4.0048 3.3202 10 7 3.6515 -2.9993 5.1695 11 6 4.3414 -3.9748 6.0172 12 6 4.1000 -3.6325 7.4888 13 1 3.0308 -3.6614 7.6986 14 6 4.8237 -4.6513 8.3768 15 7 4.7337 -4.1963 9.7733 16 6 4.3040 -5.0394 10.7631 17 1 3.6447 -5.8608 10.5243 18 6 4.7159 -4.8383 12.0733 19 7 5.7546 -4.0706 12.3263 20 14 3.7956 -5.6571 13.4776 21 1 4.4621 -6.9375 13.8262 22 1 3.7981 -4.7597 14.6609 23 1 2.3952 -5.9249 13.0623 24 6 5.1196 -2.8087 10.0748 25 6 4.3815 -1.8797 9.1041 26 8 4.6055 -2.3239 7.7639 27 16 3.0192 -2.1062 1.2168 28 1 -0.3635 0.5138 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 1.8932 -0.5138 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 2.1352 -0.8561 4.4556 36 1 3.1423 -2.2795 5.5739 37 1 3.9577 -4.9734 5.8083 38 1 5.4108 -3.9455 5.8084 39 1 4.3490 -5.6275 8.2774 40 1 5.8700 -4.7199 8.0791 41 1 6.0422 -3.9298 13.2419 42 1 4.8410 -2.5646 11.1000 43 1 6.1960 -2.6914 9.9492 44 1 3.3134 -1.9015 9.3204 45 1 4.7561 -0.8624 9.2178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035630464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:38 Heat of formation + Delta-G solvation = -21.163482 kcal Electronic energy + Delta-G solvation = -26518.402490 eV Core-core repulsion = 22663.327858 eV Total energy + Delta-G solvation = -3855.074632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 17.43 seconds Orbital eigenvalues (eV) -40.45222 -39.42793 -38.43476 -35.82928 -34.99329 -34.33413 -31.81851 -31.03359 -29.96722 -27.60666 -27.53653 -26.40812 -25.30182 -23.26143 -22.93447 -22.05362 -21.26875 -19.96725 -19.19281 -18.48156 -17.32828 -16.89705 -16.20109 -15.94123 -15.42190 -15.35714 -15.05539 -14.71092 -14.62397 -14.43434 -14.35363 -13.96745 -13.80334 -13.30360 -13.26583 -13.10928 -12.77340 -12.57034 -12.39745 -12.12603 -11.90405 -11.66707 -11.58911 -11.46576 -11.16478 -10.89538 -10.76372 -10.50647 -10.43908 -10.31933 -10.02295 -9.80406 -9.74193 -9.69733 -9.29108 -9.13163 -9.03093 -8.58550 -6.80079 -5.88533 -3.32330 -0.02552 0.85565 1.38307 2.20676 3.05135 3.15354 3.31359 3.38820 3.40777 3.63006 4.16558 4.32893 4.39327 4.50156 4.59903 4.68078 4.93403 4.98023 5.07435 5.21938 5.29044 5.32467 5.40001 5.40775 5.45919 5.48315 5.65683 5.74132 5.77931 5.78777 5.88974 5.97074 6.09458 6.22078 6.31791 6.39304 6.43592 6.70197 7.05266 7.30023 7.37889 7.47293 7.66679 7.79098 8.05317 8.28976 9.06983 9.69678 10.26310 11.19665 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.002001 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.435180 B =13987.195095 C =14306.656512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.018 4.018 3 C -0.141 4.141 4 C 0.045 3.955 5 N -0.473 5.473 6 C 0.095 3.905 7 C -0.292 4.292 8 C 0.591 3.409 9 O -0.540 6.540 10 N -0.705 5.705 11 C 0.132 3.868 12 C 0.064 3.936 13 H 0.060 0.940 14 C 0.122 3.878 15 N -0.593 5.593 16 C -0.256 4.256 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.390 6.390 27 S 0.222 5.778 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.182 0.818 36 H 0.404 0.596 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.030 0.970 41 H 0.255 0.745 42 H 0.094 0.906 43 H 0.029 0.971 44 H 0.041 0.959 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.208 9.689 -23.833 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.041 4.041 3 C -0.200 4.200 4 C -0.229 4.229 5 N -0.187 5.187 6 C -0.064 4.064 7 C -0.417 4.417 8 C 0.376 3.624 9 O -0.419 6.419 10 N -0.356 5.356 11 C 0.008 3.992 12 C 0.004 3.996 13 H 0.078 0.922 14 C -0.006 4.006 15 N -0.317 5.317 16 C -0.385 4.385 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.546 5.546 20 Si 0.735 3.265 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.309 6.309 27 S 0.482 5.518 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.199 0.801 36 H 0.239 0.761 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.047 0.953 44 H 0.060 0.940 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.433 8.981 -24.870 27.754 hybrid contribution -0.794 -0.008 2.382 2.511 sum -9.227 8.973 -22.488 25.911 Atomic orbital electron populations 1.21813 0.92544 1.02509 1.03068 1.19898 0.97160 0.96265 0.90732 1.21816 1.01283 0.93789 1.03068 1.27602 0.99931 0.98169 0.97235 1.66034 1.23634 1.30529 0.98464 1.22211 0.93940 0.89974 1.00274 1.25788 1.12157 1.05623 0.98144 1.16694 0.80217 0.83490 0.82011 1.90847 1.42547 1.34498 1.73962 1.45678 1.53005 1.32056 1.04830 1.21515 0.98254 0.91754 0.87642 1.22823 0.98062 0.86111 0.92588 0.92220 1.21437 0.97620 0.95202 0.86293 1.44061 1.77582 1.08343 1.01732 1.19188 1.22212 1.10125 0.87008 0.91330 1.25058 0.96384 0.99793 0.98422 1.70031 1.23866 1.41582 1.19156 0.86241 0.79624 0.78744 0.81926 1.21330 1.21462 1.20371 1.21447 0.96075 0.82859 0.98280 1.23334 0.99500 0.98256 0.82704 1.87777 1.81367 1.31379 1.30422 1.84067 1.43612 1.23784 1.00386 0.91276 0.92431 0.91452 0.89124 0.91257 0.92408 0.91457 0.80138 0.76056 0.89791 0.90337 0.91701 0.95168 0.93470 0.88755 0.95325 0.94044 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.17 37.15 0.34 -0.45 16 2 C -0.02 -0.11 3.35 -91.77 -0.31 -0.42 16 3 C -0.14 -0.81 9.17 37.16 0.34 -0.47 16 4 C 0.05 0.41 5.91 -13.29 -0.08 0.33 16 5 N -0.47 -5.00 10.49 -11.50 -0.12 -5.12 16 6 C 0.09 0.99 10.93 -18.85 -0.21 0.79 16 7 C -0.29 -3.47 6.48 -37.09 -0.24 -3.71 16 8 C 0.59 8.41 7.79 -12.85 -0.10 8.31 16 9 O -0.54 -9.40 16.96 5.21 0.09 -9.31 16 10 N -0.70 -9.27 5.43 -61.61 -0.33 -9.60 16 11 C 0.13 1.94 5.37 -4.04 -0.02 1.91 16 12 C 0.06 1.08 2.86 -26.57 -0.08 1.00 16 13 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 14 C 0.12 2.48 6.02 -3.53 -0.02 2.46 16 15 N -0.59 -14.56 3.05 -171.82 -0.52 -15.09 16 16 C -0.26 -6.86 9.65 -15.06 -0.15 -7.00 16 17 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 18 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 19 N -0.90 -25.68 11.15 55.49 0.62 -25.07 16 20 Si 0.91 21.20 29.59 -169.99 -5.03 16.17 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 C 0.14 3.24 5.44 -3.53 -0.02 3.23 16 25 C 0.04 0.74 6.98 37.31 0.26 1.00 16 26 O -0.39 -7.03 10.14 -35.23 -0.36 -7.38 16 27 S 0.22 2.20 23.00 -107.50 -2.47 -0.27 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.18 1.52 7.15 -52.49 -0.38 1.14 16 36 H 0.40 4.58 7.06 -40.82 -0.29 4.29 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 383.67 15.07 5.78 5.78 Total: -1.00 -32.16 383.67 -9.57 -41.73 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.86 Total: 1.21 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -0.36 Total: 6.94 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.36 Total: -54.87 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.27 Total: -16.69 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.47 Total: -0.27 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.16 -9.57 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035630464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.571 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.43 seconds