Wall clock time and date at job start Wed Apr 1 2020 00:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46904 * 2 1 4 4 H 1.09007 * 109.49944 * 55.06473 * 3 2 1 5 5 C 1.53195 * 109.49880 * 295.00094 * 3 2 1 6 6 N 1.46927 * 108.77500 * 185.41177 * 5 3 2 7 7 C 1.34779 * 120.63068 * 233.57916 * 6 5 3 8 8 O 1.21629 * 119.99951 * 6.38896 * 7 6 5 9 9 C 1.47107 * 120.00174 * 186.37901 * 7 6 5 10 10 C 1.38040 * 127.76372 * 206.37689 * 9 7 6 11 11 C 1.37573 * 114.25099 * 180.15224 * 10 9 7 12 12 O 1.35958 * 120.82538 * 179.81134 * 11 10 9 13 13 C 1.42895 * 117.00110 * 179.74578 * 12 11 10 14 14 N 1.30357 * 118.34719 * 359.53896 * 11 10 9 15 15 S 1.69676 * 107.63597 * 0.24956 * 14 11 10 16 16 C 1.46925 * 118.74008 * 53.86294 * 6 5 3 17 17 C 1.53629 * 108.54126 * 306.09381 * 16 6 5 18 18 C 1.53035 * 109.50077 * 175.16106 * 3 2 1 19 19 H 1.09003 * 109.46259 * 301.34071 * 18 3 2 20 20 N 1.46506 * 109.46033 * 61.29314 * 18 3 2 21 21 C 1.36938 * 120.00094 * 204.99823 * 20 18 3 22 22 H 1.08000 * 119.99784 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99840 * 180.02562 * 21 20 18 24 24 N 1.31617 * 120.00238 * 180.02562 * 23 21 20 25 25 Si 1.86808 * 119.99852 * 0.02562 * 23 21 20 26 26 H 1.48491 * 109.46870 * 90.00267 * 25 23 21 27 27 H 1.48505 * 109.46880 * 210.00064 * 25 23 21 28 28 H 1.48497 * 109.46954 * 329.99862 * 25 23 21 29 29 H 1.08997 * 109.47156 * 60.00049 * 1 2 3 30 30 H 1.09007 * 109.46512 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47295 * 299.99402 * 1 2 3 32 32 H 1.09000 * 109.47161 * 240.00083 * 2 1 3 33 33 H 1.08997 * 109.47156 * 119.99951 * 2 1 3 34 34 H 1.08997 * 109.58457 * 65.62440 * 5 3 2 35 35 H 1.09004 * 109.58287 * 305.20058 * 5 3 2 36 36 H 1.07997 * 122.87333 * 359.94147 * 10 9 7 37 37 H 1.08998 * 109.47259 * 60.00095 * 13 12 11 38 38 H 1.08999 * 109.47304 * 299.99960 * 13 12 11 39 39 H 1.09001 * 109.47412 * 179.97438 * 13 12 11 40 40 H 1.08996 * 109.58845 * 65.92135 * 16 6 5 41 41 H 1.08999 * 109.58853 * 186.34670 * 16 6 5 42 42 H 1.09006 * 109.62807 * 294.86548 * 17 16 6 43 43 H 1.08998 * 109.45890 * 174.74677 * 17 16 6 44 44 H 0.97001 * 119.99204 * 25.00726 * 20 18 3 45 45 H 0.96996 * 120.00234 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6064 1.9817 0.8424 5 6 1.6350 2.1280 -1.3088 6 7 2.2413 3.4657 -1.3493 7 6 1.4814 4.5580 -1.5638 8 8 0.2702 4.4566 -1.6102 9 6 2.1168 5.8728 -1.7416 10 6 1.5767 7.1153 -1.4771 11 6 2.4199 8.1676 -1.7499 12 8 2.0223 9.4510 -1.5420 13 6 2.9654 10.4800 -1.8476 14 7 3.6116 7.9033 -2.2075 15 16 3.7504 6.2172 -2.3365 16 6 3.6928 3.5895 -1.1578 17 6 4.0740 2.8881 0.1548 18 6 3.5655 1.4451 0.1217 19 1 3.8574 0.9360 1.0403 20 7 4.1480 0.7486 -1.0281 21 6 5.3862 0.1729 -0.9245 22 1 5.9331 0.2320 0.0049 23 6 5.9383 -0.4865 -2.0141 24 7 7.1281 -1.0403 -1.9145 25 14 4.9925 -0.5880 -3.6218 26 1 5.3340 0.5809 -4.4715 27 1 5.3571 -1.8400 -4.3324 28 1 3.5346 -0.5858 -3.3394 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5496 2.2173 -1.3538 35 1 1.9907 1.5397 -2.1547 36 1 0.5767 7.2500 -1.0924 37 1 3.2351 10.4242 -2.9022 38 1 3.8584 10.3476 -1.2368 39 1 2.5221 11.4534 -1.6374 40 1 4.2129 3.1180 -1.9916 41 1 3.9656 4.6434 -1.1033 42 1 3.6217 3.4140 0.9957 43 1 5.1583 2.8894 0.2656 44 1 3.6566 0.6954 -1.8627 45 1 7.5137 -1.5014 -2.6757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037842336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:53 Heat of formation + Delta-G solvation = -24.523781 kcal Electronic energy + Delta-G solvation = -28075.969683 eV Core-core repulsion = 24220.749338 eV Total energy + Delta-G solvation = -3855.220346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.68018 -41.12794 -39.41033 -37.50873 -36.11661 -35.41930 -33.58199 -32.60465 -31.52556 -30.23422 -29.03455 -27.26495 -25.59171 -25.11475 -24.84710 -22.66591 -22.14226 -20.73105 -20.10212 -19.87644 -19.37651 -18.74003 -17.61849 -17.28812 -17.25005 -16.78378 -16.36260 -16.05501 -15.78389 -15.63594 -15.19702 -15.05805 -14.83070 -14.56714 -14.40094 -14.36569 -14.20047 -13.81686 -13.38636 -13.09223 -12.99275 -12.92641 -12.68915 -12.56195 -12.52107 -12.36997 -12.10201 -12.02903 -11.85191 -11.75831 -11.62627 -11.50257 -11.30447 -11.16939 -10.92867 -10.85385 -9.82058 -9.44501 -9.21118 -7.95018 -5.26302 -1.03613 -0.06321 0.38831 1.05759 1.39498 1.40885 1.48347 1.49822 1.78106 2.17407 2.52344 3.14386 3.37248 3.61012 3.61445 3.74703 3.88094 3.95947 4.06344 4.16082 4.20197 4.29838 4.34558 4.36085 4.45160 4.49298 4.50586 4.64825 4.71146 4.74579 4.81020 4.97275 4.97443 4.99768 5.13808 5.17032 5.19540 5.26255 5.38627 5.46378 5.60311 5.87739 5.92021 6.10190 6.28819 6.74898 7.15664 7.91773 8.09906 9.26759 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.003689 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.920194 B = 7588.258749 C = 8835.870605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.096 4.096 4 H 0.094 0.906 5 C 0.119 3.881 6 N -0.591 5.591 7 C 0.596 3.404 8 O -0.547 6.547 9 C -0.194 4.194 10 C -0.122 4.122 11 C 0.303 3.697 12 O -0.302 6.302 13 C 0.031 3.969 14 N -0.537 5.537 15 S 0.321 5.679 16 C 0.103 3.897 17 C -0.140 4.140 18 C 0.178 3.822 19 H 0.055 0.945 20 N -0.742 5.742 21 C -0.210 4.210 22 H 0.063 0.937 23 C -0.059 4.059 24 N -0.985 5.985 25 Si 0.934 3.066 26 H -0.280 1.280 27 H -0.304 1.304 28 H -0.252 1.252 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.189 0.811 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.132 0.868 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.362 0.638 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.140 18.342 2.490 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.115 4.115 4 H 0.112 0.888 5 C -0.003 4.003 6 N -0.322 5.322 7 C 0.383 3.617 8 O -0.427 6.427 9 C -0.326 4.326 10 C -0.160 4.160 11 C 0.090 3.910 12 O -0.208 6.208 13 C -0.063 4.063 14 N -0.378 5.378 15 S 0.472 5.528 16 C -0.021 4.021 17 C -0.181 4.181 18 C 0.069 3.931 19 H 0.073 0.927 20 N -0.386 5.386 21 C -0.341 4.341 22 H 0.081 0.919 23 C -0.250 4.250 24 N -0.636 5.636 25 Si 0.763 3.237 26 H -0.207 1.207 27 H -0.231 1.231 28 H -0.177 1.177 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.206 0.794 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.150 0.850 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.197 0.803 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.798 18.319 1.881 21.870 hybrid contribution -1.044 -0.117 -0.705 1.265 sum -12.842 18.202 1.176 22.307 Atomic orbital electron populations 1.21808 0.94544 1.02050 1.02162 1.21397 0.96281 0.94853 1.02227 1.21732 0.95280 0.96910 0.97623 0.88821 1.21806 0.99697 0.80523 0.98249 1.48016 1.08810 1.06450 1.68965 1.16795 0.85794 0.82177 0.76976 1.90807 1.13716 1.85553 1.52585 1.25841 1.01166 0.97271 1.08294 1.20867 1.03528 0.87335 1.04223 1.19963 0.88657 0.87853 0.94558 1.86303 1.42359 1.10678 1.81471 1.23231 0.92774 0.88823 1.01523 1.76367 1.20384 1.12115 1.28921 1.85464 1.09425 0.96846 1.61072 1.22233 0.78508 1.01264 1.00121 1.22450 1.01985 0.97553 0.96077 1.20422 0.91132 0.91012 0.90488 0.92696 1.42804 1.18088 1.65848 1.11819 1.18984 0.92721 1.24840 0.97565 0.91917 1.25287 0.97419 1.01288 1.01018 1.69853 1.18550 1.43571 1.31636 0.85725 0.79771 0.76823 0.81401 1.20664 1.23103 1.17677 0.92697 0.92227 0.91840 0.93218 0.91671 0.88049 0.91966 0.79375 0.92343 0.92212 0.84966 0.90807 0.89198 0.90115 0.91052 0.80328 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.67 71.98 0.70 -2.43 16 2 C -0.11 -2.87 5.19 30.59 0.16 -2.71 16 3 C -0.10 -2.52 2.14 -10.72 -0.02 -2.55 16 4 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 5 C 0.12 3.24 5.03 86.36 0.43 3.67 16 6 N -0.59 -16.02 2.97 -822.30 -2.44 -18.46 16 7 C 0.60 16.48 7.65 86.57 0.66 17.14 16 8 O -0.55 -17.50 16.46 -4.12 -0.07 -17.57 16 9 C -0.19 -4.70 6.08 24.55 0.15 -4.55 16 10 C -0.12 -2.65 10.18 22.07 0.22 -2.43 16 11 C 0.30 6.71 7.36 84.75 0.62 7.34 16 12 O -0.30 -5.83 10.51 -93.08 -0.98 -6.81 16 13 C 0.03 0.41 10.43 113.37 1.18 1.59 16 14 N -0.54 -12.77 11.03 -175.22 -1.93 -14.70 16 15 S 0.32 7.44 20.21 -56.49 -1.14 6.30 16 16 C 0.10 2.80 5.44 86.51 0.47 3.27 16 17 C -0.14 -3.96 5.79 30.82 0.18 -3.78 16 18 C 0.18 5.70 2.53 45.01 0.11 5.81 16 19 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 20 N -0.74 -30.04 3.52 -322.81 -1.14 -31.17 16 21 C -0.21 -10.81 10.41 84.03 0.87 -9.94 16 22 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 23 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 24 N -0.98 -60.73 13.97 21.65 0.30 -60.43 16 25 Si 0.93 43.32 27.74 68.60 1.90 45.22 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 27 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 28 H -0.25 -10.47 6.52 99.48 0.65 -9.82 16 29 H 0.05 1.14 6.70 -2.39 -0.02 1.13 16 30 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.52 7.69 -2.39 -0.02 1.51 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.10 2.67 5.71 -2.39 -0.01 2.66 16 35 H 0.06 1.84 6.64 -2.38 -0.02 1.82 16 36 H 0.19 3.52 8.06 -2.91 -0.02 3.50 16 37 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 38 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 39 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 2.29 7.74 -2.39 -0.02 2.27 16 41 H 0.09 2.17 3.78 -19.46 -0.07 2.09 16 42 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.36 14.51 3.80 -92.71 -0.35 14.16 16 45 H 0.25 15.16 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -65.36 368.35 1.27 -64.10 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.54 Total: 25.88 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.21 Total: 7.64 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -5.20 Total: -124.76 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -1.05 Total: -24.37 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.90 Total: 45.22 kcal Atomic # 16 Polarization: 7.44 SS G_CDS: -1.14 Total: 6.30 kcal Total: -65.36 1.27 -64.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037842336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.574 kcal (2) G-P(sol) polarization free energy of solvation -65.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds