Wall clock time and date at job start Wed Apr 1 2020 00:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47309 * 2 1 4 4 H 1.09001 * 109.49602 * 304.94070 * 3 2 1 5 5 C 1.53191 * 109.49428 * 65.00031 * 3 2 1 6 6 N 1.46928 * 108.77409 * 174.58834 * 5 3 2 7 7 C 1.34779 * 120.63153 * 126.41593 * 6 5 3 8 8 O 1.21636 * 119.99995 * 353.51666 * 7 6 5 9 9 C 1.47117 * 120.00155 * 173.52204 * 7 6 5 10 10 C 1.38037 * 127.75640 * 154.31225 * 9 7 6 11 11 C 1.37578 * 114.24470 * 179.80571 * 10 9 7 12 12 O 1.35964 * 120.82508 * 180.23857 * 11 10 9 13 13 C 1.42890 * 116.99816 * 180.26383 * 12 11 10 14 14 N 1.30360 * 118.34550 * 0.51945 * 11 10 9 15 15 S 1.69679 * 107.63621 * 359.71673 * 14 11 10 16 16 C 1.46922 * 118.73852 * 306.38737 * 6 5 3 17 17 C 1.53198 * 108.77472 * 53.61377 * 16 6 5 18 18 C 1.53041 * 109.33410 * 305.34707 * 17 16 6 19 19 H 1.09002 * 109.45981 * 181.40295 * 18 17 16 20 20 N 1.46505 * 109.45890 * 301.35984 * 18 17 16 21 21 C 1.36936 * 119.99730 * 275.00162 * 20 18 17 22 22 H 1.08002 * 120.00409 * 0.02562 * 21 20 18 23 23 C 1.38812 * 119.99466 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00403 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99752 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47278 * 59.99877 * 25 23 21 27 27 H 1.48498 * 109.47274 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46973 * 299.99536 * 25 23 21 29 29 H 1.08993 * 109.46970 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46912 * 300.00163 * 1 2 3 31 31 H 1.09000 * 109.46915 * 59.99913 * 1 2 3 32 32 H 1.09000 * 109.47405 * 240.00643 * 2 1 3 33 33 H 1.09003 * 109.47406 * 120.00036 * 2 1 3 34 34 H 1.08997 * 109.59238 * 54.79985 * 5 3 2 35 35 H 1.09001 * 109.70525 * 294.44384 * 5 3 2 36 36 H 1.08000 * 122.88188 * 359.95396 * 10 9 7 37 37 H 1.09001 * 109.47162 * 59.99931 * 13 12 11 38 38 H 1.09002 * 109.47097 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.47643 * 299.99656 * 13 12 11 40 40 H 1.08993 * 109.58996 * 293.82508 * 16 6 5 41 41 H 1.08999 * 109.58762 * 173.39551 * 16 6 5 42 42 H 1.08996 * 109.49747 * 65.31270 * 17 16 6 43 43 H 1.08996 * 109.49618 * 185.37797 * 17 16 6 44 44 H 0.96998 * 119.99593 * 95.01111 * 20 18 17 45 45 H 0.96998 * 120.00089 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 -0.8423 5 6 1.6351 2.1280 1.3088 6 7 2.2415 3.4656 1.3494 7 6 1.4816 4.5579 1.5639 8 8 0.2703 4.4569 1.6085 9 6 2.1172 5.8724 1.7439 10 6 1.5733 7.1159 1.4921 11 6 2.4175 8.1675 1.7644 12 8 2.0161 9.4518 1.5692 13 6 2.9607 10.4799 1.8731 14 7 3.6138 7.9017 2.2090 15 16 3.7559 6.2149 2.3256 16 6 3.6922 3.5898 1.1524 17 6 4.0741 2.8880 -0.1548 18 6 3.5662 1.4447 -0.1221 19 1 3.8585 0.9360 -1.0408 20 7 4.1486 0.7483 1.0277 21 6 5.3864 0.1718 0.9238 22 1 5.9335 0.2310 -0.0055 23 6 5.9380 -0.4885 2.0131 24 7 5.2716 -0.5602 3.1458 25 14 7.6269 -1.2742 1.8718 26 1 8.6311 -0.2326 1.5375 27 1 7.9863 -1.9110 3.1642 28 1 7.6059 -2.3033 0.8014 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9907 1.5397 2.1547 35 1 0.5498 2.2172 1.3564 36 1 0.5701 7.2517 1.1160 37 1 3.8480 10.3530 1.2530 38 1 2.5143 11.4540 1.6730 39 1 3.2403 10.4172 2.9248 40 1 4.2156 3.1208 1.9854 41 1 3.9641 4.6438 1.0941 42 1 3.6220 3.4139 -0.9956 43 1 5.1585 2.8898 -0.2652 44 1 3.6574 0.6954 1.8624 45 1 5.6573 -1.0213 3.9071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037842341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:03 Heat of formation + Delta-G solvation = -8.558007 kcal Electronic energy + Delta-G solvation = -27954.527245 eV Core-core repulsion = 24099.999227 eV Total energy + Delta-G solvation = -3854.528018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.46661 -40.03366 -37.99674 -36.52057 -34.63976 -33.81255 -31.79861 -31.49904 -29.54924 -28.79997 -28.12695 -25.95848 -24.22277 -23.84107 -23.50046 -21.55821 -20.87368 -19.49831 -18.89758 -18.14886 -17.74372 -17.37362 -16.50795 -16.25033 -16.06110 -15.30603 -14.88780 -14.78589 -14.46509 -14.12558 -13.95350 -13.69777 -13.51945 -13.33892 -13.19479 -13.06004 -12.61286 -12.38498 -12.27173 -11.91724 -11.55642 -11.50289 -11.33972 -11.19408 -11.09776 -10.88816 -10.84412 -10.63858 -10.37687 -10.33025 -10.23803 -9.99201 -9.86256 -9.79993 -9.60430 -8.98398 -8.42285 -8.39779 -7.03121 -5.83094 -3.12023 0.04538 1.00449 1.42465 2.10249 2.65294 2.98672 3.20827 3.39692 3.45140 3.45960 4.30603 4.53948 4.67873 4.89635 4.98850 5.00160 5.10259 5.17405 5.25151 5.28102 5.38649 5.43159 5.49366 5.54243 5.64365 5.71857 5.73900 5.85238 5.93497 5.99012 6.06656 6.09113 6.26129 6.29615 6.36365 6.48521 6.52496 6.63023 6.68873 6.81951 6.85374 6.92191 7.41726 7.64743 8.03923 8.35151 9.47070 10.02277 10.37469 11.39061 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.003519 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.838483 B = 7954.784677 C = 9604.748999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.589 5.589 7 C 0.589 3.411 8 O -0.527 6.527 9 C -0.179 4.179 10 C -0.136 4.136 11 C 0.303 3.697 12 O -0.298 6.298 13 C 0.037 3.963 14 N -0.533 5.533 15 S 0.323 5.677 16 C 0.101 3.899 17 C -0.147 4.147 18 C 0.178 3.822 19 H 0.054 0.946 20 N -0.718 5.718 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.009 4.009 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.175 0.825 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.079 0.921 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.690 14.929 -4.566 16.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.002 4.002 6 N -0.320 5.320 7 C 0.374 3.626 8 O -0.405 6.405 9 C -0.311 4.311 10 C -0.173 4.173 11 C 0.090 3.910 12 O -0.204 6.204 13 C -0.058 4.058 14 N -0.373 5.373 15 S 0.475 5.525 16 C -0.023 4.023 17 C -0.188 4.188 18 C 0.068 3.932 19 H 0.072 0.928 20 N -0.361 5.361 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.206 4.206 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.192 0.808 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.078 0.922 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.356 14.872 -3.897 16.280 hybrid contribution -0.370 0.068 -0.259 0.457 sum -5.726 14.940 -4.156 16.530 Atomic orbital electron populations 1.21859 0.96755 1.01114 1.01396 1.21417 0.94311 0.95527 1.03517 1.21779 0.97442 0.96301 0.96843 0.91310 1.21830 0.98985 0.80441 0.98922 1.48003 1.08883 1.06439 1.68660 1.16699 0.86157 0.81790 0.77912 1.90815 1.12807 1.85116 1.51784 1.26071 1.00563 0.97737 1.06713 1.20680 1.03122 0.87818 1.05723 1.19852 0.88940 0.87012 0.95198 1.86285 1.41157 1.10884 1.82116 1.22953 0.92767 0.88457 1.01620 1.76339 1.19786 1.12432 1.28713 1.85529 1.09477 0.96474 1.61066 1.22185 0.78873 0.99885 1.01363 1.22523 1.02215 0.99287 0.94801 1.20247 0.89682 0.90465 0.92844 0.92765 1.42473 1.19099 1.64014 1.10509 1.19159 0.93570 1.27238 0.97125 0.91258 1.24694 0.98501 1.01349 0.96014 1.69626 1.38158 1.47945 1.02237 0.86326 0.84370 0.79211 0.76582 1.21325 1.21812 1.21373 0.93110 0.92769 0.93321 0.91891 0.90392 0.90061 0.89106 0.80802 0.92142 0.88132 0.92164 0.88577 0.91325 0.93045 0.90242 0.78096 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.67 37.16 0.36 -1.61 16 2 C -0.11 -1.64 5.19 -26.73 -0.14 -1.78 16 3 C -0.10 -1.58 2.14 -90.47 -0.19 -1.77 16 4 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 5 C 0.12 1.88 5.03 -3.71 -0.02 1.86 16 6 N -0.59 -9.13 2.97 -174.15 -0.52 -9.64 16 7 C 0.59 9.30 7.65 -12.66 -0.10 9.21 16 8 O -0.53 -9.49 16.45 5.25 0.09 -9.40 16 9 C -0.18 -2.48 6.10 -36.05 -0.22 -2.70 16 10 C -0.14 -1.73 10.18 -39.90 -0.41 -2.13 16 11 C 0.30 3.85 7.36 -18.42 -0.14 3.71 16 12 O -0.30 -3.37 10.51 -19.63 -0.21 -3.58 16 13 C 0.04 0.30 10.43 101.05 1.05 1.36 16 14 N -0.53 -7.08 11.03 29.19 0.32 -6.76 16 15 S 0.32 4.21 20.18 -107.50 -2.17 2.04 16 16 C 0.10 1.54 5.40 -3.71 -0.02 1.52 16 17 C -0.15 -2.29 5.78 -26.61 -0.15 -2.45 16 18 C 0.18 3.10 2.53 -67.85 -0.17 2.93 16 19 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 20 N -0.72 -15.58 3.72 -53.35 -0.20 -15.78 16 21 C -0.24 -5.99 9.93 -15.06 -0.15 -6.14 16 22 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 24 N -0.93 -26.16 13.06 55.49 0.72 -25.44 16 25 Si 0.90 21.22 29.55 -169.99 -5.02 16.20 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.69 6.70 -51.93 -0.35 0.34 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.36 7.69 -51.93 -0.40 0.96 16 34 H 0.08 1.41 6.64 -51.93 -0.34 1.06 16 35 H 0.09 1.42 5.72 -51.93 -0.30 1.12 16 36 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 37 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 40 H 0.10 1.69 7.74 -51.93 -0.40 1.29 16 41 H 0.07 0.94 3.77 -24.91 -0.09 0.85 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 44 H 0.38 8.92 5.94 -40.82 -0.24 8.68 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 371.42 15.07 5.60 5.60 Total: -1.00 -28.84 371.42 -8.09 -36.94 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.32 Total: 8.15 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -0.39 Total: 1.68 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.33 Total: -57.63 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.12 Total: -12.98 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -2.17 Total: 2.04 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.84 -8.09 -36.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037842341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.377 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds