Wall clock time and date at job start Tue Mar 31 2020 22:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47001 * 2 1 4 4 C 1.50696 * 109.47217 * 120.00109 * 2 1 3 5 5 N 1.28649 * 124.71925 * 120.25358 * 4 2 1 6 6 C 1.33568 * 115.76056 * 180.22785 * 5 4 2 7 7 C 1.47261 * 123.13536 * 179.82832 * 6 5 4 8 8 O 1.21638 * 119.99868 * 186.11048 * 7 6 5 9 9 N 1.34783 * 120.00500 * 6.10805 * 7 6 5 10 10 C 1.46500 * 119.99637 * 356.68466 * 9 7 6 11 11 C 1.46497 * 119.99901 * 176.68745 * 9 7 6 12 12 H 1.08993 * 110.64351 * 358.31040 * 11 9 7 13 13 C 1.54332 * 110.71939 * 121.45782 * 11 9 7 14 14 N 1.47019 * 107.27312 * 140.72836 * 13 11 9 15 15 C 1.36933 * 125.64652 * 181.02145 * 14 13 11 16 16 H 1.08005 * 120.00189 * 5.73129 * 15 14 13 17 17 C 1.38817 * 119.99949 * 185.73594 * 15 14 13 18 18 N 1.31623 * 119.99961 * 34.90193 * 17 15 14 19 19 Si 1.86797 * 119.99828 * 214.90636 * 17 15 14 20 20 H 1.48500 * 109.46852 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.47032 * 59.99850 * 19 17 15 22 22 H 1.48501 * 109.47255 * 299.99562 * 19 17 15 23 23 C 1.47431 * 108.70301 * 1.28791 * 14 13 11 24 24 C 1.55131 * 104.72059 * 335.55080 * 23 14 13 25 25 H 1.08997 * 111.19428 * 279.19453 * 24 23 14 26 26 O 1.42896 * 110.93540 * 155.29109 * 24 23 14 27 27 C 1.35200 * 113.71997 * 359.55716 * 6 5 4 28 28 S 1.70775 * 124.71916 * 300.02631 * 4 2 1 29 29 H 1.09002 * 109.47415 * 299.99754 * 1 2 3 30 30 H 1.08999 * 109.47092 * 60.00233 * 1 2 3 31 31 H 1.08997 * 109.47200 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47415 * 240.00246 * 2 1 3 33 33 H 1.08999 * 109.47008 * 299.99818 * 3 2 1 34 34 H 1.09002 * 109.46835 * 59.99891 * 3 2 1 35 35 H 1.09001 * 109.46784 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47400 * 275.85486 * 10 9 7 37 37 H 1.09010 * 109.47025 * 35.85553 * 10 9 7 38 38 H 1.09004 * 109.46697 * 155.85260 * 10 9 7 39 39 H 1.09001 * 109.87878 * 21.31023 * 13 11 9 40 40 H 1.09002 * 110.00531 * 260.22070 * 13 11 9 41 41 H 0.96993 * 119.99960 * 355.46471 * 18 17 15 42 42 H 1.09001 * 110.36448 * 94.47807 * 23 14 13 43 43 H 1.08995 * 110.36069 * 216.80467 * 23 14 13 44 44 H 0.96696 * 114.00425 * 67.96195 * 26 24 23 45 45 H 1.08000 * 125.58886 * 180.23389 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.7789 -1.7581 1.2181 6 6 3.1160 -2.2447 2.4155 7 6 3.9605 -3.4383 2.5905 8 8 4.1414 -3.8976 3.7023 9 7 4.5330 -4.0220 1.5190 10 6 4.2571 -3.5132 0.1732 11 6 5.4312 -5.1651 1.7002 12 1 5.5509 -5.3956 2.7587 13 6 4.9106 -6.3961 0.9285 14 7 6.0788 -7.0715 0.3448 15 6 6.0432 -8.1975 -0.4335 16 1 5.0943 -8.6112 -0.7417 17 6 7.2267 -8.8073 -0.8265 18 7 8.2632 -8.8164 -0.0153 19 14 7.3482 -9.6149 -2.5065 20 1 8.7064 -10.1891 -2.6825 21 1 7.0993 -8.6008 -3.5623 22 1 6.3358 -10.6964 -2.6103 23 6 7.2954 -6.3393 0.7417 24 6 6.8082 -4.8965 1.0375 25 1 6.6940 -4.3228 0.1179 26 8 7.6926 -4.2349 1.9442 27 6 2.6143 -1.5357 3.4516 28 16 1.6943 -0.2335 2.8350 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4425 0.0005 36 1 3.3304 -3.9509 -0.1979 37 1 4.1579 -2.4282 0.2081 38 1 5.0777 -3.7818 -0.4921 39 1 4.2325 -6.0777 0.1368 40 1 4.3936 -7.0720 1.6098 41 1 8.2224 -8.3409 0.8291 42 1 7.7321 -6.7855 1.6352 43 1 8.0186 -6.3354 -0.0738 44 1 8.5659 -4.0460 1.5746 45 1 2.7693 -1.7559 4.4975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047565394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:17 Heat of formation + Delta-G solvation = -23.380418 kcal Electronic energy + Delta-G solvation = -27812.565822 eV Core-core repulsion = 23957.395056 eV Total energy + Delta-G solvation = -3855.170766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.98686 -40.56890 -39.36919 -36.97486 -36.57546 -36.43108 -33.99726 -31.23095 -30.47496 -29.45722 -28.02815 -27.90161 -27.02272 -26.03221 -24.18441 -22.43246 -21.85747 -21.30267 -20.36583 -19.76581 -19.57703 -18.47543 -17.67818 -17.20136 -16.84581 -16.80627 -16.13333 -15.96190 -15.53832 -15.49310 -15.33766 -15.13298 -14.74840 -14.48051 -14.27089 -14.06748 -13.90610 -13.76815 -13.55370 -13.44705 -13.17762 -12.99964 -12.94237 -12.68298 -12.56288 -12.46942 -12.12419 -11.92149 -11.88660 -11.84625 -11.81459 -11.42811 -11.13245 -10.71001 -10.52944 -10.44632 -10.00860 -9.72742 -9.16780 -8.52401 -5.34015 -0.57343 0.20216 0.54201 0.80642 1.57050 1.65358 1.74702 1.85689 2.11657 2.55942 2.77818 2.86713 3.12269 3.40616 3.51668 3.60057 3.75791 3.86098 3.92651 4.06563 4.13237 4.15579 4.17910 4.26374 4.28257 4.44640 4.61635 4.64858 4.72469 4.79248 4.80080 4.86385 4.93381 4.93780 4.97900 5.10574 5.18106 5.35083 5.36912 5.38434 5.55436 6.12364 6.20907 6.39232 6.66596 6.74247 6.88588 7.62087 8.15480 8.89026 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.002790 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.498392 B =10034.528565 C =10784.990437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.021 4.021 3 C -0.146 4.146 4 C 0.020 3.980 5 N -0.457 5.457 6 C -0.008 4.008 7 C 0.584 3.416 8 O -0.577 6.577 9 N -0.582 5.582 10 C 0.077 3.923 11 C 0.147 3.853 12 H 0.086 0.914 13 C 0.138 3.862 14 N -0.617 5.617 15 C -0.364 4.364 16 H 0.069 0.931 17 C -0.073 4.073 18 N -0.938 5.938 19 Si 1.124 2.876 20 H -0.291 1.291 21 H -0.275 1.275 22 H -0.275 1.275 23 C 0.126 3.874 24 C 0.098 3.902 25 H 0.090 0.910 26 O -0.566 6.566 27 C -0.241 4.241 28 S 0.301 5.699 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.121 0.879 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.014 0.986 41 H 0.256 0.744 42 H 0.008 0.992 43 H 0.043 0.957 44 H 0.397 0.603 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.019 27.050 -0.808 31.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.043 4.043 3 C -0.205 4.205 4 C -0.259 4.259 5 N -0.172 5.172 6 C -0.143 4.143 7 C 0.371 3.629 8 O -0.457 6.457 9 N -0.312 5.312 10 C -0.065 4.065 11 C 0.042 3.958 12 H 0.104 0.896 13 C 0.011 3.989 14 N -0.346 5.346 15 C -0.491 4.491 16 H 0.087 0.913 17 C -0.270 4.270 18 N -0.581 5.581 19 Si 0.947 3.053 20 H -0.217 1.217 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.001 4.001 24 C 0.037 3.963 25 H 0.108 0.892 26 O -0.374 6.374 27 C -0.383 4.383 28 S 0.560 5.440 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.138 0.862 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.067 0.933 42 H 0.025 0.975 43 H 0.062 0.938 44 H 0.247 0.753 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -15.881 26.374 -0.953 30.801 hybrid contribution 0.492 -0.910 1.346 1.698 sum -15.389 25.464 0.393 29.755 Atomic orbital electron populations 1.21957 0.91748 1.02621 1.04173 1.20018 0.97085 0.95946 0.91256 1.21961 1.01416 0.92932 1.04160 1.28002 0.99234 0.96638 1.01979 1.67217 1.13714 1.11603 1.24703 1.19974 1.05493 0.99805 0.89003 1.17684 0.78943 0.82518 0.83708 1.90767 1.63699 1.65512 1.25755 1.47590 1.44802 1.30406 1.08398 1.22428 1.00647 1.02933 0.80475 1.21727 0.88146 0.85538 1.00386 0.89590 1.21536 0.90801 0.91511 0.95009 1.44656 1.01245 1.29033 1.59649 1.19990 0.95437 1.06971 1.26726 0.91305 1.27266 0.92426 1.00745 1.06523 1.70989 1.36975 1.39482 1.10659 0.82737 0.75817 0.75576 0.71184 1.21685 1.20103 1.20082 1.22101 0.90275 0.90776 0.96902 1.23232 0.89183 0.91757 0.92164 0.89248 1.86448 1.28680 1.79538 1.42684 1.26866 1.03919 1.01623 1.05941 1.82348 1.42121 1.21951 0.97590 0.91260 0.89206 0.92973 0.88172 0.89226 0.91291 0.92749 0.92331 0.86182 0.91653 0.93232 0.96766 0.93299 0.97473 0.93831 0.75280 0.79319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.09 71.98 0.65 -0.37 16 2 C -0.02 -0.21 3.34 -11.54 -0.04 -0.25 16 3 C -0.15 -0.95 9.09 71.98 0.65 -0.30 16 4 C 0.02 0.33 6.00 88.57 0.53 0.86 16 5 N -0.46 -10.75 6.73 -180.84 -1.22 -11.96 16 6 C -0.01 -0.23 6.50 40.55 0.26 0.03 16 7 C 0.58 21.51 7.65 86.61 0.66 22.17 16 8 O -0.58 -25.08 16.10 -4.15 -0.07 -25.15 16 9 N -0.58 -20.98 2.89 -819.96 -2.37 -23.34 16 10 C 0.08 2.24 8.25 127.77 1.05 3.29 16 11 C 0.15 6.17 3.08 46.18 0.14 6.31 16 12 H 0.09 4.09 7.00 -2.39 -0.02 4.07 16 13 C 0.14 6.38 6.88 86.73 0.60 6.98 16 14 N -0.62 -33.04 3.37 -691.51 -2.33 -35.37 16 15 C -0.36 -21.23 10.01 84.04 0.84 -20.39 16 16 H 0.07 3.98 8.03 -2.91 -0.02 3.96 16 17 C -0.07 -4.26 4.96 84.86 0.42 -3.84 16 18 N -0.94 -58.57 12.95 21.65 0.28 -58.29 16 19 Si 1.12 51.18 30.03 68.60 2.06 53.24 16 20 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 23 C 0.13 6.21 4.91 86.93 0.43 6.64 16 24 C 0.10 3.86 3.95 32.07 0.13 3.99 16 25 H 0.09 3.20 6.17 -2.39 -0.01 3.19 16 26 O -0.57 -20.65 13.47 -148.98 -2.01 -22.66 16 27 C -0.24 -5.32 10.62 67.12 0.71 -4.60 16 28 S 0.30 3.89 22.22 -56.49 -1.26 2.63 16 29 H 0.07 0.34 7.91 -2.39 -0.02 0.33 16 30 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.07 0.32 7.92 -2.39 -0.02 0.30 16 35 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.06 1.67 8.09 -2.39 -0.02 1.65 16 37 H 0.12 3.16 5.20 -2.38 -0.01 3.15 16 38 H 0.06 1.90 6.15 -2.39 -0.01 1.88 16 39 H 0.05 2.17 7.07 -2.39 -0.02 2.15 16 40 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.26 16.30 5.75 -92.71 -0.53 15.77 16 42 H 0.01 0.41 7.07 -2.39 -0.02 0.39 16 43 H 0.04 2.26 7.48 -2.39 -0.02 2.24 16 44 H 0.40 10.54 9.12 -74.06 -0.68 9.86 16 45 H 0.19 4.01 8.04 -2.91 -0.02 3.99 16 Total: -1.00 -79.44 373.25 0.73 -78.71 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.58 Total: 21.68 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 7.05 Total: 20.52 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -5.63 Total: -128.97 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -2.07 Total: -47.81 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.06 Total: 53.24 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -1.26 Total: 2.63 kcal Total: -79.44 0.73 -78.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047565394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.328 kcal (2) G-P(sol) polarization free energy of solvation -79.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds