Wall clock time and date at job start Tue Mar 31 2020 22:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47039 * 2 1 4 4 C 1.50696 * 109.47345 * 120.00438 * 2 1 3 5 5 N 1.29434 * 124.80120 * 300.04269 * 4 2 1 6 6 C 1.30944 * 117.36541 * 179.69666 * 5 4 2 7 7 C 1.35662 * 114.18788 * 0.48039 * 6 5 4 8 8 C 1.46680 * 126.13249 * 179.82618 * 7 6 5 9 9 O 1.21686 * 120.00194 * 173.27519 * 8 7 6 10 10 N 1.34784 * 119.99788 * 353.27746 * 8 7 6 11 11 C 1.46500 * 119.99797 * 5.08943 * 10 8 7 12 12 C 1.46501 * 119.99760 * 185.09471 * 10 8 7 13 13 H 1.08994 * 110.89118 * 357.57262 * 12 10 8 14 14 C 1.54909 * 111.00049 * 121.45316 * 12 10 8 15 15 N 1.47428 * 104.83130 * 155.08321 * 14 12 10 16 16 C 1.36930 * 125.65081 * 155.83727 * 15 14 12 17 17 H 1.08003 * 120.00395 * 359.97438 * 16 15 14 18 18 C 1.38819 * 119.99972 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99802 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99942 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46987 * 59.99188 * 20 18 16 22 22 H 1.48498 * 109.47181 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46459 * 299.99485 * 20 18 16 24 24 C 1.47023 * 108.70140 * 335.86896 * 15 14 12 25 25 C 1.54328 * 107.27050 * 1.05625 * 24 15 14 26 26 H 1.08997 * 110.72352 * 263.82563 * 25 24 15 27 27 O 1.42900 * 110.71569 * 140.55627 * 25 24 15 28 28 S 1.70947 * 124.80826 * 119.99922 * 4 2 1 29 29 H 1.09007 * 109.47140 * 59.99983 * 1 2 3 30 30 H 1.09007 * 109.46995 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47134 * 299.99541 * 1 2 3 32 32 H 1.09006 * 109.47078 * 240.00435 * 2 1 3 33 33 H 1.09004 * 109.47455 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47464 * 300.00418 * 3 2 1 35 35 H 1.09006 * 109.47160 * 59.99849 * 3 2 1 36 36 H 1.07999 * 122.90987 * 180.30446 * 6 5 4 37 37 H 1.09003 * 109.46987 * 66.49994 * 11 10 8 38 38 H 1.09000 * 109.47415 * 306.49974 * 11 10 8 39 39 H 1.09001 * 109.46652 * 186.49777 * 11 10 8 40 40 H 1.09004 * 110.36508 * 273.91783 * 14 12 10 41 41 H 1.08996 * 110.37248 * 36.13416 * 14 12 10 42 42 H 0.97005 * 119.99790 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.88315 * 120.47790 * 24 15 14 44 44 H 1.09001 * 109.88571 * 241.49191 * 24 15 14 45 45 H 0.96700 * 114.00612 * 66.48463 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7769 -0.3507 2.4472 6 6 2.2848 -1.0793 3.4094 7 6 3.0321 -2.1263 2.9786 8 6 3.7221 -3.1037 3.8273 9 8 4.2622 -4.0716 3.3252 10 7 3.7577 -2.9297 5.1634 11 6 3.0145 -1.8273 5.7785 12 6 4.5398 -3.8430 6.0004 13 1 4.9953 -4.6287 5.3977 14 6 5.6120 -3.0727 6.8108 15 7 5.8764 -3.9201 7.9878 16 6 7.0269 -3.9183 8.7303 17 1 7.8381 -3.2554 8.4677 18 6 7.1511 -4.7693 9.8199 19 7 6.1628 -5.5776 10.1397 20 14 8.7204 -4.7663 10.8333 21 1 8.9362 -3.4141 11.4076 22 1 8.6017 -5.7575 11.9327 23 1 9.8707 -5.1248 9.9652 24 6 4.7004 -4.7681 8.2319 25 6 3.6664 -4.4450 7.1327 26 1 2.9399 -3.7149 7.4892 27 8 3.0126 -5.6354 6.6882 28 16 3.0193 -2.1062 1.2166 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.1249 -0.8637 4.4555 37 1 1.9448 -1.9963 5.6543 38 1 3.2922 -0.8891 5.2982 39 1 3.2533 -1.7763 6.8408 40 1 6.5195 -2.9510 6.2194 41 1 5.2282 -2.1005 7.1198 42 1 6.2494 -6.1720 10.9014 43 1 4.9835 -5.8193 8.1772 44 1 4.2818 -4.5477 9.2139 45 1 2.4539 -6.0512 7.3590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047659163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:48 Heat of formation + Delta-G solvation = 12.880091 kcal Electronic energy + Delta-G solvation = -27416.030888 eV Core-core repulsion = 23562.432496 eV Total energy + Delta-G solvation = -3853.598392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.63194 -39.47922 -37.83313 -35.86599 -35.25822 -34.83915 -32.10783 -30.42307 -28.36661 -27.68894 -27.55154 -27.08491 -25.88452 -24.40185 -22.64314 -21.65621 -20.45830 -19.70571 -19.28052 -18.16155 -17.11401 -16.98870 -16.42500 -15.87088 -15.62061 -15.44282 -14.84279 -14.60198 -14.59698 -14.42222 -14.04695 -13.86216 -13.27967 -13.13482 -13.05220 -12.71281 -12.49844 -12.41221 -12.26072 -12.07685 -12.00326 -11.62524 -11.50103 -11.49636 -11.27156 -11.17666 -10.90710 -10.81680 -10.29347 -10.17066 -9.98598 -9.85894 -9.65932 -9.60601 -9.33273 -9.10309 -8.75047 -8.47734 -6.96589 -5.79817 -3.15392 0.09913 0.96538 1.49654 2.33293 3.05978 3.14834 3.37370 3.41696 3.42800 3.74875 4.39627 4.41310 4.47009 4.61116 4.66221 4.68036 4.97711 5.01564 5.04692 5.10302 5.26738 5.32288 5.38062 5.41671 5.45312 5.50683 5.53842 5.55899 5.65847 5.73987 5.79330 5.83862 5.94712 5.99587 6.05957 6.40919 6.51377 6.78147 7.30231 7.38247 7.42156 7.44669 7.69760 8.11834 8.16043 8.16996 9.10390 9.70472 10.33060 11.31439 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026494 B = 0.002419 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.570185 B =11572.345606 C =11850.202296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.018 4.018 3 C -0.140 4.140 4 C 0.042 3.958 5 N -0.474 5.474 6 C 0.060 3.940 7 C -0.286 4.286 8 C 0.592 3.408 9 O -0.532 6.532 10 N -0.585 5.585 11 C 0.056 3.944 12 C 0.134 3.866 13 H 0.118 0.882 14 C 0.132 3.868 15 N -0.598 5.598 16 C -0.232 4.232 17 H 0.081 0.919 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.916 3.084 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.284 1.284 24 C 0.152 3.848 25 C 0.066 3.934 26 H 0.057 0.943 27 O -0.560 6.560 28 S 0.217 5.783 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.208 0.792 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.027 0.973 42 H 0.254 0.746 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.016 12.375 -17.592 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.040 4.040 3 C -0.199 4.199 4 C -0.233 4.233 5 N -0.188 5.188 6 C -0.097 4.097 7 C -0.410 4.410 8 C 0.379 3.621 9 O -0.409 6.409 10 N -0.317 5.317 11 C -0.086 4.086 12 C 0.030 3.970 13 H 0.136 0.864 14 C 0.004 3.996 15 N -0.326 5.326 16 C -0.360 4.360 17 H 0.098 0.902 18 C -0.202 4.202 19 N -0.569 5.569 20 Si 0.746 3.254 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.210 1.210 24 C 0.027 3.973 25 C 0.005 3.995 26 H 0.075 0.925 27 O -0.365 6.365 28 S 0.477 5.523 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.224 0.776 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -12.184 11.688 -18.959 25.387 hybrid contribution 0.330 0.018 2.227 2.251 sum -11.854 11.707 -16.732 23.612 Atomic orbital electron populations 1.21809 0.92625 1.02478 1.02966 1.19878 0.97090 0.96211 0.90831 1.21810 1.01264 0.93843 1.02969 1.27598 1.00134 0.98198 0.97372 1.66154 1.23561 1.30612 0.98427 1.23703 0.94171 0.90176 1.01686 1.25755 1.11975 1.05378 0.97927 1.16700 0.79714 0.84046 0.81636 1.90848 1.46612 1.30077 1.73404 1.47452 1.48759 1.30157 1.05322 1.22409 0.95938 0.89433 1.00844 1.22508 0.91325 0.92033 0.91085 0.86440 1.21794 0.95414 0.93451 0.88906 1.44223 1.15033 1.43441 1.29895 1.19021 0.91876 1.18678 1.06434 0.90160 1.24833 0.98259 0.98386 0.98752 1.69920 1.31055 1.26496 1.29458 0.86137 0.82395 0.77268 0.79588 1.21069 1.21526 1.21011 1.21855 0.85223 0.96653 0.93583 1.23569 0.94260 0.86307 0.95327 0.92532 1.86505 1.65917 1.41548 1.42491 1.84071 1.43922 1.23713 1.00610 0.91537 0.92460 0.91299 0.89222 0.92436 0.91539 0.91298 0.77607 0.91501 0.90514 0.89064 0.93247 0.95589 0.93522 0.92088 0.93261 0.77908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.17 37.16 0.34 -0.54 16 2 C -0.02 -0.13 3.35 -91.78 -0.31 -0.43 16 3 C -0.14 -0.88 9.17 37.16 0.34 -0.54 16 4 C 0.04 0.42 5.90 -13.29 -0.08 0.34 16 5 N -0.47 -5.39 10.49 -11.50 -0.12 -5.51 16 6 C 0.06 0.69 9.54 -18.85 -0.18 0.51 16 7 C -0.29 -3.92 6.42 -37.10 -0.24 -4.16 16 8 C 0.59 10.07 7.64 -12.85 -0.10 9.98 16 9 O -0.53 -11.02 16.36 5.20 0.09 -10.94 16 10 N -0.59 -9.30 2.91 -173.02 -0.50 -9.80 16 11 C 0.06 0.64 7.29 59.85 0.44 1.08 16 12 C 0.13 2.58 3.14 -65.78 -0.21 2.38 16 13 H 0.12 2.63 7.02 -51.93 -0.36 2.27 16 14 C 0.13 2.71 6.76 -2.53 -0.02 2.69 16 15 N -0.60 -15.01 3.39 -170.07 -0.58 -15.58 16 16 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 17 H 0.08 2.12 7.83 -52.48 -0.41 1.70 16 18 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 19 N -0.92 -26.52 10.31 55.49 0.57 -25.95 16 20 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.15 3.60 5.15 -3.06 -0.02 3.59 16 25 C 0.07 1.25 3.82 -24.89 -0.10 1.15 16 26 H 0.06 0.94 6.65 -51.93 -0.35 0.60 16 27 O -0.56 -10.40 13.39 -35.23 -0.47 -10.87 16 28 S 0.22 2.50 23.00 -107.50 -2.47 0.02 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.49 8.12 -51.93 -0.42 0.07 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.21 1.94 3.62 -52.49 -0.19 1.75 16 37 H 0.07 0.64 7.09 -51.93 -0.37 0.27 16 38 H 0.08 0.73 5.82 -51.93 -0.30 0.42 16 39 H 0.09 1.05 6.04 -51.93 -0.31 0.73 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.03 0.50 6.66 -51.93 -0.35 0.15 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.06 1.64 7.29 -51.93 -0.38 1.26 16 44 H 0.05 1.25 7.50 -51.93 -0.39 0.86 16 45 H 0.37 5.30 9.12 45.56 0.42 5.72 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -34.22 371.92 -8.79 -43.01 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.51 Total: 3.95 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -0.37 Total: 9.25 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.63 Total: -56.84 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.39 Total: -21.80 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.47 Total: 0.02 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.22 -8.79 -43.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047659163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.886 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds