Wall clock time and date at job start Tue Mar 31 2020 23:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46707 * 2 1 4 4 C 1.50694 * 109.47195 * 120.00058 * 2 1 3 5 5 N 1.28642 * 124.72204 * 120.24702 * 4 2 1 6 6 C 1.33559 * 115.77224 * 180.18809 * 5 4 2 7 7 C 1.47263 * 123.14570 * 179.83066 * 6 5 4 8 8 O 1.21634 * 119.99924 * 179.72514 * 7 6 5 9 9 N 1.34775 * 119.99950 * 359.72849 * 7 6 5 10 10 C 1.46504 * 119.99742 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46952 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.67438 * 300.76551 * 11 10 9 13 13 C 1.53288 * 109.68307 * 180.24885 * 11 10 9 14 14 O 1.42963 * 109.22631 * 187.97000 * 13 11 10 15 15 C 1.42964 * 114.16205 * 62.58115 * 14 13 11 16 16 C 1.53300 * 109.22194 * 297.41886 * 15 14 13 17 17 N 1.47148 * 109.68243 * 61.28116 * 11 10 9 18 18 C 1.36937 * 120.98616 * 350.23490 * 17 11 10 19 19 H 1.07999 * 119.99707 * 31.05690 * 18 17 11 20 20 C 1.38810 * 120.00027 * 211.05681 * 18 17 11 21 21 N 1.31619 * 120.00446 * 10.78248 * 20 18 17 22 22 Si 1.86805 * 119.99834 * 190.77980 * 20 18 17 23 23 H 1.48495 * 109.47265 * 90.00076 * 22 20 18 24 24 H 1.48498 * 109.47167 * 210.00240 * 22 20 18 25 25 H 1.48505 * 109.46886 * 330.00243 * 22 20 18 26 26 C 1.35208 * 113.71175 * 359.55628 * 6 5 4 27 27 S 1.70769 * 124.72180 * 299.97432 * 4 2 1 28 28 H 1.09000 * 109.47235 * 299.99730 * 1 2 3 29 29 H 1.08997 * 109.47359 * 60.00531 * 1 2 3 30 30 H 1.09012 * 109.46708 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46717 * 240.00203 * 2 1 3 32 32 H 1.09000 * 109.47053 * 60.00159 * 3 2 1 33 33 H 1.08999 * 109.46743 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47076 * 299.99923 * 3 2 1 35 35 H 0.96994 * 120.00408 * 0.02562 * 9 7 6 36 36 H 1.08990 * 109.47458 * 59.99791 * 10 9 7 37 37 H 1.08999 * 109.46759 * 299.99613 * 10 9 7 38 38 H 1.09006 * 109.51483 * 307.89621 * 13 11 10 39 39 H 1.09006 * 109.51491 * 67.99353 * 13 11 10 40 40 H 1.08995 * 109.51522 * 57.34715 * 15 14 13 41 41 H 1.09006 * 109.51027 * 177.50110 * 15 14 13 42 42 H 1.08999 * 109.67729 * 172.03049 * 16 15 14 43 43 H 1.09005 * 109.68393 * 292.58286 * 16 15 14 44 44 H 0.96995 * 119.99955 * 179.97438 * 21 20 18 45 45 H 1.08002 * 125.58734 * 180.19782 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7788 -1.7581 1.2182 6 6 3.1167 -2.2443 2.4154 7 6 3.9613 -3.4379 2.5905 8 8 4.2379 -3.8284 3.7087 9 7 4.4277 -4.0976 1.5117 10 6 5.2674 -5.2853 1.6860 11 6 5.6593 -5.8385 0.3144 12 1 4.7616 -6.0960 -0.2477 13 6 6.5332 -7.0854 0.4910 14 8 7.0459 -7.4852 -0.7822 15 6 7.8961 -6.5167 -1.4011 16 6 7.0919 -5.2406 -1.6747 17 7 6.4339 -4.8288 -0.4244 18 6 6.5397 -3.5442 0.0381 19 1 6.5220 -3.3495 1.1002 20 6 6.6696 -2.4923 -0.8583 21 7 6.4796 -2.6965 -2.1447 22 14 7.1139 -0.7869 -0.2390 23 1 8.5909 -0.6334 -0.2282 24 1 6.5165 0.2361 -1.1344 25 1 6.5875 -0.6076 1.1380 26 6 2.6157 -1.5348 3.4515 27 16 1.6955 -0.2328 2.8350 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 4.2074 -3.7860 0.6200 36 1 4.7138 -6.0437 2.2393 37 1 6.1671 -5.0161 2.2393 38 1 7.3616 -6.8574 1.1618 39 1 5.9347 -7.8928 0.9131 40 1 8.7294 -6.2866 -0.7372 41 1 8.2778 -6.9151 -2.3412 42 1 7.7616 -4.4506 -2.0147 43 1 6.3387 -5.4377 -2.4376 44 1 6.5700 -1.9614 -2.7709 45 1 2.7709 -1.7549 4.4974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051164325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:08 Heat of formation + Delta-G solvation = -16.293037 kcal Electronic energy + Delta-G solvation = -28421.588389 eV Core-core repulsion = 24566.724955 eV Total energy + Delta-G solvation = -3854.863434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.22411 -38.81275 -38.03985 -35.57464 -35.25576 -33.55613 -31.52183 -30.42560 -29.90487 -27.34041 -27.26362 -26.38141 -24.78341 -23.41710 -22.79166 -21.49287 -20.54268 -19.72739 -19.35820 -18.12111 -16.85730 -16.16475 -15.85060 -15.70821 -15.49599 -15.01092 -14.79615 -14.55086 -14.31352 -14.18484 -13.89002 -13.64150 -13.50966 -13.17217 -12.92119 -12.88234 -12.59046 -12.34925 -11.92840 -11.84309 -11.77750 -11.53793 -11.34981 -11.04212 -11.01179 -10.86747 -10.72870 -10.39294 -10.21792 -10.01799 -9.76530 -9.64626 -9.58204 -9.53253 -8.96933 -8.80814 -8.61288 -8.22625 -6.68723 -5.86043 -3.34858 0.65959 1.31987 1.71682 2.27637 3.30938 3.37532 3.41059 3.69911 3.84349 4.07377 4.39105 4.55385 4.73188 4.93900 4.95705 5.16841 5.28765 5.33245 5.36648 5.42202 5.46767 5.61407 5.62081 5.69268 5.74659 5.84424 5.87771 6.01094 6.05275 6.07856 6.10004 6.14900 6.17135 6.24556 6.35598 6.54252 6.77209 7.07901 7.09878 7.51721 7.62962 7.74926 7.88659 8.25837 8.33717 8.77857 9.10528 9.70680 10.29194 11.20926 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012402 B = 0.004296 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.149919 B = 6516.327047 C = 7576.619144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.022 4.022 3 C -0.148 4.148 4 C 0.038 3.962 5 N -0.427 5.427 6 C 0.025 3.975 7 C 0.584 3.416 8 O -0.560 6.560 9 N -0.672 5.672 10 C 0.134 3.866 11 C 0.125 3.875 12 H 0.042 0.958 13 C 0.057 3.943 14 O -0.392 6.392 15 C 0.035 3.965 16 C 0.144 3.856 17 N -0.590 5.590 18 C -0.254 4.254 19 H 0.071 0.929 20 C 0.017 3.983 21 N -0.898 5.898 22 Si 0.895 3.105 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.280 1.280 26 C -0.234 4.234 27 S 0.181 5.819 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.425 0.575 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.029 0.971 44 H 0.254 0.746 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.345 4.419 4.903 12.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.044 4.044 3 C -0.207 4.207 4 C -0.242 4.242 5 N -0.141 5.141 6 C -0.110 4.110 7 C 0.367 3.633 8 O -0.440 6.440 9 N -0.322 5.322 10 C 0.009 3.991 11 C 0.018 3.982 12 H 0.059 0.941 13 C -0.022 4.022 14 O -0.311 6.311 15 C -0.043 4.043 16 C 0.019 3.981 17 N -0.316 5.316 18 C -0.383 4.383 19 H 0.089 0.911 20 C -0.183 4.183 21 N -0.541 5.541 22 Si 0.725 3.275 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.205 1.205 26 C -0.376 4.376 27 S 0.438 5.562 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.265 0.735 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.047 0.953 44 H 0.064 0.936 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.551 4.626 5.361 12.707 hybrid contribution 0.970 0.606 0.060 1.145 sum -9.581 5.231 5.421 12.188 Atomic orbital electron populations 1.21918 0.93238 1.02703 1.02474 1.19852 0.95891 0.95470 0.93224 1.21936 1.02228 0.94053 1.02433 1.27187 1.00618 0.97150 0.99285 1.66991 1.11037 1.10136 1.25925 1.20553 1.03295 1.00040 0.87092 1.17035 0.79645 0.81731 0.84935 1.90745 1.60736 1.68071 1.24473 1.45877 1.48444 1.27883 1.10034 1.21242 0.94392 0.86328 0.97095 1.21424 0.94257 0.90706 0.91859 0.94092 1.22854 0.97071 0.96761 0.85553 1.87798 1.66587 1.42804 1.33900 1.23361 0.92820 0.91692 0.96447 1.21416 0.95478 0.93208 0.87988 1.44080 1.56083 1.06598 1.24843 1.19160 1.45654 0.81746 0.91732 0.91133 1.25056 1.00184 0.97460 0.95613 1.69971 1.51928 1.31141 1.01082 0.86393 0.78118 0.84800 0.78198 1.21497 1.21517 1.20536 1.26518 1.04801 1.00501 1.05747 1.82517 1.46134 1.26543 1.01023 0.92377 0.91169 0.91923 0.87486 0.92359 0.91805 0.91093 0.73529 0.92075 0.91244 0.93484 0.89899 0.94125 0.90248 0.88940 0.95275 0.93558 0.79634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.09 37.16 0.34 -0.96 16 2 C -0.02 -0.27 3.34 -91.77 -0.31 -0.57 16 3 C -0.15 -1.55 9.09 37.16 0.34 -1.22 16 4 C 0.04 0.56 6.00 -13.62 -0.08 0.48 16 5 N -0.43 -7.84 10.12 -8.51 -0.09 -7.93 16 6 C 0.03 0.47 6.70 -84.53 -0.57 -0.10 16 7 C 0.58 12.10 7.80 -12.59 -0.10 12.00 16 8 O -0.56 -12.37 16.71 5.25 0.09 -12.28 16 9 N -0.67 -13.99 3.80 -61.43 -0.23 -14.22 16 10 C 0.13 2.60 4.44 -4.04 -0.02 2.58 16 11 C 0.12 2.53 3.20 -67.43 -0.22 2.31 16 12 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 13 C 0.06 1.02 6.29 37.31 0.23 1.26 16 14 O -0.39 -7.75 10.74 -35.23 -0.38 -8.13 16 15 C 0.03 0.68 6.99 37.31 0.26 0.94 16 16 C 0.14 3.35 5.38 -3.52 -0.02 3.33 16 17 N -0.59 -13.99 3.03 -164.29 -0.50 -14.48 16 18 C -0.25 -6.52 7.11 -15.06 -0.11 -6.63 16 19 H 0.07 1.88 5.81 -52.49 -0.30 1.57 16 20 C 0.02 0.44 5.06 -17.43 -0.09 0.35 16 21 N -0.90 -24.67 11.13 55.49 0.62 -24.05 16 22 Si 0.89 21.78 29.57 -169.99 -5.03 16.75 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 C -0.23 -3.56 10.62 29.65 0.31 -3.25 16 27 S 0.18 2.16 22.22 -107.50 -2.39 -0.22 16 28 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.06 0.52 7.91 -51.93 -0.41 0.11 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.42 9.53 6.90 -40.82 -0.28 9.25 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.44 7.53 -51.93 -0.39 1.05 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.09 2.35 6.33 -51.93 -0.33 2.02 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.19 2.55 8.03 -52.49 -0.42 2.13 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -30.68 376.16 -9.01 -39.69 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.76 Total: 8.68 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -0.02 Total: 10.53 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.20 Total: -60.69 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.29 Total: -20.41 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.39 Total: -0.22 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.68 -9.01 -39.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051164325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.401 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds