Wall clock time and date at job start Tue Mar 31 2020 23:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46707 * 2 1 4 4 C 1.50694 * 109.47195 * 120.00058 * 2 1 3 5 5 N 1.28642 * 124.72204 * 120.24702 * 4 2 1 6 6 C 1.33559 * 115.77224 * 180.18809 * 5 4 2 7 7 C 1.47263 * 123.14570 * 179.83066 * 6 5 4 8 8 O 1.21634 * 119.99924 * 179.72514 * 7 6 5 9 9 N 1.34775 * 119.99950 * 359.72849 * 7 6 5 10 10 C 1.46504 * 119.99742 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46952 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.67438 * 300.76551 * 11 10 9 13 13 C 1.53288 * 109.68307 * 180.24885 * 11 10 9 14 14 O 1.42963 * 109.22631 * 187.97000 * 13 11 10 15 15 C 1.42964 * 114.16205 * 62.58115 * 14 13 11 16 16 C 1.53300 * 109.22194 * 297.41886 * 15 14 13 17 17 N 1.47148 * 109.68243 * 61.28116 * 11 10 9 18 18 C 1.36937 * 120.98616 * 350.23490 * 17 11 10 19 19 H 1.07999 * 119.99707 * 31.05690 * 18 17 11 20 20 C 1.38810 * 120.00027 * 211.05681 * 18 17 11 21 21 N 1.31619 * 120.00446 * 10.78248 * 20 18 17 22 22 Si 1.86805 * 119.99834 * 190.77980 * 20 18 17 23 23 H 1.48495 * 109.47265 * 90.00076 * 22 20 18 24 24 H 1.48498 * 109.47167 * 210.00240 * 22 20 18 25 25 H 1.48505 * 109.46886 * 330.00243 * 22 20 18 26 26 C 1.35208 * 113.71175 * 359.55628 * 6 5 4 27 27 S 1.70769 * 124.72180 * 299.97432 * 4 2 1 28 28 H 1.09000 * 109.47235 * 299.99730 * 1 2 3 29 29 H 1.08997 * 109.47359 * 60.00531 * 1 2 3 30 30 H 1.09012 * 109.46708 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46717 * 240.00203 * 2 1 3 32 32 H 1.09000 * 109.47053 * 60.00159 * 3 2 1 33 33 H 1.08999 * 109.46743 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47076 * 299.99923 * 3 2 1 35 35 H 0.96994 * 120.00408 * 0.02562 * 9 7 6 36 36 H 1.08990 * 109.47458 * 59.99791 * 10 9 7 37 37 H 1.08999 * 109.46759 * 299.99613 * 10 9 7 38 38 H 1.09006 * 109.51483 * 307.89621 * 13 11 10 39 39 H 1.09006 * 109.51491 * 67.99353 * 13 11 10 40 40 H 1.08995 * 109.51522 * 57.34715 * 15 14 13 41 41 H 1.09006 * 109.51027 * 177.50110 * 15 14 13 42 42 H 1.08999 * 109.67729 * 172.03049 * 16 15 14 43 43 H 1.09005 * 109.68393 * 292.58286 * 16 15 14 44 44 H 0.96995 * 119.99955 * 179.97438 * 21 20 18 45 45 H 1.08002 * 125.58734 * 180.19782 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7788 -1.7581 1.2182 6 6 3.1167 -2.2443 2.4154 7 6 3.9613 -3.4379 2.5905 8 8 4.2379 -3.8284 3.7087 9 7 4.4277 -4.0976 1.5117 10 6 5.2674 -5.2853 1.6860 11 6 5.6593 -5.8385 0.3144 12 1 4.7616 -6.0960 -0.2477 13 6 6.5332 -7.0854 0.4910 14 8 7.0459 -7.4852 -0.7822 15 6 7.8961 -6.5167 -1.4011 16 6 7.0919 -5.2406 -1.6747 17 7 6.4339 -4.8288 -0.4244 18 6 6.5397 -3.5442 0.0381 19 1 6.5220 -3.3495 1.1002 20 6 6.6696 -2.4923 -0.8583 21 7 6.4796 -2.6965 -2.1447 22 14 7.1139 -0.7869 -0.2390 23 1 8.5909 -0.6334 -0.2282 24 1 6.5165 0.2361 -1.1344 25 1 6.5875 -0.6076 1.1380 26 6 2.6157 -1.5348 3.4515 27 16 1.6955 -0.2328 2.8350 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 4.2074 -3.7860 0.6200 36 1 4.7138 -6.0437 2.2393 37 1 6.1671 -5.0161 2.2393 38 1 7.3616 -6.8574 1.1618 39 1 5.9347 -7.8928 0.9131 40 1 8.7294 -6.2866 -0.7372 41 1 8.2778 -6.9151 -2.3412 42 1 7.7616 -4.4506 -2.0147 43 1 6.3387 -5.4377 -2.4376 44 1 6.5700 -1.9614 -2.7709 45 1 2.7709 -1.7549 4.4974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051164325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:04 Heat of formation + Delta-G solvation = -37.075617 kcal Electronic energy + Delta-G solvation = -28422.489589 eV Core-core repulsion = 24566.724955 eV Total energy + Delta-G solvation = -3855.764634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 9.58 seconds Orbital eigenvalues (eV) -41.58095 -40.36333 -39.57025 -37.00656 -36.45623 -35.36120 -33.30804 -32.18384 -31.11229 -29.06957 -28.10313 -27.86085 -26.09949 -25.25544 -24.13588 -23.07223 -21.65599 -21.42528 -20.80958 -19.45264 -18.56778 -17.74007 -17.50958 -17.15886 -16.74303 -16.46566 -16.30229 -16.23098 -15.87982 -15.48264 -15.26867 -15.12031 -15.07351 -14.72927 -14.38308 -14.20982 -13.86530 -13.54974 -13.16730 -13.07079 -13.05835 -12.94616 -12.78700 -12.66485 -12.54306 -12.20706 -12.19308 -12.03539 -11.92653 -11.88492 -11.38301 -11.23763 -10.79601 -10.68037 -10.67021 -10.58415 -10.09326 -9.74327 -8.63499 -7.89742 -5.39141 -0.52714 0.24022 0.55842 0.93603 1.33062 1.35844 1.42158 2.23121 2.37575 2.42554 2.91149 3.02584 3.27517 3.41772 3.68329 3.96032 3.98668 4.07827 4.11364 4.18054 4.21868 4.30483 4.44251 4.46474 4.54895 4.60758 4.64369 4.70338 4.72782 4.82348 4.85977 4.90272 4.98853 5.08427 5.11453 5.24948 5.27360 5.31636 5.46301 5.61505 5.65970 6.27877 6.33822 6.39723 6.68908 7.09608 7.15996 7.74362 8.29876 9.15026 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012402 B = 0.004296 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.149919 B = 6516.327047 C = 7576.619144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.026 4.026 3 C -0.146 4.146 4 C 0.016 3.984 5 N -0.472 5.472 6 C -0.014 4.014 7 C 0.580 3.420 8 O -0.582 6.582 9 N -0.679 5.679 10 C 0.138 3.862 11 C 0.125 3.875 12 H 0.033 0.967 13 C 0.060 3.940 14 O -0.396 6.396 15 C 0.047 3.953 16 C 0.150 3.850 17 N -0.604 5.604 18 C -0.239 4.239 19 H 0.061 0.939 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 0.940 3.060 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.289 1.289 26 C -0.241 4.241 27 S 0.295 5.705 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.091 0.909 35 H 0.416 0.584 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.120 0.880 40 H 0.045 0.955 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.005 0.995 44 H 0.250 0.750 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.691 5.133 6.142 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.049 4.049 3 C -0.204 4.204 4 C -0.264 4.264 5 N -0.187 5.187 6 C -0.149 4.149 7 C 0.364 3.636 8 O -0.464 6.464 9 N -0.328 5.328 10 C 0.015 3.985 11 C 0.019 3.981 12 H 0.051 0.949 13 C -0.019 4.019 14 O -0.315 6.315 15 C -0.031 4.031 16 C 0.024 3.976 17 N -0.330 5.330 18 C -0.369 4.369 19 H 0.079 0.921 20 C -0.221 4.221 21 N -0.567 5.567 22 Si 0.771 3.229 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.215 1.215 26 C -0.383 4.383 27 S 0.553 5.447 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.110 0.890 35 H 0.253 0.747 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.137 0.863 40 H 0.063 0.937 41 H 0.124 0.876 42 H 0.085 0.915 43 H 0.023 0.977 44 H 0.059 0.941 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -11.903 5.333 6.610 14.623 hybrid contribution 1.283 0.433 -0.255 1.378 sum -10.620 5.766 6.354 13.653 Atomic orbital electron populations 1.21906 0.90606 1.02792 1.04381 1.20007 0.97945 0.95680 0.91236 1.21955 1.00508 0.93357 1.04586 1.27743 0.99880 0.96600 1.02139 1.66961 1.12990 1.12167 1.26574 1.20352 1.05418 1.00683 0.88413 1.17417 0.79498 0.82251 0.84429 1.90703 1.61826 1.68989 1.24908 1.45932 1.48764 1.28401 1.09671 1.21247 0.94057 0.86634 0.96609 1.21564 0.94075 0.90908 0.91583 0.94904 1.22964 0.97166 0.96609 0.85112 1.87804 1.66556 1.42523 1.34580 1.23218 0.92055 0.89920 0.97885 1.21256 0.94728 0.94294 0.87310 1.44280 1.56901 1.06726 1.25121 1.19130 1.43866 0.82775 0.91119 0.92136 1.25491 1.01243 0.99570 0.95839 1.70077 1.53666 1.31335 1.01613 0.85684 0.77641 0.82542 0.77055 1.21370 1.21501 1.21535 1.26899 1.04203 1.01254 1.05973 1.82007 1.42747 1.22853 0.97114 0.90527 0.89199 0.92756 0.90083 0.90239 0.94483 0.88971 0.74659 0.89623 0.92708 0.93016 0.86252 0.93703 0.87602 0.91512 0.97653 0.94087 0.78434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.09 71.98 0.65 -1.51 16 2 C -0.03 -0.61 3.34 -11.54 -0.04 -0.65 16 3 C -0.15 -2.80 9.09 71.98 0.65 -2.15 16 4 C 0.02 0.45 6.00 88.57 0.53 0.98 16 5 N -0.47 -17.70 10.12 -180.85 -1.83 -19.53 16 6 C -0.01 -0.52 6.70 40.56 0.27 -0.25 16 7 C 0.58 24.61 7.80 86.62 0.68 25.28 16 8 O -0.58 -26.05 16.71 -4.14 -0.07 -26.12 16 9 N -0.68 -29.11 3.80 -466.52 -1.77 -30.88 16 10 C 0.14 5.41 4.44 86.38 0.38 5.79 16 11 C 0.13 5.05 3.20 44.97 0.14 5.20 16 12 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 13 C 0.06 2.05 6.29 72.08 0.45 2.51 16 14 O -0.40 -14.89 10.74 -148.98 -1.60 -16.49 16 15 C 0.05 1.79 6.99 72.08 0.50 2.29 16 16 C 0.15 7.05 5.38 86.35 0.46 7.51 16 17 N -0.60 -29.14 3.03 -673.70 -2.04 -31.19 16 18 C -0.24 -12.60 7.11 84.03 0.60 -12.00 16 19 H 0.06 3.32 5.81 -2.91 -0.02 3.30 16 20 C -0.02 -1.33 5.06 84.86 0.43 -0.90 16 21 N -0.92 -52.36 11.13 21.65 0.24 -52.12 16 22 Si 0.94 46.03 29.57 68.60 2.03 48.06 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 25 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 26 C -0.24 -7.05 10.62 67.12 0.71 -6.34 16 27 S 0.29 6.26 22.22 -56.49 -1.26 5.00 16 28 H 0.08 0.90 7.92 -2.39 -0.02 0.89 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.08 1.16 7.91 -2.39 -0.02 1.14 16 33 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.42 19.49 6.90 -92.71 -0.64 18.85 16 36 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.05 2.30 7.53 -2.39 -0.02 2.28 16 38 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.12 3.24 8.14 -2.38 -0.02 3.22 16 40 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.11 3.46 8.14 -2.38 -0.02 3.44 16 42 H 0.07 3.49 6.33 -2.39 -0.02 3.47 16 43 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 44 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 45 H 0.20 5.13 8.03 -2.91 -0.02 5.11 16 Total: -1.00 -68.95 376.16 0.50 -68.45 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.37 Total: 29.06 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: 6.44 Total: 25.77 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -5.40 Total: -133.72 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -1.67 Total: -42.61 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -1.26 Total: 5.00 kcal Total: -68.95 0.50 -68.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051164325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.376 kcal (2) G-P(sol) polarization free energy of solvation -68.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.58 seconds