Wall clock time and date at job start Tue Mar 31 2020 23:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53012 * 109.46668 * 2 1 4 4 C 1.50697 * 109.46725 * 180.02562 * 3 2 1 5 5 N 1.29429 * 124.80709 * 90.02947 * 4 3 2 6 6 C 1.30944 * 117.36362 * 179.68239 * 5 4 3 7 7 C 1.50696 * 122.90264 * 180.34170 * 6 5 4 8 8 C 1.35656 * 114.19036 * 0.52107 * 6 5 4 9 9 C 1.46683 * 126.12888 * 179.78622 * 8 6 5 10 10 O 1.21684 * 120.00315 * 359.71315 * 9 8 6 11 11 N 1.34787 * 120.00016 * 179.71408 * 9 8 6 12 12 C 1.46494 * 120.00004 * 179.97438 * 11 9 8 13 13 H 1.09008 * 110.88436 * 37.42922 * 12 11 9 14 14 C 1.54908 * 111.00587 * 273.54798 * 12 11 9 15 15 N 1.47425 * 104.92961 * 204.82382 * 14 12 11 16 16 C 1.36938 * 125.65179 * 204.15650 * 15 14 12 17 17 H 1.08005 * 119.99558 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00146 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47595 * 59.99628 * 20 18 16 22 22 H 1.48504 * 109.46820 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46978 * 299.99208 * 20 18 16 24 24 C 1.47290 * 108.55742 * 24.15407 * 15 14 12 25 25 C 1.54325 * 107.30599 * 358.92448 * 24 15 14 26 26 H 1.08997 * 110.72163 * 96.18354 * 25 24 15 27 27 O 1.42898 * 110.87178 * 219.38109 * 25 24 15 28 28 S 1.70957 * 124.80290 * 269.99115 * 4 3 2 29 29 H 1.08994 * 109.47499 * 60.00348 * 1 2 3 30 30 H 1.09008 * 109.46410 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47368 * 300.00126 * 1 2 3 32 32 H 1.08990 * 109.47112 * 240.00313 * 2 1 3 33 33 H 1.08997 * 109.47358 * 119.99155 * 2 1 3 34 34 H 1.08993 * 109.46744 * 59.99630 * 3 2 1 35 35 H 1.09006 * 109.46539 * 299.99921 * 3 2 1 36 36 H 1.09000 * 109.47331 * 270.19003 * 7 6 5 37 37 H 1.09001 * 109.47280 * 30.19481 * 7 6 5 38 38 H 1.09000 * 109.47071 * 150.19216 * 7 6 5 39 39 H 0.96999 * 119.99460 * 0.02562 * 11 9 8 40 40 H 1.09002 * 110.36632 * 323.71778 * 14 12 11 41 41 H 1.08995 * 110.36781 * 85.93015 * 14 12 11 42 42 H 0.96999 * 120.00175 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.85762 * 239.50064 * 24 15 14 44 44 H 1.08999 * 109.87327 * 118.35916 * 24 15 14 45 45 H 0.96700 * 114.00884 * 293.61196 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4427 0.0000 4 6 3.5469 1.4427 -0.0006 5 7 4.2853 1.4434 -1.0637 6 6 5.5837 1.4497 -0.8946 7 6 6.5588 1.4589 -2.0435 8 6 5.9752 1.4435 0.4042 9 6 7.3591 1.4439 0.8904 10 8 8.2825 1.4449 0.0979 11 7 7.6081 1.4430 2.2151 12 6 8.9902 1.4428 2.7006 13 1 9.6248 2.0623 2.0668 14 6 9.5439 -0.0006 2.7993 15 7 10.6110 0.0705 3.8140 16 6 11.6720 -0.7890 3.9180 17 1 11.7768 -1.6047 3.2179 18 6 12.6122 -0.6124 4.9238 19 7 12.4842 0.3814 5.7773 20 14 14.0599 -1.7844 5.0651 21 1 14.8592 -1.7370 3.8146 22 1 14.9125 -1.3818 6.2125 23 1 13.5593 -3.1657 5.2807 24 6 10.3438 1.2198 4.6955 25 6 9.0609 1.9054 4.1799 26 1 8.1889 1.5588 4.7345 27 8 9.1762 3.3275 4.2600 28 16 4.5232 1.4427 1.4027 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6765 1.9564 -0.8901 36 1 6.7968 0.4334 -2.3263 37 1 6.1140 1.9762 -2.8935 38 1 7.4710 1.9735 -1.7418 39 1 6.8720 1.4418 2.8468 40 1 8.7600 -0.6865 3.1206 41 1 9.9533 -0.3163 1.8398 42 1 13.1414 0.5050 6.4799 43 1 11.1793 1.9189 4.6558 44 1 10.1944 0.8752 5.7187 45 1 9.2240 3.6680 5.1638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078173024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:48 Heat of formation + Delta-G solvation = -24.251567 kcal Electronic energy + Delta-G solvation = -26878.119117 eV Core-core repulsion = 23022.910576 eV Total energy + Delta-G solvation = -3855.208541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = -2.57 seconds Orbital eigenvalues (eV) -40.52394 -39.39831 -37.80548 -35.67507 -35.10508 -34.15428 -32.04250 -31.70369 -29.10117 -28.49010 -27.97172 -26.80731 -24.47963 -23.64994 -22.08467 -21.71113 -20.64621 -20.28260 -19.49848 -18.14670 -17.30947 -16.89571 -16.58080 -15.78412 -15.61054 -15.41804 -15.10522 -14.54196 -14.45646 -14.06300 -14.03829 -13.88054 -13.57265 -13.26834 -12.74939 -12.68786 -12.57329 -12.51928 -12.45709 -12.11092 -12.01868 -11.65263 -11.54483 -11.49679 -11.27702 -11.20208 -10.92637 -10.80862 -10.21789 -10.13106 -9.94829 -9.85655 -9.82260 -9.69488 -9.37217 -9.02148 -8.83408 -8.65616 -6.93802 -5.77960 -3.12449 0.05730 0.94629 1.35963 2.28518 3.13548 3.17593 3.39471 3.43466 3.44769 3.67292 4.41197 4.42446 4.52851 4.57445 4.57822 4.76341 4.94833 5.01976 5.07939 5.14679 5.23834 5.31732 5.40994 5.53203 5.56750 5.61473 5.62447 5.65666 5.69969 5.76637 5.79274 5.82622 6.02844 6.07154 6.24509 6.45884 6.58969 6.81027 7.28420 7.38690 7.43336 7.55346 7.70782 8.06987 8.14147 8.22492 9.12862 9.73094 10.36192 11.34076 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018675 B = 0.002405 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.960536 B =11640.223934 C =11766.228919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.046 4.046 4 C 0.064 3.936 5 N -0.476 5.476 6 C 0.148 3.852 7 C -0.090 4.090 8 C -0.292 4.292 9 C 0.596 3.404 10 O -0.518 6.518 11 N -0.709 5.709 12 C 0.140 3.860 13 H 0.106 0.894 14 C 0.130 3.870 15 N -0.599 5.599 16 C -0.229 4.229 17 H 0.081 0.919 18 C -0.008 4.008 19 N -0.925 5.925 20 Si 0.916 3.084 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.154 3.846 25 C 0.069 3.931 26 H 0.057 0.943 27 O -0.563 6.563 28 S 0.156 5.844 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.394 0.606 40 H 0.023 0.977 41 H 0.053 0.947 42 H 0.254 0.746 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.713 3.724 -7.938 25.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.087 4.087 4 C -0.212 4.212 5 N -0.190 5.190 6 C 0.010 3.990 7 C -0.149 4.149 8 C -0.416 4.416 9 C 0.381 3.619 10 O -0.396 6.396 11 N -0.359 5.359 12 C 0.035 3.965 13 H 0.124 0.876 14 C 0.003 3.997 15 N -0.327 5.327 16 C -0.356 4.356 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.572 5.572 20 Si 0.746 3.254 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.028 3.972 25 C 0.008 3.992 26 H 0.075 0.925 27 O -0.368 6.368 28 S 0.413 5.587 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.228 0.772 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -23.338 3.658 -8.385 25.067 hybrid contribution 0.935 -0.574 0.504 1.208 sum -22.403 3.084 -7.880 23.948 Atomic orbital electron populations 1.21759 0.94749 1.02231 1.02124 1.21551 0.96421 0.94746 1.03161 1.20421 0.84437 0.99177 1.04674 1.27368 1.01660 1.01014 0.91156 1.66078 1.04427 1.17287 1.31232 1.20678 0.89800 0.94739 0.93752 1.20677 0.96997 1.03838 0.93352 1.25527 0.97948 1.20955 0.97168 1.16630 0.85809 0.76760 0.82704 1.90806 1.44147 1.49909 1.54691 1.45834 1.09287 1.74766 1.05966 1.22317 0.80966 0.98858 0.94331 0.87600 1.21842 0.91563 0.92239 0.94085 1.44293 1.25436 1.31798 1.31204 1.19040 0.99254 1.05879 1.11476 0.90150 1.24817 0.99115 0.98628 0.97808 1.69902 1.36815 1.31448 1.19038 0.86134 0.82004 0.80020 0.77227 1.21011 1.21552 1.21100 1.21864 0.91808 0.89541 0.93945 1.23447 0.99567 0.81179 0.94962 0.92471 1.86465 1.97018 1.20676 1.32603 1.83837 0.96657 1.66537 1.11623 0.92363 0.92209 0.92424 0.91071 0.91475 0.89283 0.88414 0.90012 0.90860 0.87971 0.77215 0.95905 0.92920 0.93573 0.91978 0.93190 0.77567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.32 16 2 C -0.12 -0.72 5.92 -26.72 -0.16 -0.88 16 3 C -0.05 -0.30 5.79 -27.88 -0.16 -0.46 16 4 C 0.06 0.64 6.64 -13.29 -0.09 0.55 16 5 N -0.48 -5.89 10.50 -7.71 -0.08 -5.97 16 6 C 0.15 1.99 6.79 -83.90 -0.57 1.42 16 7 C -0.09 -1.12 9.69 36.00 0.35 -0.77 16 8 C -0.29 -4.01 6.48 -37.10 -0.24 -4.25 16 9 C 0.60 9.74 7.78 -12.85 -0.10 9.64 16 10 O -0.52 -9.92 14.02 5.20 0.07 -9.85 16 11 N -0.71 -11.09 5.23 -53.03 -0.28 -11.37 16 12 C 0.14 2.66 3.04 -65.79 -0.20 2.46 16 13 H 0.11 2.27 7.73 -51.92 -0.40 1.87 16 14 C 0.13 2.80 6.92 -2.53 -0.02 2.79 16 15 N -0.60 -15.33 3.40 -169.85 -0.58 -15.91 16 16 C -0.23 -6.38 10.28 -15.06 -0.15 -6.54 16 17 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 18 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 19 N -0.92 -26.68 10.34 55.49 0.57 -26.11 16 20 Si 0.92 22.07 29.55 -169.99 -5.02 17.05 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 C 0.15 3.62 5.16 -2.92 -0.02 3.61 16 25 C 0.07 1.25 3.95 -24.90 -0.10 1.16 16 26 H 0.06 0.92 8.00 -51.93 -0.42 0.50 16 27 O -0.56 -9.58 13.40 -35.23 -0.47 -10.05 16 28 S 0.16 1.57 22.31 -107.50 -2.40 -0.83 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 1.43 6.02 -51.93 -0.31 1.12 16 39 H 0.39 5.15 7.70 -40.82 -0.31 4.83 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.06 1.65 7.31 -51.93 -0.38 1.27 16 44 H 0.05 1.26 7.52 -51.93 -0.39 0.87 16 45 H 0.38 4.81 9.12 45.56 0.42 5.23 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -33.23 382.98 -9.59 -42.82 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.99 Total: 6.36 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -1.18 Total: 8.09 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.36 Total: -59.37 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.40 Total: -19.90 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.40 Total: -0.83 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.23 -9.59 -42.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078173024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.571 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -2.57 seconds