Wall clock time and date at job start Tue Mar 31 2020 23:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 C 1.53004 * 109.47211 * 120.00327 * 2 1 3 5 5 C 1.50701 * 109.47345 * 64.99489 * 4 2 1 6 6 N 1.28646 * 124.71821 * 90.28492 * 5 4 2 7 7 C 1.33558 * 115.76762 * 180.15527 * 6 5 4 8 8 C 1.47267 * 123.14204 * 179.83224 * 7 6 5 9 9 O 1.21634 * 119.99955 * 179.73090 * 8 7 6 10 10 N 1.34773 * 120.00209 * 359.72333 * 8 7 6 11 11 C 1.46495 * 120.00228 * 180.02562 * 10 8 7 12 12 H 1.09005 * 110.88491 * 37.43462 * 11 10 8 13 13 C 1.54909 * 111.00687 * 273.55146 * 11 10 8 14 14 N 1.47428 * 104.83131 * 204.91337 * 13 11 10 15 15 C 1.36933 * 125.64624 * 204.09001 * 14 13 11 16 16 H 1.07997 * 120.00255 * 356.50750 * 15 14 13 17 17 C 1.38815 * 120.00201 * 176.51219 * 15 14 13 18 18 N 1.31610 * 120.00358 * 211.30819 * 17 15 14 19 19 Si 1.86802 * 119.99642 * 31.02779 * 17 15 14 20 20 H 1.48507 * 109.47290 * 275.58364 * 19 17 15 21 21 H 1.48497 * 109.47428 * 35.58074 * 19 17 15 22 22 H 1.48501 * 109.47294 * 155.58419 * 19 17 15 23 23 C 1.47022 * 108.70380 * 24.36045 * 14 13 11 24 24 C 1.54335 * 107.26290 * 358.58036 * 23 14 13 25 25 H 1.09002 * 110.51563 * 96.45809 * 24 23 14 26 26 O 1.42901 * 111.00102 * 219.60309 * 24 23 14 27 27 C 1.35211 * 113.71401 * 359.55711 * 7 6 5 28 28 S 1.70765 * 124.72276 * 269.97768 * 5 4 2 29 29 H 1.08995 * 109.46831 * 299.99684 * 1 2 3 30 30 H 1.08997 * 109.47124 * 59.99771 * 1 2 3 31 31 H 1.09003 * 109.47145 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47046 * 239.99564 * 2 1 3 33 33 H 1.08998 * 109.46954 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47280 * 300.00133 * 3 2 1 35 35 H 1.08995 * 109.46982 * 60.00409 * 3 2 1 36 36 H 1.09005 * 109.46712 * 304.99676 * 4 2 1 37 37 H 1.08996 * 109.47399 * 185.00235 * 4 2 1 38 38 H 0.97006 * 119.99818 * 0.02562 * 10 8 7 39 39 H 1.08997 * 110.36731 * 86.07837 * 13 11 10 40 40 H 1.08998 * 110.36861 * 323.75432 * 13 11 10 41 41 H 0.97002 * 120.00248 * 354.68907 * 18 17 15 42 42 H 1.08996 * 109.88664 * 118.13109 * 23 14 13 43 43 H 1.09002 * 109.88022 * 239.29296 * 23 14 13 44 44 H 0.96706 * 114.00213 * 293.78746 * 26 24 23 45 45 H 1.08000 * 125.58371 * 180.22443 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 -2.1734 1.1889 6 7 2.3533 -3.1075 0.6641 7 6 1.8248 -4.3334 0.7057 8 6 2.4979 -5.5197 0.1505 9 8 1.9658 -6.6110 0.2241 10 7 3.7033 -5.3962 -0.4394 11 6 4.3727 -6.5762 -0.9922 12 1 3.6516 -7.2525 -1.4513 13 6 5.2028 -7.3039 0.0945 14 7 6.2491 -8.0271 -0.6510 15 6 6.9143 -9.1415 -0.2144 16 1 6.7265 -9.5292 0.7759 17 6 7.8303 -9.7728 -1.0447 18 7 8.0078 -11.0741 -0.9597 19 14 8.8054 -8.7765 -2.2881 20 1 8.0006 -8.6033 -3.5241 21 1 9.1241 -7.4444 -1.7144 22 1 10.0664 -9.4896 -2.6143 23 6 6.4645 -7.3498 -1.9380 24 6 5.4752 -6.1670 -2.0044 25 1 5.9624 -5.2435 -1.6916 26 8 4.9296 -6.0288 -3.3179 27 6 0.6166 -4.3843 1.3106 28 16 0.1850 -2.8089 1.8143 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.6054 -0.2618 2.1370 37 1 3.1263 -0.6444 1.2952 38 1 4.1278 -4.5258 -0.4979 39 1 4.5756 -8.0053 0.6447 40 1 5.6527 -6.5814 0.7754 41 1 7.5567 -11.5809 -0.2664 42 1 7.4890 -6.9825 -1.9968 43 1 6.2687 -8.0409 -2.7579 44 1 5.5782 -5.7741 -3.9884 45 1 0.0217 -5.2745 1.4521 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078268927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:51 Heat of formation + Delta-G solvation = -19.039024 kcal Electronic energy + Delta-G solvation = -27066.153820 eV Core-core repulsion = 23211.171311 eV Total energy + Delta-G solvation = -3854.982509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -40.68396 -39.24309 -37.99818 -36.75277 -35.33189 -34.17993 -32.00125 -31.42613 -28.84275 -28.09657 -27.78839 -27.64253 -25.40824 -23.67088 -22.09233 -21.06001 -20.54270 -20.21349 -19.86137 -18.90149 -17.58736 -17.09547 -16.72001 -16.07085 -15.73656 -15.65820 -15.34325 -14.87214 -14.56927 -14.49645 -13.89329 -13.87653 -13.57726 -13.46263 -13.06177 -12.86987 -12.80610 -12.67221 -12.52635 -12.32410 -12.22068 -11.87810 -11.68553 -11.58602 -11.38147 -11.15225 -11.12096 -10.54544 -10.43522 -10.20597 -10.07048 -9.88273 -9.83393 -9.59450 -9.24613 -9.16095 -8.88272 -8.36221 -7.11331 -6.38992 -3.14521 0.26588 0.92639 1.32211 1.79969 3.18514 3.33736 3.37586 3.45959 3.63415 3.67689 4.29334 4.34913 4.39143 4.46785 4.58016 4.77580 4.85763 4.92653 5.02120 5.05452 5.15788 5.16590 5.19556 5.27755 5.33018 5.34896 5.40416 5.49270 5.50635 5.60697 5.72944 5.81268 5.85959 5.87081 5.88740 6.27771 6.39350 6.52956 6.61238 6.73967 7.14024 7.63581 7.65746 7.80884 8.25377 8.32549 9.02844 9.58284 10.22892 11.12421 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002575 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.098906 B =10872.463634 C =11716.984742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.039 4.039 5 C 0.031 3.969 6 N -0.441 5.441 7 C 0.017 3.983 8 C 0.593 3.407 9 O -0.530 6.530 10 N -0.696 5.696 11 C 0.140 3.860 12 H 0.108 0.892 13 C 0.133 3.867 14 N -0.603 5.603 15 C -0.339 4.339 16 H 0.081 0.919 17 C -0.018 4.018 18 N -0.909 5.909 19 Si 1.065 2.935 20 H -0.291 1.291 21 H -0.293 1.293 22 H -0.298 1.298 23 C 0.078 3.922 24 C 0.088 3.912 25 H 0.068 0.932 26 O -0.558 6.558 27 C -0.228 4.228 28 S 0.204 5.796 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.407 0.593 39 H 0.058 0.942 40 H 0.026 0.974 41 H 0.265 0.735 42 H 0.041 0.959 43 H 0.058 0.942 44 H 0.378 0.622 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.829 27.564 3.388 31.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.080 4.080 5 C -0.249 4.249 6 N -0.156 5.156 7 C -0.118 4.118 8 C 0.376 3.624 9 O -0.406 6.406 10 N -0.346 5.346 11 C 0.034 3.966 12 H 0.126 0.874 13 C 0.006 3.994 14 N -0.331 5.331 15 C -0.465 4.465 16 H 0.099 0.901 17 C -0.220 4.220 18 N -0.549 5.549 19 Si 0.898 3.102 20 H -0.219 1.219 21 H -0.221 1.221 22 H -0.226 1.226 23 C -0.048 4.048 24 C 0.028 3.972 25 H 0.086 0.914 26 O -0.363 6.363 27 C -0.370 4.370 28 S 0.462 5.538 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.242 0.758 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.225 0.775 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -15.922 26.896 2.838 31.384 hybrid contribution 0.182 -0.139 0.647 0.686 sum -15.740 26.757 3.484 31.238 Atomic orbital electron populations 1.22017 0.95005 1.02125 1.02328 1.21118 0.96135 0.96358 0.97629 1.21816 1.01347 0.95038 1.02122 1.20413 1.03199 0.84938 0.99435 1.27076 0.95537 1.00669 1.01655 1.66902 1.32521 0.98566 1.17626 1.20453 0.94253 0.92202 1.04911 1.17027 0.81014 0.86351 0.78047 1.90849 1.65545 1.26209 1.57992 1.45669 1.19114 1.11775 1.58081 1.22277 0.94057 0.86705 0.93536 0.87399 1.21834 0.90085 0.94526 0.92985 1.44567 1.42458 1.31377 1.14742 1.19964 1.22485 1.01478 1.02602 0.90102 1.25670 0.99214 0.96215 1.00876 1.70901 1.49285 1.03976 1.30763 0.83878 0.76547 0.74093 0.75655 1.21912 1.22139 1.22558 1.22463 0.96809 0.93497 0.91991 1.23009 0.93659 0.97465 0.83023 0.91412 1.86525 1.39278 1.92492 1.17957 1.26625 1.01056 1.04360 1.04926 1.82814 1.21170 0.97005 1.52832 0.92271 0.92088 0.92572 0.90317 0.92254 0.92243 0.92442 0.89448 0.88431 0.75766 0.92331 0.95616 0.92477 0.94170 0.92473 0.77503 0.79303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 8.89 37.16 0.33 -0.49 16 2 C -0.09 -0.53 2.91 -90.62 -0.26 -0.79 16 3 C -0.15 -0.65 9.19 37.16 0.34 -0.31 16 4 C -0.04 -0.24 5.27 -27.88 -0.15 -0.39 16 5 C 0.03 0.27 5.97 -13.61 -0.08 0.19 16 6 N -0.44 -5.30 10.12 -8.51 -0.09 -5.38 16 7 C 0.02 0.23 6.70 -84.52 -0.57 -0.34 16 8 C 0.59 10.01 7.80 -12.59 -0.10 9.91 16 9 O -0.53 -10.62 16.46 5.25 0.09 -10.53 16 10 N -0.70 -11.28 5.23 -52.85 -0.28 -11.55 16 11 C 0.14 2.66 3.04 -65.79 -0.20 2.46 16 12 H 0.11 2.31 7.73 -51.93 -0.40 1.91 16 13 C 0.13 2.92 6.93 -2.53 -0.02 2.90 16 14 N -0.60 -15.40 3.38 -170.07 -0.57 -15.97 16 15 C -0.34 -9.97 10.43 -15.06 -0.16 -10.13 16 16 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 17 C -0.02 -0.55 5.45 -17.43 -0.09 -0.65 16 18 N -0.91 -28.80 13.70 55.49 0.76 -28.04 16 19 Si 1.06 26.65 24.65 -169.99 -4.19 22.45 16 20 H -0.29 -6.83 6.36 56.52 0.36 -6.47 16 21 H -0.29 -6.88 6.35 56.52 0.36 -6.52 16 22 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 23 C 0.08 1.73 4.61 -3.06 -0.01 1.72 16 24 C 0.09 1.56 3.94 -24.89 -0.10 1.46 16 25 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 26 O -0.56 -8.97 13.40 -35.23 -0.47 -9.45 16 27 C -0.23 -2.55 10.62 29.65 0.31 -2.24 16 28 S 0.20 1.57 21.37 -107.50 -2.30 -0.73 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.34 6.13 -51.93 -0.32 0.03 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.41 5.74 8.03 -40.82 -0.33 5.41 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.26 8.31 8.73 -40.82 -0.36 7.96 16 42 H 0.04 0.90 4.45 -51.93 -0.23 0.67 16 43 H 0.06 1.36 6.60 -51.93 -0.34 1.02 16 44 H 0.38 4.29 9.12 45.56 0.42 4.70 16 45 H 0.19 1.98 8.03 -52.49 -0.42 1.56 16 LS Contribution 376.14 15.07 5.67 5.67 Total: -1.00 -35.82 376.14 -8.06 -43.88 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.93 Total: 6.34 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -0.75 Total: 3.31 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.18 Total: -60.94 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.39 Total: -19.98 kcal Atomic # 14 Polarization: 26.65 SS G_CDS: -4.19 Total: 22.45 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.30 Total: -0.73 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.82 -8.06 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078268927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.843 kcal (2) G-P(sol) polarization free energy of solvation -35.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds