Wall clock time and date at job start Tue Mar 31 2020 23:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 C 1.53004 * 109.47211 * 120.00327 * 2 1 3 5 5 C 1.50701 * 109.47345 * 64.99489 * 4 2 1 6 6 N 1.28646 * 124.71821 * 90.28492 * 5 4 2 7 7 C 1.33558 * 115.76762 * 180.15527 * 6 5 4 8 8 C 1.47267 * 123.14204 * 179.83224 * 7 6 5 9 9 O 1.21634 * 119.99955 * 179.73090 * 8 7 6 10 10 N 1.34773 * 120.00209 * 359.72333 * 8 7 6 11 11 C 1.46495 * 120.00228 * 180.02562 * 10 8 7 12 12 H 1.09005 * 110.88491 * 37.43462 * 11 10 8 13 13 C 1.54909 * 111.00687 * 273.55146 * 11 10 8 14 14 N 1.47428 * 104.83131 * 204.91337 * 13 11 10 15 15 C 1.36933 * 125.64624 * 204.09001 * 14 13 11 16 16 H 1.07997 * 120.00255 * 356.50750 * 15 14 13 17 17 C 1.38815 * 120.00201 * 176.51219 * 15 14 13 18 18 N 1.31610 * 120.00358 * 211.30819 * 17 15 14 19 19 Si 1.86802 * 119.99642 * 31.02779 * 17 15 14 20 20 H 1.48507 * 109.47290 * 275.58364 * 19 17 15 21 21 H 1.48497 * 109.47428 * 35.58074 * 19 17 15 22 22 H 1.48501 * 109.47294 * 155.58419 * 19 17 15 23 23 C 1.47022 * 108.70380 * 24.36045 * 14 13 11 24 24 C 1.54335 * 107.26290 * 358.58036 * 23 14 13 25 25 H 1.09002 * 110.51563 * 96.45809 * 24 23 14 26 26 O 1.42901 * 111.00102 * 219.60309 * 24 23 14 27 27 C 1.35211 * 113.71401 * 359.55711 * 7 6 5 28 28 S 1.70765 * 124.72276 * 269.97768 * 5 4 2 29 29 H 1.08995 * 109.46831 * 299.99684 * 1 2 3 30 30 H 1.08997 * 109.47124 * 59.99771 * 1 2 3 31 31 H 1.09003 * 109.47145 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47046 * 239.99564 * 2 1 3 33 33 H 1.08998 * 109.46954 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47280 * 300.00133 * 3 2 1 35 35 H 1.08995 * 109.46982 * 60.00409 * 3 2 1 36 36 H 1.09005 * 109.46712 * 304.99676 * 4 2 1 37 37 H 1.08996 * 109.47399 * 185.00235 * 4 2 1 38 38 H 0.97006 * 119.99818 * 0.02562 * 10 8 7 39 39 H 1.08997 * 110.36731 * 86.07837 * 13 11 10 40 40 H 1.08998 * 110.36861 * 323.75432 * 13 11 10 41 41 H 0.97002 * 120.00248 * 354.68907 * 18 17 15 42 42 H 1.08996 * 109.88664 * 118.13109 * 23 14 13 43 43 H 1.09002 * 109.88022 * 239.29296 * 23 14 13 44 44 H 0.96706 * 114.00213 * 293.78746 * 26 24 23 45 45 H 1.08000 * 125.58371 * 180.22443 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 -2.1734 1.1889 6 7 2.3533 -3.1075 0.6641 7 6 1.8248 -4.3334 0.7057 8 6 2.4979 -5.5197 0.1505 9 8 1.9658 -6.6110 0.2241 10 7 3.7033 -5.3962 -0.4394 11 6 4.3727 -6.5762 -0.9922 12 1 3.6516 -7.2525 -1.4513 13 6 5.2028 -7.3039 0.0945 14 7 6.2491 -8.0271 -0.6510 15 6 6.9143 -9.1415 -0.2144 16 1 6.7265 -9.5292 0.7759 17 6 7.8303 -9.7728 -1.0447 18 7 8.0078 -11.0741 -0.9597 19 14 8.8054 -8.7765 -2.2881 20 1 8.0006 -8.6033 -3.5241 21 1 9.1241 -7.4444 -1.7144 22 1 10.0664 -9.4896 -2.6143 23 6 6.4645 -7.3498 -1.9380 24 6 5.4752 -6.1670 -2.0044 25 1 5.9624 -5.2435 -1.6916 26 8 4.9296 -6.0288 -3.3179 27 6 0.6166 -4.3843 1.3106 28 16 0.1850 -2.8089 1.8143 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.6054 -0.2618 2.1370 37 1 3.1263 -0.6444 1.2952 38 1 4.1278 -4.5258 -0.4979 39 1 4.5756 -8.0053 0.6447 40 1 5.6527 -6.5814 0.7754 41 1 7.5567 -11.5809 -0.2664 42 1 7.4890 -6.9825 -1.9968 43 1 6.2687 -8.0409 -2.7579 44 1 5.5782 -5.7741 -3.9884 45 1 0.0217 -5.2745 1.4521 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078268927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:47 Heat of formation + Delta-G solvation = -48.900547 kcal Electronic energy + Delta-G solvation = -27067.448713 eV Core-core repulsion = 23211.171311 eV Total energy + Delta-G solvation = -3856.277401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -41.75027 -40.51167 -39.38858 -37.26848 -36.87734 -35.76323 -34.07342 -32.21588 -30.57487 -29.47328 -28.73179 -27.99391 -26.73974 -25.28170 -23.01191 -22.82381 -21.94294 -21.30060 -20.57576 -19.98244 -19.60606 -18.46937 -18.00837 -17.35406 -16.81285 -16.58144 -16.38001 -15.96519 -15.88107 -15.66880 -15.47840 -15.15053 -14.64336 -14.60050 -14.46853 -14.29367 -14.18117 -13.52300 -13.50862 -13.44511 -13.08851 -13.04193 -12.98604 -12.68202 -12.37619 -12.19603 -12.07387 -11.80243 -11.68975 -11.57152 -11.49676 -11.35359 -10.95814 -10.86034 -10.66708 -10.62287 -10.36453 -9.84190 -9.24085 -8.77542 -5.45498 -0.56395 0.20764 0.54395 0.82137 1.36786 1.49828 1.68046 1.92708 2.17876 2.50860 2.79950 2.89312 3.00234 3.26574 3.56733 3.66149 3.76374 3.89553 3.97142 4.01236 4.07055 4.15692 4.17905 4.33101 4.36683 4.54922 4.57615 4.69229 4.74746 4.80148 4.84737 4.89420 4.89770 4.96919 5.05721 5.11975 5.22453 5.34400 5.45502 5.48955 5.50826 6.00171 6.18135 6.52391 6.73996 6.78368 6.99052 7.37721 8.02511 8.75063 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002575 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.098906 B =10872.463634 C =11716.984742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.040 4.040 5 C 0.023 3.977 6 N -0.462 5.462 7 C -0.010 4.010 8 C 0.589 3.411 9 O -0.573 6.573 10 N -0.685 5.685 11 C 0.151 3.849 12 H 0.078 0.922 13 C 0.134 3.866 14 N -0.624 5.624 15 C -0.339 4.339 16 H 0.044 0.956 17 C -0.075 4.075 18 N -0.941 5.941 19 Si 1.109 2.891 20 H -0.264 1.264 21 H -0.263 1.263 22 H -0.303 1.303 23 C 0.070 3.930 24 C 0.111 3.889 25 H 0.109 0.891 26 O -0.563 6.563 27 C -0.244 4.244 28 S 0.297 5.703 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.420 0.580 39 H 0.028 0.972 40 H 0.042 0.958 41 H 0.248 0.752 42 H 0.055 0.945 43 H 0.040 0.960 44 H 0.402 0.598 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.472 32.370 2.868 36.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.110 4.110 3 C -0.200 4.200 4 C -0.080 4.080 5 C -0.256 4.256 6 N -0.178 5.178 7 C -0.145 4.145 8 C 0.374 3.626 9 O -0.453 6.453 10 N -0.335 5.335 11 C 0.044 3.956 12 H 0.097 0.903 13 C 0.007 3.993 14 N -0.353 5.353 15 C -0.467 4.467 16 H 0.062 0.938 17 C -0.270 4.270 18 N -0.583 5.583 19 Si 0.934 3.066 20 H -0.189 1.189 21 H -0.189 1.189 22 H -0.232 1.232 23 C -0.055 4.055 24 C 0.050 3.950 25 H 0.126 0.874 26 O -0.371 6.371 27 C -0.387 4.387 28 S 0.556 5.444 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.116 0.884 38 H 0.258 0.742 39 H 0.046 0.954 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.253 0.747 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -16.594 31.789 2.320 35.934 hybrid contribution 0.207 -1.594 0.935 1.859 sum -16.388 30.195 3.255 34.509 Atomic orbital electron populations 1.22041 0.94566 1.01680 1.03330 1.21077 0.96477 0.96869 0.96555 1.21792 1.01290 0.94130 1.02815 1.20606 1.03597 0.83109 1.00704 1.27649 0.96081 1.01444 1.00466 1.66870 1.33606 0.98232 1.19095 1.20034 0.95257 0.91948 1.07240 1.17562 0.80838 0.86993 0.77219 1.90817 1.66571 1.28237 1.59667 1.45469 1.18981 1.11316 1.57764 1.21811 0.93589 0.87260 0.92934 0.90342 1.21865 0.89364 0.94156 0.93887 1.44547 1.42820 1.31330 1.16572 1.19834 1.22574 1.02995 1.01274 0.93785 1.27206 1.00007 0.96263 1.03506 1.71039 1.50571 1.05275 1.31463 0.83366 0.74875 0.73739 0.74615 1.18948 1.18887 1.23155 1.22674 0.98884 0.94570 0.89331 1.22773 0.91497 0.97060 0.83623 0.87376 1.86495 1.40319 1.92487 1.17829 1.26899 1.00510 1.06932 1.04395 1.82483 1.18754 0.93110 1.50059 0.90576 0.91925 0.93612 0.92329 0.92368 0.92191 0.91130 0.86778 0.88357 0.74180 0.95364 0.94040 0.94223 0.92777 0.94188 0.74651 0.79401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.89 71.98 0.64 -0.55 16 2 C -0.09 -0.79 2.91 -10.79 -0.03 -0.82 16 3 C -0.14 -0.86 9.19 71.98 0.66 -0.20 16 4 C -0.04 -0.36 5.27 29.85 0.16 -0.20 16 5 C 0.02 0.36 5.97 88.58 0.53 0.89 16 6 N -0.46 -10.42 10.12 -180.84 -1.83 -12.25 16 7 C -0.01 -0.26 6.70 40.56 0.27 0.01 16 8 C 0.59 20.22 7.80 86.62 0.68 20.90 16 9 O -0.57 -24.10 16.46 -4.14 -0.07 -24.17 16 10 N -0.68 -21.82 5.23 -439.37 -2.30 -24.12 16 11 C 0.15 5.72 3.04 46.38 0.14 5.86 16 12 H 0.08 3.47 7.73 -2.38 -0.02 3.45 16 13 C 0.13 6.02 6.93 86.85 0.60 6.62 16 14 N -0.62 -32.23 3.38 -691.97 -2.34 -34.56 16 15 C -0.34 -20.72 10.43 84.03 0.88 -19.85 16 16 H 0.04 2.92 8.06 -2.91 -0.02 2.90 16 17 C -0.08 -4.60 5.45 84.86 0.46 -4.14 16 18 N -0.94 -61.88 13.70 21.65 0.30 -61.58 16 19 Si 1.11 52.95 24.65 68.60 1.69 54.64 16 20 H -0.26 -11.39 6.36 99.48 0.63 -10.76 16 21 H -0.26 -11.18 6.35 99.48 0.63 -10.55 16 22 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 23 C 0.07 2.99 4.61 86.73 0.40 3.39 16 24 C 0.11 3.61 3.94 31.79 0.13 3.73 16 25 H 0.11 2.76 8.00 -2.39 -0.02 2.74 16 26 O -0.56 -16.34 13.40 -148.98 -2.00 -18.34 16 27 C -0.24 -5.27 10.62 67.12 0.71 -4.55 16 28 S 0.30 3.72 21.37 -56.49 -1.21 2.51 16 29 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.04 0.43 6.13 -2.39 -0.01 0.42 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.07 0.25 8.14 -2.39 -0.02 0.24 16 36 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.42 11.11 8.03 -92.70 -0.74 10.37 16 39 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.25 16.54 8.73 -92.71 -0.81 15.73 16 42 H 0.05 2.19 4.45 -2.39 -0.01 2.18 16 43 H 0.04 1.84 6.60 -2.39 -0.02 1.83 16 44 H 0.40 7.41 9.12 -74.05 -0.68 6.73 16 45 H 0.19 3.95 8.03 -2.91 -0.02 3.93 16 Total: -1.00 -82.83 376.14 -2.10 -84.93 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -0.58 Total: 21.84 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 6.22 Total: 11.10 kcal Atomic # 7 Polarization: -126.34 SS G_CDS: -6.17 Total: -132.51 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -2.06 Total: -42.51 kcal Atomic # 14 Polarization: 52.95 SS G_CDS: 1.69 Total: 54.64 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.21 Total: 2.51 kcal Total: -82.83 -2.10 -84.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078268927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.030 kcal (2) G-P(sol) polarization free energy of solvation -82.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds