Wall clock time and date at job start Tue Mar 31 2020 23:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47432 * 2 1 4 4 C 1.50700 * 109.47224 * 179.97438 * 3 2 1 5 5 N 1.29434 * 124.80041 * 90.30407 * 4 3 2 6 6 C 1.30944 * 117.35948 * 180.23068 * 5 4 3 7 7 C 1.50703 * 122.90383 * 179.75309 * 6 5 4 8 8 C 1.35661 * 114.19393 * 359.47962 * 6 5 4 9 9 C 1.46683 * 126.13412 * 180.28738 * 8 6 5 10 10 O 1.21683 * 119.99688 * 0.02562 * 9 8 6 11 11 N 1.34776 * 120.00150 * 180.02562 * 9 8 6 12 12 C 1.46498 * 119.99795 * 180.02562 * 11 9 8 13 13 H 1.08994 * 110.89053 * 31.12072 * 12 11 9 14 14 C 1.54910 * 111.00535 * 267.19418 * 12 11 9 15 15 N 1.47427 * 104.83075 * 204.92012 * 14 12 11 16 16 C 1.36945 * 125.64458 * 204.08330 * 15 14 12 17 17 H 1.08001 * 120.00081 * 0.02840 * 16 15 14 18 18 C 1.38809 * 119.99614 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00169 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99655 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46920 * 60.00200 * 20 18 16 22 22 H 1.48500 * 109.46878 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47142 * 300.00314 * 20 18 16 24 24 C 1.47013 * 108.70691 * 24.12707 * 15 14 12 25 25 C 1.54328 * 107.27284 * 358.94271 * 24 15 14 26 26 H 1.08999 * 110.87681 * 219.37403 * 25 24 15 27 27 O 1.42898 * 110.72072 * 96.16419 * 25 24 15 28 28 S 1.70949 * 124.80533 * 270.00221 * 4 3 2 29 29 H 1.09005 * 109.46766 * 59.99982 * 1 2 3 30 30 H 1.09000 * 109.47157 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47169 * 300.00419 * 1 2 3 32 32 H 1.09001 * 109.47129 * 239.99982 * 2 1 3 33 33 H 1.09000 * 109.47473 * 120.00014 * 2 1 3 34 34 H 1.09001 * 109.46978 * 59.99890 * 3 2 1 35 35 H 1.09005 * 109.47160 * 299.99777 * 3 2 1 36 36 H 1.09002 * 109.47152 * 269.70672 * 7 6 5 37 37 H 1.09001 * 109.46980 * 149.70773 * 7 6 5 38 38 H 1.09004 * 109.47113 * 29.70753 * 7 6 5 39 39 H 0.96997 * 119.99635 * 0.02562 * 11 9 8 40 40 H 1.09000 * 110.36645 * 323.75681 * 14 12 11 41 41 H 1.08998 * 110.36903 * 86.08176 * 14 12 11 42 42 H 0.97004 * 119.99905 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.88459 * 239.52304 * 24 15 14 44 44 H 1.09000 * 110.01375 * 118.43045 * 24 15 14 45 45 H 0.96707 * 113.99888 * 66.48560 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.2862 1.4479 -1.0619 6 6 5.5845 1.4423 -0.8918 7 6 6.5606 1.4421 -2.0400 8 6 5.9751 1.4425 0.4074 9 6 7.3586 1.4430 0.8947 10 8 8.2825 1.4436 0.1028 11 7 7.6065 1.4427 2.2195 12 6 8.9883 1.4437 2.7061 13 1 9.6439 1.9708 2.0132 14 6 9.4898 -0.0004 2.9567 15 7 10.5579 0.1404 3.9631 16 6 11.5876 -0.7401 4.1625 17 1 11.6644 -1.6283 3.5528 18 6 12.5327 -0.4910 5.1482 19 7 12.4388 0.5911 5.8915 20 14 13.9370 -1.6924 5.4206 21 1 14.7385 -1.8074 4.1758 22 1 14.8018 -1.2012 6.5233 23 1 13.3865 -3.0241 5.7796 24 6 10.3339 1.3820 4.7178 25 6 9.0762 2.0554 4.1293 26 1 9.2030 3.1367 4.0771 27 8 7.9177 1.7204 4.8960 28 16 4.5222 1.4425 1.4047 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9564 -0.8900 36 1 6.7960 0.4144 -2.3167 37 1 7.4741 1.9560 -1.7404 38 1 6.1179 1.9559 -2.8934 39 1 6.8699 1.4418 2.8506 40 1 8.6819 -0.6205 3.3452 41 1 9.8890 -0.4283 2.0372 42 1 13.0991 0.7650 6.5806 43 1 11.1939 2.0427 4.6082 44 1 10.1737 1.1542 5.7717 45 1 7.9233 2.0790 5.7941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084055809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:54 Heat of formation + Delta-G solvation = -24.158669 kcal Electronic energy + Delta-G solvation = -26980.318302 eV Core-core repulsion = 23125.113789 eV Total energy + Delta-G solvation = -3855.204513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.48955 -39.38514 -37.85964 -35.64540 -34.87725 -34.06764 -32.01218 -31.66366 -29.09524 -28.46762 -28.06183 -26.80054 -24.49467 -23.62460 -22.05595 -21.68179 -20.55110 -20.11001 -19.48000 -18.10322 -17.44807 -16.87018 -16.60100 -15.60659 -15.50139 -15.35738 -14.97237 -14.66144 -14.39861 -14.08433 -13.99276 -13.84537 -13.55346 -13.19420 -12.84422 -12.66276 -12.65076 -12.54177 -12.46094 -12.23073 -11.99491 -11.62241 -11.46138 -11.32002 -11.17506 -10.99352 -10.84893 -10.54366 -10.52530 -10.17350 -10.08348 -9.83808 -9.73108 -9.65760 -9.35171 -8.95099 -8.72654 -8.65478 -6.89808 -5.76470 -3.09649 0.09126 0.99207 1.40983 2.31146 3.16884 3.22210 3.40227 3.43991 3.45539 3.70711 4.44874 4.46361 4.52532 4.55584 4.60560 4.84286 5.00740 5.05863 5.11459 5.24993 5.26296 5.34054 5.34422 5.51976 5.58851 5.63538 5.67537 5.68115 5.72386 5.80333 5.82922 5.85029 6.01568 6.16915 6.26468 6.52920 6.62081 6.87603 7.30241 7.41502 7.43734 7.65477 7.72393 8.03056 8.17644 8.28906 9.16084 9.76086 10.40303 11.35740 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.002445 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.864965 B =11450.196609 C =11850.888235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.046 4.046 4 C 0.060 3.940 5 N -0.476 5.476 6 C 0.146 3.854 7 C -0.089 4.089 8 C -0.293 4.293 9 C 0.592 3.408 10 O -0.525 6.525 11 N -0.701 5.701 12 C 0.139 3.861 13 H 0.109 0.891 14 C 0.131 3.869 15 N -0.600 5.600 16 C -0.225 4.225 17 H 0.079 0.921 18 C -0.009 4.009 19 N -0.927 5.927 20 Si 0.915 3.085 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.155 3.845 25 C 0.067 3.933 26 H 0.062 0.938 27 O -0.568 6.568 28 S 0.164 5.836 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.404 0.596 40 H 0.026 0.974 41 H 0.046 0.954 42 H 0.253 0.747 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.710 4.881 -8.929 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.087 4.087 4 C -0.216 4.216 5 N -0.191 5.191 6 C 0.009 3.991 7 C -0.148 4.148 8 C -0.417 4.417 9 C 0.377 3.623 10 O -0.403 6.403 11 N -0.352 5.352 12 C 0.033 3.967 13 H 0.127 0.873 14 C 0.004 3.996 15 N -0.327 5.327 16 C -0.353 4.353 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.575 5.575 20 Si 0.746 3.254 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.030 3.970 25 C 0.007 3.993 26 H 0.080 0.920 27 O -0.375 6.375 28 S 0.422 5.578 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.240 0.760 40 H 0.044 0.956 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -22.488 4.576 -9.259 24.746 hybrid contribution 1.147 -0.340 0.455 1.280 sum -21.341 4.236 -8.804 23.471 Atomic orbital electron populations 1.21757 0.94764 1.02219 1.02107 1.21551 0.96404 0.94776 1.03171 1.20412 0.84480 0.99152 1.04628 1.27383 1.01691 1.01118 0.91359 1.66083 1.04384 1.17327 1.31320 1.20672 0.89829 0.94933 0.93714 1.20670 0.96983 1.03797 0.93355 1.25538 0.98059 1.20916 0.97169 1.16702 0.85834 0.76888 0.82858 1.90790 1.44100 1.50560 1.54872 1.45675 1.09822 1.73935 1.05735 1.22434 0.81604 0.99272 0.93366 0.87338 1.21829 0.91671 0.92970 0.93121 1.44263 1.27125 1.23771 1.37519 1.19045 1.00602 1.01013 1.14650 0.90295 1.24796 0.99227 0.98077 0.98392 1.69900 1.36977 1.26471 1.24132 0.86140 0.81755 0.80117 0.77418 1.21060 1.21583 1.21147 1.21854 0.91732 0.87871 0.95580 1.23540 0.87701 0.97316 0.90733 0.92003 1.86242 1.42483 1.79569 1.29191 1.83961 0.96465 1.66207 1.11187 0.92392 0.92218 0.92414 0.91094 0.91449 0.89309 0.88460 0.90077 0.87996 0.90915 0.75981 0.95644 0.93621 0.93648 0.92574 0.92820 0.77183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 3 C -0.05 -0.31 5.79 -27.88 -0.16 -0.47 16 4 C 0.06 0.62 6.64 -13.29 -0.09 0.53 16 5 N -0.48 -6.00 10.50 -7.70 -0.08 -6.09 16 6 C 0.15 2.00 6.79 -83.89 -0.57 1.43 16 7 C -0.09 -1.11 9.70 36.01 0.35 -0.76 16 8 C -0.29 -4.11 6.48 -37.10 -0.24 -4.35 16 9 C 0.59 9.75 7.78 -12.85 -0.10 9.65 16 10 O -0.52 -9.92 13.91 5.20 0.07 -9.85 16 11 N -0.70 -11.32 5.16 -53.03 -0.27 -11.59 16 12 C 0.14 2.59 3.31 -65.78 -0.22 2.38 16 13 H 0.11 2.13 7.54 -51.93 -0.39 1.74 16 14 C 0.13 2.90 6.92 -2.53 -0.02 2.88 16 15 N -0.60 -15.42 3.39 -170.07 -0.58 -16.00 16 16 C -0.22 -6.32 10.28 -15.06 -0.15 -6.48 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 19 N -0.93 -26.70 10.31 55.49 0.57 -26.13 16 20 Si 0.92 22.16 29.55 -169.99 -5.02 17.13 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 C 0.16 3.61 5.14 -3.07 -0.02 3.59 16 25 C 0.07 1.20 4.20 -24.89 -0.10 1.10 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 O -0.57 -9.00 12.14 -35.23 -0.43 -9.43 16 28 S 0.16 1.74 22.31 -107.50 -2.40 -0.65 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.10 1.41 6.01 -51.93 -0.31 1.10 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.40 5.96 6.77 -40.82 -0.28 5.68 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.06 1.44 7.38 -51.93 -0.38 1.05 16 44 H 0.05 1.36 7.43 -51.93 -0.39 0.97 16 45 H 0.38 4.60 9.12 45.56 0.42 5.01 16 LS Contribution 381.03 15.07 5.74 5.74 Total: -1.00 -32.74 381.03 -9.55 -42.30 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.95 Total: 6.70 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -1.21 Total: 7.86 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.36 Total: -59.81 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.36 Total: -19.27 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.40 Total: -0.65 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.74 -9.55 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084055809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.140 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds