Wall clock time and date at job start Tue Mar 31 2020 23:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47432 * 2 1 4 4 C 1.50700 * 109.47224 * 179.97438 * 3 2 1 5 5 N 1.29434 * 124.80041 * 90.30407 * 4 3 2 6 6 C 1.30944 * 117.35948 * 180.23068 * 5 4 3 7 7 C 1.50703 * 122.90383 * 179.75309 * 6 5 4 8 8 C 1.35661 * 114.19393 * 359.47962 * 6 5 4 9 9 C 1.46683 * 126.13412 * 180.28738 * 8 6 5 10 10 O 1.21683 * 119.99688 * 0.02562 * 9 8 6 11 11 N 1.34776 * 120.00150 * 180.02562 * 9 8 6 12 12 C 1.46498 * 119.99795 * 180.02562 * 11 9 8 13 13 H 1.08994 * 110.89053 * 31.12072 * 12 11 9 14 14 C 1.54910 * 111.00535 * 267.19418 * 12 11 9 15 15 N 1.47427 * 104.83075 * 204.92012 * 14 12 11 16 16 C 1.36945 * 125.64458 * 204.08330 * 15 14 12 17 17 H 1.08001 * 120.00081 * 0.02840 * 16 15 14 18 18 C 1.38809 * 119.99614 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00169 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99655 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46920 * 60.00200 * 20 18 16 22 22 H 1.48500 * 109.46878 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47142 * 300.00314 * 20 18 16 24 24 C 1.47013 * 108.70691 * 24.12707 * 15 14 12 25 25 C 1.54328 * 107.27284 * 358.94271 * 24 15 14 26 26 H 1.08999 * 110.87681 * 219.37403 * 25 24 15 27 27 O 1.42898 * 110.72072 * 96.16419 * 25 24 15 28 28 S 1.70949 * 124.80533 * 270.00221 * 4 3 2 29 29 H 1.09005 * 109.46766 * 59.99982 * 1 2 3 30 30 H 1.09000 * 109.47157 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47169 * 300.00419 * 1 2 3 32 32 H 1.09001 * 109.47129 * 239.99982 * 2 1 3 33 33 H 1.09000 * 109.47473 * 120.00014 * 2 1 3 34 34 H 1.09001 * 109.46978 * 59.99890 * 3 2 1 35 35 H 1.09005 * 109.47160 * 299.99777 * 3 2 1 36 36 H 1.09002 * 109.47152 * 269.70672 * 7 6 5 37 37 H 1.09001 * 109.46980 * 149.70773 * 7 6 5 38 38 H 1.09004 * 109.47113 * 29.70753 * 7 6 5 39 39 H 0.96997 * 119.99635 * 0.02562 * 11 9 8 40 40 H 1.09000 * 110.36645 * 323.75681 * 14 12 11 41 41 H 1.08998 * 110.36903 * 86.08176 * 14 12 11 42 42 H 0.97004 * 119.99905 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.88459 * 239.52304 * 24 15 14 44 44 H 1.09000 * 110.01375 * 118.43045 * 24 15 14 45 45 H 0.96707 * 113.99888 * 66.48560 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.2862 1.4479 -1.0619 6 6 5.5845 1.4423 -0.8918 7 6 6.5606 1.4421 -2.0400 8 6 5.9751 1.4425 0.4074 9 6 7.3586 1.4430 0.8947 10 8 8.2825 1.4436 0.1028 11 7 7.6065 1.4427 2.2195 12 6 8.9883 1.4437 2.7061 13 1 9.6439 1.9708 2.0132 14 6 9.4898 -0.0004 2.9567 15 7 10.5579 0.1404 3.9631 16 6 11.5876 -0.7401 4.1625 17 1 11.6644 -1.6283 3.5528 18 6 12.5327 -0.4910 5.1482 19 7 12.4388 0.5911 5.8915 20 14 13.9370 -1.6924 5.4206 21 1 14.7385 -1.8074 4.1758 22 1 14.8018 -1.2012 6.5233 23 1 13.3865 -3.0241 5.7796 24 6 10.3339 1.3820 4.7178 25 6 9.0762 2.0554 4.1293 26 1 9.2030 3.1367 4.0771 27 8 7.9177 1.7204 4.8960 28 16 4.5222 1.4425 1.4047 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9564 -0.8900 36 1 6.7960 0.4144 -2.3167 37 1 7.4741 1.9560 -1.7404 38 1 6.1179 1.9559 -2.8934 39 1 6.8699 1.4418 2.8506 40 1 8.6819 -0.6205 3.3452 41 1 9.8890 -0.4283 2.0372 42 1 13.0991 0.7650 6.5806 43 1 11.1939 2.0427 4.6082 44 1 10.1737 1.1542 5.7717 45 1 7.9233 2.0790 5.7941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084055809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:53 Heat of formation + Delta-G solvation = -48.240432 kcal Electronic energy + Delta-G solvation = -26981.362566 eV Core-core repulsion = 23125.113789 eV Total energy + Delta-G solvation = -3856.248777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.57812 -40.66417 -39.34630 -36.48907 -36.23682 -35.56477 -33.68229 -32.77944 -30.65396 -29.57234 -29.10023 -28.36981 -26.38408 -24.35552 -23.35065 -22.29342 -22.23085 -21.68548 -20.66180 -19.20544 -19.08698 -18.21194 -17.96601 -16.91505 -16.73378 -16.60721 -16.01604 -15.92170 -15.78667 -15.49369 -15.13088 -14.82200 -14.70235 -14.56212 -14.38208 -14.23805 -13.98667 -13.58769 -13.31425 -13.20075 -12.99896 -12.85352 -12.74683 -12.57392 -12.41660 -12.30758 -12.17587 -12.10050 -11.97977 -11.88490 -11.64731 -11.23400 -10.91452 -10.77372 -10.76503 -10.62483 -10.21034 -9.77667 -8.96672 -7.89598 -5.25695 -0.86628 0.09539 0.48844 1.29645 1.45053 1.48214 1.54329 1.87817 2.00486 2.47832 2.90094 3.14125 3.29244 3.55611 3.69862 3.74568 3.83213 3.90943 4.02122 4.06841 4.10117 4.21697 4.44740 4.46097 4.61754 4.65773 4.67095 4.71694 4.79251 4.80212 4.86796 4.93947 4.94303 5.21820 5.24954 5.28802 5.34004 5.39139 5.45406 5.45815 5.63829 6.13056 6.34333 6.54672 6.83666 7.02474 7.05463 7.69093 8.32688 9.20092 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.002445 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.864965 B =11450.196609 C =11850.888235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.047 4.047 4 C 0.071 3.929 5 N -0.497 5.497 6 C 0.146 3.854 7 C -0.088 4.088 8 C -0.331 4.331 9 C 0.593 3.407 10 O -0.556 6.556 11 N -0.693 5.693 12 C 0.152 3.848 13 H 0.099 0.901 14 C 0.132 3.868 15 N -0.620 5.620 16 C -0.248 4.248 17 H 0.077 0.923 18 C -0.060 4.060 19 N -0.947 5.947 20 Si 0.980 3.020 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.161 3.839 25 C 0.091 3.909 26 H 0.094 0.906 27 O -0.566 6.566 28 S 0.209 5.791 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.413 0.587 40 H 0.024 0.976 41 H 0.031 0.969 42 H 0.250 0.750 43 H 0.027 0.973 44 H 0.028 0.972 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.226 5.207 -8.787 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.088 4.088 4 C -0.203 4.203 5 N -0.213 5.213 6 C 0.007 3.993 7 C -0.146 4.146 8 C -0.454 4.454 9 C 0.380 3.620 10 O -0.437 6.437 11 N -0.344 5.344 12 C 0.045 3.955 13 H 0.117 0.883 14 C 0.005 3.995 15 N -0.347 5.347 16 C -0.377 4.377 17 H 0.094 0.906 18 C -0.253 4.253 19 N -0.596 5.596 20 Si 0.808 3.192 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.036 3.964 25 C 0.031 3.969 26 H 0.111 0.889 27 O -0.375 6.375 28 S 0.468 5.532 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.251 0.749 40 H 0.042 0.958 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.047 0.953 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -25.058 4.908 -9.096 27.106 hybrid contribution 1.792 -0.474 0.395 1.895 sum -23.267 4.434 -8.701 25.233 Atomic orbital electron populations 1.21738 0.93345 1.02578 1.02887 1.21536 0.97573 0.94147 1.02461 1.20667 0.81897 0.99848 1.06366 1.28108 1.03141 0.98204 0.90888 1.66167 1.03903 1.18943 1.32238 1.20865 0.90561 0.94047 0.93844 1.20629 0.96353 1.03824 0.93830 1.25319 0.98069 1.23743 0.98305 1.17000 0.86715 0.75849 0.82424 1.90772 1.45542 1.51865 1.55525 1.45481 1.08814 1.74080 1.06004 1.22044 0.82844 0.96690 0.93909 0.88273 1.21862 0.90697 0.95279 0.91625 1.44537 1.27396 1.24176 1.38639 1.19366 1.01738 1.01661 1.14887 0.90551 1.25613 1.01564 0.99879 0.98272 1.70098 1.37468 1.27720 1.24293 0.85134 0.78684 0.78164 0.77218 1.20491 1.21524 1.20412 1.21708 0.93390 0.86878 0.94464 1.23174 0.85833 0.98178 0.89735 0.88883 1.86205 1.40744 1.79950 1.30569 1.83729 0.94124 1.65331 1.09975 0.91940 0.92132 0.91319 0.92510 0.91547 0.86717 0.87560 0.89954 0.89683 0.89300 0.74927 0.95842 0.95038 0.94068 0.95533 0.95342 0.74915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 71.98 0.71 -0.30 16 2 C -0.12 -1.21 5.92 30.59 0.18 -1.03 16 3 C -0.05 -0.50 5.79 29.85 0.17 -0.32 16 4 C 0.07 1.30 6.64 88.46 0.59 1.89 16 5 N -0.50 -11.77 10.50 -178.28 -1.87 -13.64 16 6 C 0.15 3.88 6.79 42.09 0.29 4.16 16 7 C -0.09 -2.18 9.70 71.24 0.69 -1.49 16 8 C -0.33 -9.01 6.48 23.88 0.15 -8.85 16 9 C 0.59 19.45 7.78 86.45 0.67 20.13 16 10 O -0.56 -21.51 13.91 -4.29 -0.06 -21.57 16 11 N -0.69 -21.79 5.16 -439.92 -2.27 -24.07 16 12 C 0.15 5.64 3.31 46.39 0.15 5.79 16 13 H 0.10 3.93 7.54 -2.39 -0.02 3.91 16 14 C 0.13 5.94 6.92 86.85 0.60 6.54 16 15 N -0.62 -32.68 3.39 -691.99 -2.35 -35.03 16 16 C -0.25 -14.25 10.28 84.03 0.86 -13.39 16 17 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 18 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 19 N -0.95 -55.70 10.31 21.65 0.22 -55.47 16 20 Si 0.98 46.02 29.55 68.60 2.03 48.05 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 C 0.16 7.63 5.14 86.73 0.45 8.07 16 25 C 0.09 3.17 4.20 31.79 0.13 3.30 16 26 H 0.09 2.74 8.14 -2.39 -0.02 2.73 16 27 O -0.57 -16.71 12.14 -148.98 -1.81 -18.52 16 28 S 0.21 3.98 22.31 -56.49 -1.26 2.72 16 29 H 0.06 0.38 8.14 -2.38 -0.02 0.37 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.08 2.43 6.01 -2.39 -0.01 2.41 16 38 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.41 11.45 6.77 -92.71 -0.63 10.82 16 40 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 43 H 0.03 1.40 7.38 -2.39 -0.02 1.38 16 44 H 0.03 1.47 7.43 -2.39 -0.02 1.46 16 45 H 0.40 8.67 9.12 -74.05 -0.68 7.99 16 Total: -1.00 -72.30 381.03 -1.53 -73.82 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -0.28 Total: 22.16 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: 6.12 Total: 21.55 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -6.27 Total: -128.21 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -1.87 Total: -40.09 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.26 Total: 2.72 kcal Total: -72.30 -1.53 -73.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084055809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.585 kcal (2) G-P(sol) polarization free energy of solvation -72.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds