Wall clock time and date at job start Tue Mar 31 2020 23:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47605 * 2 1 4 4 C 1.53005 * 109.46823 * 240.00370 * 2 1 3 5 5 C 1.50694 * 109.47386 * 120.00458 * 2 1 3 6 6 N 1.29432 * 124.80506 * 59.97018 * 5 2 1 7 7 C 1.30940 * 117.36485 * 179.77396 * 6 5 2 8 8 C 1.35660 * 114.19508 * 0.45284 * 7 6 5 9 9 C 1.46678 * 126.13609 * 179.85599 * 8 7 6 10 10 O 1.21688 * 120.00354 * 179.69162 * 9 8 7 11 11 N 1.34779 * 119.99821 * 359.41080 * 9 8 7 12 12 C 1.46501 * 119.99964 * 180.27946 * 11 9 8 13 13 H 1.08997 * 110.88808 * 34.29910 * 12 11 9 14 14 C 1.54908 * 111.00148 * 270.41493 * 12 11 9 15 15 N 1.47463 * 104.80882 * 204.95060 * 14 12 11 16 16 C 1.36946 * 125.62783 * 204.07100 * 15 14 12 17 17 H 1.07996 * 119.99678 * 354.79298 * 16 15 14 18 18 C 1.38808 * 119.99855 * 174.78835 * 16 15 14 19 19 N 1.31613 * 120.00182 * 7.06154 * 18 16 15 20 20 Si 1.86806 * 119.99977 * 187.05359 * 18 16 15 21 21 H 1.48497 * 109.47028 * 94.98834 * 20 18 16 22 22 H 1.48493 * 109.47316 * 214.99106 * 20 18 16 23 23 H 1.48504 * 109.46799 * 334.99392 * 20 18 16 24 24 C 1.47021 * 108.72814 * 24.07125 * 15 14 12 25 25 C 1.54327 * 107.26467 * 358.97610 * 24 15 14 26 26 H 1.08999 * 110.71611 * 219.43688 * 25 24 15 27 27 O 1.42898 * 110.87246 * 96.24370 * 25 24 15 28 28 S 1.70953 * 124.80575 * 239.99951 * 5 2 1 29 29 H 1.09007 * 109.46800 * 299.99915 * 1 2 3 30 30 H 1.09004 * 109.47302 * 59.99081 * 1 2 3 31 31 H 1.08998 * 109.47556 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47397 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47540 * 300.00773 * 3 2 1 34 34 H 1.09007 * 109.46972 * 60.00191 * 3 2 1 35 35 H 1.08998 * 109.46898 * 300.00212 * 4 2 1 36 36 H 1.08996 * 109.47497 * 59.99947 * 4 2 1 37 37 H 1.08997 * 109.46961 * 180.02562 * 4 2 1 38 38 H 1.08001 * 122.90285 * 180.30569 * 7 6 5 39 39 H 0.97002 * 119.99773 * 0.27160 * 11 9 8 40 40 H 1.08994 * 110.36865 * 323.75702 * 14 12 11 41 41 H 1.09001 * 110.36758 * 86.08008 * 14 12 11 42 42 H 0.97005 * 120.00118 * 179.97438 * 19 18 16 43 43 H 1.08991 * 109.88592 * 239.55896 * 24 15 14 44 44 H 1.09004 * 110.00928 * 118.46059 * 24 15 14 45 45 H 0.96705 * 114.00603 * 66.38509 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0323 -0.7105 1.2303 6 7 1.7772 -1.9442 1.5269 7 6 2.2938 -2.4164 2.6336 8 6 3.0325 -1.5169 3.3304 9 6 3.7236 -1.7638 4.6004 10 8 4.3629 -0.8732 5.1284 11 7 3.6459 -2.9755 5.1854 12 6 4.3311 -3.2203 6.4570 13 1 4.3270 -2.3254 7.0792 14 6 5.7761 -3.7258 6.2206 15 7 6.1135 -4.4858 7.4384 16 6 7.3787 -4.7233 7.9056 17 1 8.2355 -4.4137 7.3256 18 6 7.5599 -5.3619 9.1247 19 7 6.5251 -5.8627 9.7655 20 14 9.2725 -5.5108 9.8558 21 1 9.5030 -4.3949 10.8079 22 1 9.3941 -6.8058 10.5721 23 1 10.2819 -5.4499 8.7682 24 6 4.8673 -4.9462 8.0680 25 6 3.6985 -4.4221 7.2072 26 1 2.8730 -4.0919 7.8378 27 8 3.2588 -5.4200 6.2837 28 16 3.0193 -0.0008 2.4323 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.6765 -1.7488 -1.2494 36 1 1.6766 -0.2074 -2.1393 37 1 3.1299 -0.7216 -1.2491 38 1 2.1428 -3.4334 2.9643 39 1 3.1361 -3.6854 4.7646 40 1 5.8125 -4.3754 5.3462 41 1 6.4572 -2.8838 6.0972 42 1 6.6517 -6.3093 10.6173 43 1 4.7923 -4.5452 9.0786 44 1 4.8454 -6.0356 8.0990 45 1 2.8556 -6.1930 6.7021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084094927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:03 Heat of formation + Delta-G solvation = -19.331268 kcal Electronic energy + Delta-G solvation = -26986.599874 eV Core-core repulsion = 23131.604692 eV Total energy + Delta-G solvation = -3854.995181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.38929 -39.46271 -37.90475 -36.94462 -34.87741 -34.04441 -31.84979 -30.39642 -28.39820 -27.86609 -27.65975 -27.06288 -26.01624 -24.43997 -22.27389 -21.21717 -20.53049 -20.07490 -19.26623 -17.97742 -17.49846 -16.96446 -16.73251 -15.42180 -15.40021 -15.13215 -14.82978 -14.72058 -14.64667 -14.22581 -14.03877 -13.81612 -13.74943 -13.19429 -12.76592 -12.70697 -12.67241 -12.57042 -12.25689 -12.09493 -11.99153 -11.60670 -11.45090 -11.38425 -11.33496 -10.97972 -10.87628 -10.56002 -10.51816 -10.30099 -10.09198 -9.85240 -9.63562 -9.59121 -9.35279 -9.13470 -8.74959 -8.64528 -6.89387 -5.77912 -3.09693 0.10782 0.98529 1.53255 2.33770 3.21986 3.32008 3.39895 3.45286 3.46939 3.63830 4.31012 4.45062 4.45793 4.50953 4.57833 4.85173 4.90354 5.09693 5.13747 5.20350 5.24952 5.33927 5.34616 5.43711 5.47582 5.49229 5.50568 5.64571 5.68126 5.77632 5.84111 5.88257 5.94717 6.02585 6.17526 6.51598 6.63645 6.88091 7.29976 7.41695 7.42028 7.64966 7.73294 8.02691 8.17522 8.30364 9.15799 9.76003 10.40586 11.34807 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.002279 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.339361 B =12285.431998 C =12758.227407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.009 3.991 3 C -0.158 4.158 4 C -0.135 4.135 5 C 0.046 3.954 6 N -0.474 5.474 7 C 0.091 3.909 8 C -0.293 4.293 9 C 0.589 3.411 10 O -0.538 6.538 11 N -0.694 5.694 12 C 0.140 3.860 13 H 0.106 0.894 14 C 0.131 3.869 15 N -0.600 5.600 16 C -0.225 4.225 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.925 5.925 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.154 3.846 25 C 0.068 3.932 26 H 0.062 0.938 27 O -0.568 6.568 28 S 0.228 5.772 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.181 0.819 39 H 0.407 0.593 40 H 0.026 0.974 41 H 0.046 0.954 42 H 0.253 0.747 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.909 10.796 -19.267 26.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.005 3.995 3 C -0.216 4.216 4 C -0.193 4.193 5 C -0.228 4.228 6 N -0.188 5.188 7 C -0.067 4.067 8 C -0.417 4.417 9 C 0.373 3.627 10 O -0.416 6.416 11 N -0.345 5.345 12 C 0.035 3.965 13 H 0.124 0.876 14 C 0.004 3.996 15 N -0.327 5.327 16 C -0.353 4.353 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.572 5.572 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.028 3.972 25 C 0.009 3.991 26 H 0.080 0.920 27 O -0.375 6.375 28 S 0.488 5.512 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.198 0.802 39 H 0.243 0.757 40 H 0.044 0.956 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -13.972 12.477 -19.322 26.912 hybrid contribution 0.329 -1.988 1.125 2.308 sum -13.643 10.489 -18.197 25.046 Atomic orbital electron populations 1.21845 0.92034 1.03218 1.02192 1.19279 0.96773 0.93999 0.89417 1.22067 1.01925 0.94171 1.03415 1.21849 1.01310 1.01117 0.95068 1.27583 1.00019 0.93921 1.01308 1.66010 1.23636 1.11753 1.17394 1.22193 0.94112 1.00862 0.89521 1.25904 1.11880 0.99601 1.04352 1.16747 0.80208 0.83192 0.82546 1.90856 1.42412 1.43896 1.64429 1.45532 1.52585 1.12296 1.24070 1.22426 0.93539 0.97052 0.83526 0.87568 1.21848 0.92264 0.94559 0.90936 1.44288 1.02418 1.61164 1.24838 1.19095 0.82384 1.32672 1.01174 0.90230 1.24811 0.97741 1.00535 0.97327 1.69921 1.28206 1.42296 1.16808 0.86069 0.83340 0.77084 0.79127 1.21530 1.21766 1.20580 1.21871 0.82429 0.98686 0.94195 1.23514 0.97020 0.88093 0.90520 0.91992 1.86236 1.81941 1.32411 1.36873 1.84043 1.43697 1.11258 1.12224 0.92419 0.91504 0.91312 0.91623 0.90439 0.91652 0.91302 0.91492 0.92370 0.80180 0.75661 0.95608 0.93566 0.93694 0.92416 0.92996 0.77144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 8.45 37.16 0.31 -0.56 16 2 C 0.01 0.07 0.99 -155.66 -0.15 -0.09 16 3 C -0.16 -0.90 7.53 37.16 0.28 -0.62 16 4 C -0.13 -0.90 8.45 37.16 0.31 -0.59 16 5 C 0.05 0.47 5.78 -13.29 -0.08 0.40 16 6 N -0.47 -5.52 10.49 -11.50 -0.12 -5.64 16 7 C 0.09 1.08 10.93 -18.85 -0.21 0.88 16 8 C -0.29 -3.95 6.48 -37.10 -0.24 -4.19 16 9 C 0.59 9.67 7.79 -12.85 -0.10 9.57 16 10 O -0.54 -10.66 16.66 5.20 0.09 -10.58 16 11 N -0.69 -10.90 5.16 -53.03 -0.27 -11.17 16 12 C 0.14 2.61 3.25 -65.78 -0.21 2.40 16 13 H 0.11 2.10 7.63 -51.93 -0.40 1.70 16 14 C 0.13 2.90 6.92 -2.51 -0.02 2.89 16 15 N -0.60 -15.46 3.40 -170.05 -0.58 -16.04 16 16 C -0.23 -6.35 10.26 -15.06 -0.15 -6.51 16 17 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 18 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 19 N -0.92 -26.71 10.36 55.49 0.57 -26.13 16 20 Si 0.91 22.22 29.56 -169.99 -5.02 17.20 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.15 3.57 5.15 -3.06 -0.02 3.56 16 25 C 0.07 1.21 4.19 -24.90 -0.10 1.11 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 O -0.57 -8.82 12.14 -35.23 -0.43 -9.24 16 28 S 0.23 2.57 21.39 -107.50 -2.30 0.27 16 29 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.38 7.92 -51.93 -0.41 -0.03 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.37 7.92 -51.92 -0.41 -0.04 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.18 1.77 7.15 -52.49 -0.38 1.39 16 39 H 0.41 5.57 6.27 -40.82 -0.26 5.32 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.06 1.48 7.30 -51.93 -0.38 1.10 16 44 H 0.05 1.31 7.54 -51.93 -0.39 0.92 16 45 H 0.38 4.53 9.12 45.56 0.42 4.94 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -33.48 380.55 -8.78 -42.26 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.98 Total: 5.43 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -0.47 Total: 7.91 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.40 Total: -58.99 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.34 Total: -19.82 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.30 Total: 0.27 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.48 -8.78 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084094927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.929 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds