Wall clock time and date at job start Tue Mar 31 2020 23:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47605 * 2 1 4 4 C 1.53005 * 109.46823 * 240.00370 * 2 1 3 5 5 C 1.50694 * 109.47386 * 120.00458 * 2 1 3 6 6 N 1.29432 * 124.80506 * 59.97018 * 5 2 1 7 7 C 1.30940 * 117.36485 * 179.77396 * 6 5 2 8 8 C 1.35660 * 114.19508 * 0.45284 * 7 6 5 9 9 C 1.46678 * 126.13609 * 179.85599 * 8 7 6 10 10 O 1.21688 * 120.00354 * 179.69162 * 9 8 7 11 11 N 1.34779 * 119.99821 * 359.41080 * 9 8 7 12 12 C 1.46501 * 119.99964 * 180.27946 * 11 9 8 13 13 H 1.08997 * 110.88808 * 34.29910 * 12 11 9 14 14 C 1.54908 * 111.00148 * 270.41493 * 12 11 9 15 15 N 1.47463 * 104.80882 * 204.95060 * 14 12 11 16 16 C 1.36946 * 125.62783 * 204.07100 * 15 14 12 17 17 H 1.07996 * 119.99678 * 354.79298 * 16 15 14 18 18 C 1.38808 * 119.99855 * 174.78835 * 16 15 14 19 19 N 1.31613 * 120.00182 * 7.06154 * 18 16 15 20 20 Si 1.86806 * 119.99977 * 187.05359 * 18 16 15 21 21 H 1.48497 * 109.47028 * 94.98834 * 20 18 16 22 22 H 1.48493 * 109.47316 * 214.99106 * 20 18 16 23 23 H 1.48504 * 109.46799 * 334.99392 * 20 18 16 24 24 C 1.47021 * 108.72814 * 24.07125 * 15 14 12 25 25 C 1.54327 * 107.26467 * 358.97610 * 24 15 14 26 26 H 1.08999 * 110.71611 * 219.43688 * 25 24 15 27 27 O 1.42898 * 110.87246 * 96.24370 * 25 24 15 28 28 S 1.70953 * 124.80575 * 239.99951 * 5 2 1 29 29 H 1.09007 * 109.46800 * 299.99915 * 1 2 3 30 30 H 1.09004 * 109.47302 * 59.99081 * 1 2 3 31 31 H 1.08998 * 109.47556 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47397 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47540 * 300.00773 * 3 2 1 34 34 H 1.09007 * 109.46972 * 60.00191 * 3 2 1 35 35 H 1.08998 * 109.46898 * 300.00212 * 4 2 1 36 36 H 1.08996 * 109.47497 * 59.99947 * 4 2 1 37 37 H 1.08997 * 109.46961 * 180.02562 * 4 2 1 38 38 H 1.08001 * 122.90285 * 180.30569 * 7 6 5 39 39 H 0.97002 * 119.99773 * 0.27160 * 11 9 8 40 40 H 1.08994 * 110.36865 * 323.75702 * 14 12 11 41 41 H 1.09001 * 110.36758 * 86.08008 * 14 12 11 42 42 H 0.97005 * 120.00118 * 179.97438 * 19 18 16 43 43 H 1.08991 * 109.88592 * 239.55896 * 24 15 14 44 44 H 1.09004 * 110.00928 * 118.46059 * 24 15 14 45 45 H 0.96705 * 114.00603 * 66.38509 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0323 -0.7105 1.2303 6 7 1.7772 -1.9442 1.5269 7 6 2.2938 -2.4164 2.6336 8 6 3.0325 -1.5169 3.3304 9 6 3.7236 -1.7638 4.6004 10 8 4.3629 -0.8732 5.1284 11 7 3.6459 -2.9755 5.1854 12 6 4.3311 -3.2203 6.4570 13 1 4.3270 -2.3254 7.0792 14 6 5.7761 -3.7258 6.2206 15 7 6.1135 -4.4858 7.4384 16 6 7.3787 -4.7233 7.9056 17 1 8.2355 -4.4137 7.3256 18 6 7.5599 -5.3619 9.1247 19 7 6.5251 -5.8627 9.7655 20 14 9.2725 -5.5108 9.8558 21 1 9.5030 -4.3949 10.8079 22 1 9.3941 -6.8058 10.5721 23 1 10.2819 -5.4499 8.7682 24 6 4.8673 -4.9462 8.0680 25 6 3.6985 -4.4221 7.2072 26 1 2.8730 -4.0919 7.8378 27 8 3.2588 -5.4200 6.2837 28 16 3.0193 -0.0008 2.4323 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.6765 -1.7488 -1.2494 36 1 1.6766 -0.2074 -2.1393 37 1 3.1299 -0.7216 -1.2491 38 1 2.1428 -3.4334 2.9643 39 1 3.1361 -3.6854 4.7646 40 1 5.8125 -4.3754 5.3462 41 1 6.4572 -2.8838 6.0972 42 1 6.6517 -6.3093 10.6173 43 1 4.7923 -4.5452 9.0786 44 1 4.8454 -6.0356 8.0990 45 1 2.8556 -6.1930 6.7021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084094927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:02 Heat of formation + Delta-G solvation = -44.525775 kcal Electronic energy + Delta-G solvation = -26987.692390 eV Core-core repulsion = 23131.604692 eV Total energy + Delta-G solvation = -3856.087697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.45356 -40.67486 -39.40113 -37.61773 -36.48357 -35.54528 -33.71299 -31.61232 -30.09220 -28.70938 -28.33079 -28.16254 -27.05646 -26.27957 -23.42737 -22.37145 -22.12978 -21.49770 -20.39728 -19.18424 -18.86345 -18.22519 -18.14406 -16.93992 -16.66499 -16.43753 -16.05505 -15.81340 -15.58965 -15.46763 -15.43918 -14.81779 -14.62068 -14.58471 -14.47308 -14.30360 -13.98416 -13.22151 -13.19757 -13.07617 -12.85471 -12.79716 -12.66131 -12.59642 -12.40399 -12.31655 -12.12279 -12.01106 -11.98407 -11.92033 -11.90657 -11.48980 -10.89277 -10.76595 -10.61434 -10.56347 -10.23929 -9.95455 -8.96984 -7.91923 -5.26528 -0.83464 0.07679 0.64002 1.34341 1.44242 1.46445 1.54990 2.00518 2.06981 2.47203 2.89139 3.13901 3.27880 3.54844 3.66709 3.71727 3.82806 3.91073 3.94054 3.99205 4.12548 4.22686 4.29909 4.45684 4.62603 4.70412 4.75336 4.79456 4.86965 4.87015 4.95241 4.97998 4.98542 5.06284 5.25231 5.30934 5.37871 5.38245 5.39888 5.45321 5.63172 6.12419 6.38482 6.53068 6.84427 7.04403 7.05597 7.68245 8.32208 9.18526 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.002279 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.339361 B =12285.431998 C =12758.227407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.005 3.995 3 C -0.159 4.159 4 C -0.132 4.132 5 C 0.065 3.935 6 N -0.492 5.492 7 C 0.110 3.890 8 C -0.329 4.329 9 C 0.592 3.408 10 O -0.579 6.579 11 N -0.682 5.682 12 C 0.153 3.847 13 H 0.095 0.905 14 C 0.132 3.868 15 N -0.621 5.621 16 C -0.248 4.248 17 H 0.076 0.924 18 C -0.059 4.059 19 N -0.945 5.945 20 Si 0.978 3.022 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.272 1.272 24 C 0.159 3.841 25 C 0.094 3.906 26 H 0.094 0.906 27 O -0.564 6.564 28 S 0.231 5.769 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.200 0.800 39 H 0.419 0.581 40 H 0.025 0.975 41 H 0.029 0.971 42 H 0.250 0.750 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.335 11.357 -21.269 29.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.001 3.999 3 C -0.216 4.216 4 C -0.191 4.191 5 C -0.210 4.210 6 N -0.205 5.205 7 C -0.049 4.049 8 C -0.453 4.453 9 C 0.379 3.621 10 O -0.460 6.460 11 N -0.334 5.334 12 C 0.046 3.954 13 H 0.113 0.887 14 C 0.005 3.995 15 N -0.348 5.348 16 C -0.377 4.377 17 H 0.094 0.906 18 C -0.252 4.252 19 N -0.594 5.594 20 Si 0.806 3.194 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.196 1.196 24 C 0.033 3.967 25 C 0.034 3.966 26 H 0.112 0.888 27 O -0.373 6.373 28 S 0.492 5.508 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.216 0.784 39 H 0.258 0.742 40 H 0.043 0.957 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -15.432 13.024 -21.358 29.393 hybrid contribution 0.725 -2.155 1.602 2.781 sum -14.707 10.869 -19.756 26.921 Atomic orbital electron populations 1.21844 0.91060 1.02803 1.03305 1.19554 0.97459 0.94726 0.88183 1.22110 1.01826 0.93102 1.04608 1.21853 1.00994 1.00662 0.95613 1.28291 0.97895 0.93482 1.01286 1.66131 1.24477 1.12422 1.17502 1.22511 0.92286 1.01288 0.88853 1.25610 1.14126 1.01439 1.04135 1.17060 0.79447 0.82540 0.83058 1.90830 1.44340 1.45098 1.65762 1.45314 1.52219 1.12747 1.23101 1.22018 0.91706 0.96891 0.84769 0.88674 1.21875 0.94379 0.93560 0.89665 1.44560 1.02573 1.61738 1.25925 1.19391 0.83648 1.32875 1.01756 0.90634 1.25616 1.01488 1.00449 0.97653 1.70108 1.29864 1.42630 1.16773 0.85066 0.79245 0.76796 0.78257 1.21305 1.21595 1.19639 1.21736 0.83791 0.97080 0.94044 1.23128 0.95699 0.87811 0.90005 0.88803 1.86199 1.81825 1.32966 1.36334 1.84030 1.43991 1.10542 1.12258 0.92671 0.89089 0.92473 0.91870 0.88086 0.91683 0.92494 0.89042 0.92880 0.78371 0.74210 0.95742 0.95242 0.94033 0.95388 0.95524 0.74887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 8.45 71.98 0.61 -0.76 16 2 C 0.00 0.06 0.99 -52.93 -0.05 0.01 16 3 C -0.16 -1.39 7.53 71.98 0.54 -0.85 16 4 C -0.13 -1.45 8.45 71.98 0.61 -0.84 16 5 C 0.06 1.21 5.78 88.46 0.51 1.72 16 6 N -0.49 -10.62 10.49 -190.31 -2.00 -12.62 16 7 C 0.11 2.43 10.93 84.23 0.92 3.35 16 8 C -0.33 -8.64 6.48 23.88 0.15 -8.48 16 9 C 0.59 19.36 7.79 86.45 0.67 20.04 16 10 O -0.58 -23.42 16.66 -4.31 -0.07 -23.49 16 11 N -0.68 -20.88 5.16 -439.92 -2.27 -23.15 16 12 C 0.15 5.68 3.25 46.38 0.15 5.83 16 13 H 0.10 3.80 7.63 -2.39 -0.02 3.78 16 14 C 0.13 5.97 6.92 86.85 0.60 6.57 16 15 N -0.62 -32.86 3.40 -691.90 -2.35 -35.21 16 16 C -0.25 -14.35 10.26 84.03 0.86 -13.49 16 17 H 0.08 4.29 7.84 -2.91 -0.02 4.27 16 18 C -0.06 -3.35 5.48 84.86 0.46 -2.89 16 19 N -0.95 -55.80 10.36 21.65 0.22 -55.57 16 20 Si 0.98 46.27 29.56 68.60 2.03 48.30 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 C 0.16 7.53 5.15 86.73 0.45 7.98 16 25 C 0.09 3.23 4.19 31.78 0.13 3.37 16 26 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 27 O -0.56 -16.32 12.14 -148.98 -1.81 -18.12 16 28 S 0.23 5.03 21.39 -56.49 -1.21 3.82 16 29 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.60 7.92 -2.39 -0.02 0.58 16 33 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.06 0.59 7.92 -2.38 -0.02 0.57 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.20 3.44 7.15 -2.91 -0.02 3.42 16 39 H 0.42 10.72 6.27 -92.71 -0.58 10.14 16 40 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 43 H 0.03 1.48 7.30 -2.39 -0.02 1.46 16 44 H 0.03 1.38 7.54 -2.38 -0.02 1.36 16 45 H 0.40 8.52 9.12 -74.05 -0.68 7.85 16 Total: -1.00 -74.25 380.55 -1.06 -75.32 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -0.24 Total: 19.17 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: 6.63 Total: 21.56 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -6.39 Total: -126.55 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -1.88 Total: -41.61 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -1.21 Total: 3.82 kcal Total: -74.25 -1.06 -75.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084094927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.789 kcal (2) G-P(sol) polarization free energy of solvation -74.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds