Wall clock time and date at job start Tue Mar 31 2020 23:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47186 * 2 1 4 4 C 1.53002 * 109.47438 * 120.00486 * 2 1 3 5 5 C 1.50706 * 109.46925 * 64.99636 * 4 2 1 6 6 N 1.28647 * 124.71619 * 89.72870 * 5 4 2 7 7 C 1.33567 * 115.76039 * 179.78222 * 6 5 4 8 8 C 1.47269 * 123.13949 * 180.23001 * 7 6 5 9 9 O 1.21630 * 119.99862 * 180.25947 * 8 7 6 10 10 N 1.34780 * 119.99720 * 0.26811 * 8 7 6 11 11 C 1.46504 * 119.99416 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.64515 * 34.29975 * 11 10 8 13 13 C 1.54314 * 110.72019 * 271.15205 * 11 10 8 14 14 N 1.47025 * 107.27128 * 219.44629 * 13 11 10 15 15 C 1.36938 * 125.64889 * 178.97674 * 14 13 11 16 16 H 1.08001 * 119.99991 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00091 * 180.02562 * 15 14 13 18 18 N 1.31618 * 119.99759 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99802 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47459 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47232 * 119.99943 * 19 17 15 22 22 H 1.48505 * 109.46745 * 239.99869 * 19 17 15 23 23 C 1.47422 * 108.70560 * 358.94108 * 14 13 11 24 24 C 1.55129 * 104.93897 * 24.00302 * 23 14 13 25 25 H 1.08998 * 111.16170 * 205.13238 * 24 23 14 26 26 O 1.42900 * 110.93399 * 81.21647 * 24 23 14 27 27 C 1.35202 * 113.71956 * 0.49672 * 7 6 5 28 28 S 1.70770 * 124.72060 * 270.02499 * 5 4 2 29 29 H 1.09001 * 109.47593 * 59.99409 * 1 2 3 30 30 H 1.09007 * 109.47359 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47049 * 299.99375 * 1 2 3 32 32 H 1.09005 * 109.46833 * 240.00166 * 2 1 3 33 33 H 1.09008 * 109.47032 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46896 * 300.00144 * 3 2 1 35 35 H 1.08993 * 109.46808 * 60.00656 * 3 2 1 36 36 H 1.09000 * 109.46497 * 304.99899 * 4 2 1 37 37 H 1.09000 * 109.47312 * 184.99678 * 4 2 1 38 38 H 0.96991 * 120.00124 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.88471 * 338.86470 * 13 11 10 40 40 H 1.08996 * 109.88148 * 100.03028 * 13 11 10 41 41 H 0.97007 * 119.99475 * 180.02562 * 18 17 15 42 42 H 1.09003 * 110.36929 * 142.96163 * 23 14 13 43 43 H 1.08996 * 110.37049 * 265.18281 * 23 14 13 44 44 H 0.96697 * 114.00159 * 67.95711 * 26 24 23 45 45 H 1.07994 * 125.59170 * 179.71789 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 -2.1734 1.1887 6 7 2.3487 -3.1059 0.6547 7 6 1.8245 -4.3333 0.7050 8 6 2.4972 -5.5195 0.1489 9 8 1.9649 -6.6107 0.2222 10 7 3.7027 -5.3959 -0.4410 11 6 4.3722 -6.5760 -0.9936 12 1 3.6428 -7.2754 -1.4023 13 6 5.2444 -7.2614 0.0791 14 7 6.4828 -7.7005 -0.5805 15 6 7.5307 -8.3356 0.0308 16 1 7.4876 -8.5537 1.0877 17 6 8.6484 -8.6990 -0.7078 18 7 8.7007 -8.4337 -1.9959 19 14 10.0776 -9.5660 0.1261 20 1 9.7733 -9.7471 1.5682 21 1 10.2885 -10.8930 -0.5062 22 1 11.3073 -8.7465 -0.0208 23 6 6.4093 -7.3448 -2.0093 24 6 5.4046 -6.1647 -2.0763 25 1 4.9365 -6.1017 -3.0587 26 8 6.0415 -4.9319 -1.7348 27 6 0.6159 -4.3842 1.3090 28 16 0.1844 -2.8088 1.8131 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 3.1301 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 1.6054 -0.2618 2.1369 37 1 3.1264 -0.6445 1.2950 38 1 4.1270 -4.5256 -0.4996 39 1 5.4788 -6.5534 0.8741 40 1 4.7179 -8.1226 0.4902 41 1 9.4816 -8.6880 -2.5122 42 1 7.3880 -7.0320 -2.3733 43 1 6.0405 -8.1889 -2.5920 44 1 6.6953 -4.6343 -2.3821 45 1 0.0206 -5.2742 1.4498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084114065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:06 Heat of formation + Delta-G solvation = -48.503887 kcal Electronic energy + Delta-G solvation = -27155.723943 eV Core-core repulsion = 23299.463742 eV Total energy + Delta-G solvation = -3856.260201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -41.68354 -40.37674 -39.21821 -37.25800 -36.41733 -35.54424 -33.62438 -32.16295 -30.43620 -28.95010 -28.70840 -27.98810 -26.87105 -25.59273 -23.04580 -22.34474 -21.60435 -21.17370 -20.54982 -19.85338 -19.10923 -18.31658 -17.59155 -16.89878 -16.87545 -16.57215 -16.24181 -15.96937 -15.92148 -15.46698 -15.42074 -14.76529 -14.67220 -14.48327 -14.34314 -14.17140 -13.56426 -13.50655 -13.25933 -13.05960 -12.99071 -12.95875 -12.78142 -12.67743 -12.29760 -12.14127 -12.06902 -11.93964 -11.89291 -11.79823 -11.55269 -11.34184 -10.92166 -10.82143 -10.74943 -10.59581 -10.25977 -9.79675 -8.93521 -7.82921 -5.26674 -0.53551 0.23934 0.56251 0.86366 1.45110 1.45983 1.56571 2.04532 2.23342 2.47170 2.89760 3.18590 3.27965 3.58186 3.71452 3.79984 3.89723 3.97354 4.02123 4.09461 4.18432 4.24091 4.37742 4.42689 4.56038 4.67495 4.75670 4.79562 4.82119 4.87830 4.92199 4.97154 5.06240 5.12044 5.29739 5.34309 5.38376 5.43901 5.46306 5.50622 5.68351 6.22553 6.28200 6.60680 6.86961 7.06124 7.07547 7.69660 8.33105 9.19542 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017971 B = 0.002512 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.711737 B =11143.518308 C =11809.874033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.040 4.040 5 C 0.021 3.979 6 N -0.467 5.467 7 C -0.012 4.012 8 C 0.584 3.416 9 O -0.574 6.574 10 N -0.682 5.682 11 C 0.150 3.850 12 H 0.101 0.899 13 C 0.134 3.866 14 N -0.615 5.615 15 C -0.242 4.242 16 H 0.073 0.927 17 C -0.061 4.061 18 N -0.945 5.945 19 Si 0.983 3.017 20 H -0.273 1.273 21 H -0.289 1.289 22 H -0.286 1.286 23 C 0.129 3.871 24 C 0.090 3.910 25 H 0.095 0.905 26 O -0.564 6.564 27 C -0.241 4.241 28 S 0.298 5.702 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.420 0.580 39 H 0.018 0.982 40 H 0.014 0.986 41 H 0.250 0.750 42 H 0.093 0.907 43 H 0.004 0.996 44 H 0.396 0.604 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.434 22.283 4.281 29.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.110 4.110 3 C -0.200 4.200 4 C -0.081 4.081 5 C -0.259 4.259 6 N -0.183 5.183 7 C -0.147 4.147 8 C 0.370 3.630 9 O -0.454 6.454 10 N -0.332 5.332 11 C 0.044 3.956 12 H 0.119 0.881 13 C 0.007 3.993 14 N -0.342 5.342 15 C -0.371 4.371 16 H 0.091 0.909 17 C -0.253 4.253 18 N -0.594 5.594 19 Si 0.811 3.189 20 H -0.198 1.198 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.003 3.997 24 C 0.029 3.971 25 H 0.113 0.887 26 O -0.372 6.372 27 C -0.384 4.384 28 S 0.557 5.443 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.111 0.889 38 H 0.259 0.741 39 H 0.036 0.964 40 H 0.032 0.968 41 H 0.060 0.940 42 H 0.111 0.889 43 H 0.022 0.978 44 H 0.246 0.754 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -20.315 21.935 5.077 30.326 hybrid contribution 2.039 -1.697 -0.689 2.741 sum -18.276 20.239 4.388 27.620 Atomic orbital electron populations 1.22029 0.94277 1.01748 1.03388 1.21075 0.96685 0.96814 0.96425 1.21794 1.01165 0.94167 1.02894 1.20600 1.03340 0.83358 1.00807 1.27638 0.96337 1.01433 1.00461 1.66903 1.33718 0.98547 1.19091 1.20114 0.95408 0.91926 1.07286 1.17605 0.80985 0.87065 0.77384 1.90774 1.66775 1.27838 1.60007 1.45564 1.18388 1.12044 1.57247 1.21944 0.92719 0.87559 0.93346 0.88075 1.21603 0.87342 0.95519 0.94862 1.44550 1.15218 1.68498 1.05890 1.19423 0.94508 1.29755 0.93381 0.90936 1.25581 1.00737 1.02380 0.96626 1.69950 1.29942 1.53070 1.06473 0.84950 0.78786 0.77476 0.77703 1.19756 1.21560 1.21275 1.22533 0.99453 0.92924 0.84759 1.23347 0.92259 0.85270 0.96196 0.88714 1.86242 1.59452 1.37935 1.53569 1.26903 1.00248 1.06900 1.04351 1.82394 1.18378 0.93266 1.50288 0.91823 0.93526 0.90489 0.92553 0.92649 0.92053 0.91003 0.86652 0.88906 0.74134 0.96437 0.96757 0.93978 0.88942 0.97830 0.75399 0.78989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 8.89 71.98 0.64 -0.77 16 2 C -0.09 -1.01 2.91 -10.79 -0.03 -1.05 16 3 C -0.14 -1.20 9.19 71.98 0.66 -0.54 16 4 C -0.04 -0.49 5.27 29.85 0.16 -0.33 16 5 C 0.02 0.38 5.97 88.58 0.53 0.91 16 6 N -0.47 -12.28 10.12 -180.82 -1.83 -14.11 16 7 C -0.01 -0.36 6.70 40.56 0.27 -0.09 16 8 C 0.58 21.23 7.80 86.62 0.68 21.90 16 9 O -0.57 -23.85 16.40 -4.12 -0.07 -23.91 16 10 N -0.68 -24.78 5.08 -440.32 -2.24 -27.02 16 11 C 0.15 6.06 3.15 46.18 0.15 6.21 16 12 H 0.10 4.10 7.62 -2.39 -0.02 4.08 16 13 C 0.13 6.47 7.00 86.73 0.61 7.08 16 14 N -0.62 -33.67 3.40 -691.57 -2.35 -36.02 16 15 C -0.24 -14.26 10.27 84.03 0.86 -13.40 16 16 H 0.07 4.22 7.83 -2.91 -0.02 4.19 16 17 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 18 N -0.94 -55.63 10.09 21.65 0.22 -55.41 16 19 Si 0.98 46.59 29.55 68.60 2.03 48.62 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 23 C 0.13 6.33 5.62 86.93 0.49 6.82 16 24 C 0.09 3.41 4.31 32.06 0.14 3.55 16 25 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 26 O -0.56 -20.07 12.23 -148.98 -1.82 -21.89 16 27 C -0.24 -5.46 10.62 67.12 0.71 -4.75 16 28 S 0.30 4.16 21.36 -56.49 -1.21 2.95 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.50 6.13 -2.38 -0.01 0.48 16 31 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.42 14.74 7.10 -92.71 -0.66 14.08 16 39 H 0.02 0.89 8.03 -2.38 -0.02 0.87 16 40 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 42 H 0.09 4.99 5.87 -2.39 -0.01 4.98 16 43 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.40 11.08 9.12 -74.06 -0.68 10.41 16 45 H 0.19 4.05 8.03 -2.91 -0.02 4.03 16 Total: -1.00 -74.73 380.32 -1.25 -75.98 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -0.31 Total: 28.30 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: 6.32 Total: 22.51 kcal Atomic # 7 Polarization: -126.36 SS G_CDS: -6.20 Total: -132.55 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -1.89 Total: -45.80 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.21 Total: 2.95 kcal Total: -74.73 -1.25 -75.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084114065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.480 kcal (2) G-P(sol) polarization free energy of solvation -74.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.13 seconds