Wall clock time and date at job start Tue Mar 31 2020 23:24:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52999 * 109.47172 * 2 1
4 4 C 1.53004 * 109.47134 * 120.00035 * 2 1 3
5 5 C 1.50700 * 109.46840 * 174.99688 * 4 2 1
6 6 N 1.29428 * 124.80237 * 89.98078 * 5 4 2
7 7 C 1.30937 * 117.36637 * 180.02562 * 6 5 4
8 8 C 1.35662 * 114.19041 * 359.97438 * 7 6 5
9 9 C 1.46690 * 126.13042 * 179.97438 * 8 7 6
10 10 O 1.21687 * 119.99415 * 180.02562 * 9 8 7
11 11 N 1.34777 * 119.99998 * 0.03150 * 9 8 7
12 12 C 1.46497 * 119.99762 * 179.97438 * 11 9 8
13 13 H 1.08997 * 110.64198 * 36.68435 * 12 11 9
14 14 C 1.54320 * 110.71903 * 273.54291 * 12 11 9
15 15 N 1.47018 * 107.27210 * 263.83160 * 14 12 11
16 16 C 1.36945 * 125.64695 * 181.02594 * 15 14 12
17 17 H 1.07999 * 120.00077 * 359.97438 * 16 15 14
18 18 C 1.38812 * 119.99637 * 179.97438 * 16 15 14
19 19 N 1.31617 * 120.00227 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 119.99854 * 179.97438 * 18 16 15
21 21 H 1.48505 * 109.46819 * 59.99973 * 20 18 16
22 22 H 1.48494 * 109.47285 * 179.97438 * 20 18 16
23 23 H 1.48503 * 109.47086 * 300.00269 * 20 18 16
24 24 C 1.47421 * 108.70379 * 1.28563 * 15 14 12
25 25 C 1.55129 * 104.72458 * 335.55582 * 24 15 14
26 26 H 1.09000 * 111.22138 * 279.17798 * 25 24 15
27 27 O 1.42896 * 110.90721 * 155.27245 * 25 24 15
28 28 S 1.70947 * 124.80831 * 270.32659 * 5 4 2
29 29 H 1.08997 * 109.47082 * 299.99601 * 1 2 3
30 30 H 1.08991 * 109.47472 * 59.99991 * 1 2 3
31 31 H 1.09001 * 109.47210 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.46799 * 240.00007 * 2 1 3
33 33 H 1.08993 * 109.47447 * 300.00377 * 3 2 1
34 34 H 1.09005 * 109.46597 * 59.99970 * 3 2 1
35 35 H 1.09001 * 109.47106 * 179.97438 * 3 2 1
36 36 H 1.09005 * 109.47135 * 55.00197 * 4 2 1
37 37 H 1.09000 * 109.47348 * 295.00064 * 4 2 1
38 38 H 1.08003 * 122.90769 * 179.97438 * 7 6 5
39 39 H 0.96994 * 119.99689 * 359.97438 * 11 9 8
40 40 H 1.09010 * 109.88205 * 144.41448 * 14 12 11
41 41 H 1.09004 * 110.01290 * 23.32502 * 14 12 11
42 42 H 0.97005 * 120.00046 * 179.97438 * 19 18 16
43 43 H 1.08996 * 110.36244 * 94.48455 * 24 15 14
44 44 H 1.08997 * 110.36930 * 216.80538 * 24 15 14
45 45 H 0.96696 * 114.00303 * 67.97762 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2493
5 6 3.5419 -0.8295 1.1888
6 7 4.3655 0.0500 1.6615
7 6 5.6455 -0.1916 1.5288
8 6 5.9285 -1.3595 0.8992
9 6 7.2676 -1.8854 0.6128
10 8 7.3927 -2.9508 0.0383
11 7 8.3592 -1.1886 0.9861
12 6 9.6966 -1.7141 0.7005
13 1 9.7124 -2.2206 -0.2645
14 6 10.1609 -2.6648 1.8238
15 7 10.9912 -1.8773 2.7468
16 6 11.6134 -2.3576 3.8682
17 1 11.5132 -3.3987 4.1373
18 6 12.3729 -1.5063 4.6589
19 7 12.4946 -0.2374 4.3312
20 14 13.2210 -2.1612 6.1890
21 1 14.1700 -3.2376 5.8065
22 1 13.9638 -1.0601 6.8530
23 1 12.2040 -2.7070 7.1235
24 6 11.0379 -0.4836 2.2686
25 6 10.7536 -0.5792 0.7466
26 1 11.6509 -0.8585 0.1944
27 8 10.2112 0.6465 0.2512
28 16 4.3990 -2.1270 0.4788
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3634 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.6767 1.9564 -0.8899
34 1 1.6766 1.9563 0.8900
35 1 3.1300 1.4425 0.0005
36 1 1.6054 -1.7199 1.2952
37 1 1.7517 -0.1584 2.1370
38 1 6.4100 0.4807 1.8894
39 1 8.2593 -0.3393 1.4437
40 1 10.7481 -3.4799 1.4005
41 1 9.2970 -3.0667 2.3533
42 1 13.0251 0.3576 4.8840
43 1 10.2715 0.1130 2.7633
44 1 12.0248 -0.0553 2.4435
45 1 10.8353 1.3850 0.2605
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001084114497.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:24:13
Heat of formation + Delta-G solvation = -21.174507 kcal
Electronic energy + Delta-G solvation = -27038.560376 eV
Core-core repulsion = 23183.485265 eV
Total energy + Delta-G solvation = -3855.075110 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-40.27154 -39.37062 -37.75232 -36.63686 -35.12895 -33.86894 -32.00190 -31.01844
-28.89746 -27.99798 -27.44062 -26.95798 -24.67432 -24.38048 -22.13883 -20.73830
-20.50699 -20.09935 -19.56120 -18.13255 -17.42615 -16.98938 -16.71325 -15.60415
-15.41603 -15.34155 -15.01468 -14.68150 -14.59003 -14.13432 -14.02288 -13.91395
-13.52300 -13.04468 -12.91011 -12.69709 -12.56479 -12.43771 -12.33487 -12.20552
-11.64632 -11.47807 -11.38796 -11.25268 -11.17656 -11.07580 -11.00317 -10.88443
-10.35929 -10.22403 -10.03253 -9.87209 -9.56093 -9.52971 -9.25882 -9.04303
-8.80247 -8.65292 -6.96110 -5.75906 -3.18047 0.17868 1.05337 1.58149
2.41547 3.30812 3.35987 3.40268 3.41216 3.43393 3.82837 4.35283
4.45712 4.52280 4.53433 4.60232 4.90728 5.00253 5.17681 5.18932
5.23641 5.24610 5.34682 5.35106 5.44958 5.48834 5.56639 5.60983
5.63871 5.77451 5.80547 5.90716 5.96986 6.07724 6.08262 6.17456
6.39214 6.60063 6.89478 7.21993 7.49090 7.50083 7.66566 7.72913
8.00295 8.21284 8.36608 9.10602 9.70982 10.33265 11.28201
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.018052 B = 0.002488 C = 0.002434
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1550.710088 B =11250.217722 C =11498.851889
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.091 4.091
3 C -0.147 4.147
4 C -0.042 4.042
5 C 0.041 3.959
6 N -0.472 5.472
7 C 0.093 3.907
8 C -0.285 4.285
9 C 0.592 3.408
10 O -0.545 6.545
11 N -0.683 5.683
12 C 0.146 3.854
13 H 0.093 0.907
14 C 0.126 3.874
15 N -0.600 5.600
16 C -0.222 4.222
17 H 0.079 0.921
18 C -0.011 4.011
19 N -0.925 5.925
20 Si 0.918 3.082
21 H -0.284 1.284
22 H -0.289 1.289
23 H -0.285 1.285
24 C 0.127 3.873
25 C 0.064 3.936
26 H 0.074 0.926
27 O -0.566 6.566
28 S 0.217 5.783
29 H 0.058 0.942
30 H 0.059 0.941
31 H 0.056 0.944
32 H 0.072 0.928
33 H 0.052 0.948
34 H 0.058 0.942
35 H 0.060 0.940
36 H 0.087 0.913
37 H 0.097 0.903
38 H 0.182 0.818
39 H 0.406 0.594
40 H 0.038 0.962
41 H 0.033 0.967
42 H 0.254 0.746
43 H 0.021 0.979
44 H 0.112 0.888
45 H 0.380 0.620
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.619 2.843 -9.856 22.139
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.111 4.111
3 C -0.205 4.205
4 C -0.083 4.083
5 C -0.234 4.234
6 N -0.186 5.186
7 C -0.065 4.065
8 C -0.409 4.409
9 C 0.376 3.624
10 O -0.424 6.424
11 N -0.333 5.333
12 C 0.040 3.960
13 H 0.111 0.889
14 C -0.001 4.001
15 N -0.328 5.328
16 C -0.350 4.350
17 H 0.097 0.903
18 C -0.206 4.206
19 N -0.573 5.573
20 Si 0.748 3.252
21 H -0.211 1.211
22 H -0.215 1.215
23 H -0.212 1.212
24 C 0.002 3.998
25 C 0.003 3.997
26 H 0.091 0.909
27 O -0.371 6.371
28 S 0.475 5.525
29 H 0.077 0.923
30 H 0.078 0.922
31 H 0.075 0.925
32 H 0.091 0.909
33 H 0.072 0.928
34 H 0.077 0.923
35 H 0.079 0.921
36 H 0.106 0.894
37 H 0.116 0.884
38 H 0.199 0.801
39 H 0.242 0.758
40 H 0.056 0.944
41 H 0.051 0.949
42 H 0.064 0.936
43 H 0.039 0.961
44 H 0.130 0.870
45 H 0.227 0.773
Dipole moment (debyes) X Y Z Total
from point charges -20.444 1.298 -10.428 22.987
hybrid contribution 1.694 1.056 1.589 2.551
sum -18.750 2.354 -8.839 20.862
Atomic orbital electron populations
1.21829 0.94275 1.01980 1.02275 1.21139 0.96063 0.97106 0.96816
1.21850 1.01927 0.95025 1.01666 1.20455 0.84773 1.02440 1.00622
1.27476 1.01498 0.94421 0.99966 1.66136 1.02152 1.29910 1.20430
1.22232 0.92733 0.94817 0.96735 1.25811 0.99142 1.02407 1.13580
1.16673 0.82458 0.84212 0.79019 1.90819 1.86821 1.21819 1.42969
1.45437 1.04733 1.24343 1.58812 1.22071 0.80246 0.94581 0.99056
0.88859 1.21757 0.94442 0.93581 0.90328 1.44334 1.56664 1.04970
1.26790 1.19057 1.22723 0.94443 0.98799 0.90298 1.24786 1.00666
0.95673 0.99478 1.69718 1.44730 1.03373 1.39522 0.86102 0.79225
0.77514 0.82371 1.21051 1.21524 1.21165 1.22623 1.03768 0.87039
0.86398 1.23763 0.94177 0.83509 0.98236 0.90850 1.86327 1.43406
1.20373 1.87009 1.83969 0.94879 1.22049 1.51581 0.92310 0.92238
0.92455 0.90917 0.92842 0.92319 0.92077 0.89423 0.88446 0.80112
0.75830 0.94392 0.94947 0.93572 0.96136 0.87006 0.77318
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.77 9.19 37.16 0.34 -0.43 16
2 C -0.09 -0.63 2.91 -90.62 -0.26 -0.90 16
3 C -0.15 -1.19 8.99 37.16 0.33 -0.85 16
4 C -0.04 -0.32 5.27 -27.88 -0.15 -0.47 16
5 C 0.04 0.45 5.88 -13.29 -0.08 0.37 16
6 N -0.47 -6.04 9.74 -11.50 -0.11 -6.16 16
7 C 0.09 1.24 10.93 -18.85 -0.21 1.04 16
8 C -0.28 -4.18 6.48 -37.09 -0.24 -4.42 16
9 C 0.59 10.31 7.78 -12.85 -0.10 10.21 16
10 O -0.54 -10.93 16.69 5.20 0.09 -10.85 16
11 N -0.68 -11.73 4.76 -53.33 -0.25 -11.98 16
12 C 0.15 2.69 3.14 -66.10 -0.21 2.49 16
13 H 0.09 1.69 7.69 -51.93 -0.40 1.29 16
14 C 0.13 2.70 6.98 -3.07 -0.02 2.68 16
15 N -0.60 -14.89 3.39 -169.94 -0.58 -15.47 16
16 C -0.22 -6.06 10.27 -15.06 -0.15 -6.22 16
17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16
18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16
19 N -0.92 -25.85 10.08 55.49 0.56 -25.29 16
20 Si 0.92 21.71 29.55 -169.99 -5.02 16.68 16
21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16
22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
24 C 0.13 2.87 5.62 -2.41 -0.01 2.85 16
25 C 0.06 1.14 4.23 -24.46 -0.10 1.04 16
26 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16
27 O -0.57 -8.73 12.63 -35.23 -0.44 -9.17 16
28 S 0.22 2.60 23.01 -107.50 -2.47 0.13 16
29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16
30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16
31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16
34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
35 H 0.06 0.62 6.80 -51.93 -0.35 0.27 16
36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16
37 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16
38 H 0.18 2.17 7.15 -52.48 -0.38 1.80 16
39 H 0.41 6.56 6.91 -40.82 -0.28 6.28 16
40 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16
41 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16
42 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16
43 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16
44 H 0.11 2.82 5.85 -51.93 -0.30 2.51 16
45 H 0.38 4.43 9.12 45.56 0.42 4.85 16
LS Contribution 381.61 15.07 5.75 5.75
Total: -1.00 -32.07 381.61 -9.36 -41.42
By element:
Atomic # 1 Polarization: 13.85 SS G_CDS: -5.91 Total: 7.94 kcal
Atomic # 6 Polarization: 7.94 SS G_CDS: -0.96 Total: 6.99 kcal
Atomic # 7 Polarization: -58.51 SS G_CDS: -0.38 Total: -58.89 kcal
Atomic # 8 Polarization: -19.66 SS G_CDS: -0.36 Total: -20.02 kcal
Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal
Atomic # 16 Polarization: 2.60 SS G_CDS: -2.47 Total: 0.13 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -32.07 -9.36 -41.42 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001084114497.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.248 kcal
(2) G-P(sol) polarization free energy of solvation -32.067 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.819 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.175 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds