Wall clock time and date at job start Tue Mar 31 2020 23:24:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52999 * 109.47172 * 2 1
4 4 C 1.53004 * 109.47134 * 120.00035 * 2 1 3
5 5 C 1.50700 * 109.46840 * 174.99688 * 4 2 1
6 6 N 1.29428 * 124.80237 * 89.98078 * 5 4 2
7 7 C 1.30937 * 117.36637 * 180.02562 * 6 5 4
8 8 C 1.35662 * 114.19041 * 359.97438 * 7 6 5
9 9 C 1.46690 * 126.13042 * 179.97438 * 8 7 6
10 10 O 1.21687 * 119.99415 * 180.02562 * 9 8 7
11 11 N 1.34777 * 119.99998 * 0.03150 * 9 8 7
12 12 C 1.46497 * 119.99762 * 179.97438 * 11 9 8
13 13 H 1.08997 * 110.64198 * 36.68435 * 12 11 9
14 14 C 1.54320 * 110.71903 * 273.54291 * 12 11 9
15 15 N 1.47018 * 107.27210 * 263.83160 * 14 12 11
16 16 C 1.36945 * 125.64695 * 181.02594 * 15 14 12
17 17 H 1.07999 * 120.00077 * 359.97438 * 16 15 14
18 18 C 1.38812 * 119.99637 * 179.97438 * 16 15 14
19 19 N 1.31617 * 120.00227 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 119.99854 * 179.97438 * 18 16 15
21 21 H 1.48505 * 109.46819 * 59.99973 * 20 18 16
22 22 H 1.48494 * 109.47285 * 179.97438 * 20 18 16
23 23 H 1.48503 * 109.47086 * 300.00269 * 20 18 16
24 24 C 1.47421 * 108.70379 * 1.28563 * 15 14 12
25 25 C 1.55129 * 104.72458 * 335.55582 * 24 15 14
26 26 H 1.09000 * 111.22138 * 279.17798 * 25 24 15
27 27 O 1.42896 * 110.90721 * 155.27245 * 25 24 15
28 28 S 1.70947 * 124.80831 * 270.32659 * 5 4 2
29 29 H 1.08997 * 109.47082 * 299.99601 * 1 2 3
30 30 H 1.08991 * 109.47472 * 59.99991 * 1 2 3
31 31 H 1.09001 * 109.47210 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.46799 * 240.00007 * 2 1 3
33 33 H 1.08993 * 109.47447 * 300.00377 * 3 2 1
34 34 H 1.09005 * 109.46597 * 59.99970 * 3 2 1
35 35 H 1.09001 * 109.47106 * 179.97438 * 3 2 1
36 36 H 1.09005 * 109.47135 * 55.00197 * 4 2 1
37 37 H 1.09000 * 109.47348 * 295.00064 * 4 2 1
38 38 H 1.08003 * 122.90769 * 179.97438 * 7 6 5
39 39 H 0.96994 * 119.99689 * 359.97438 * 11 9 8
40 40 H 1.09010 * 109.88205 * 144.41448 * 14 12 11
41 41 H 1.09004 * 110.01290 * 23.32502 * 14 12 11
42 42 H 0.97005 * 120.00046 * 179.97438 * 19 18 16
43 43 H 1.08996 * 110.36244 * 94.48455 * 24 15 14
44 44 H 1.08997 * 110.36930 * 216.80538 * 24 15 14
45 45 H 0.96696 * 114.00303 * 67.97762 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2493
5 6 3.5419 -0.8295 1.1888
6 7 4.3655 0.0500 1.6615
7 6 5.6455 -0.1916 1.5288
8 6 5.9285 -1.3595 0.8992
9 6 7.2676 -1.8854 0.6128
10 8 7.3927 -2.9508 0.0383
11 7 8.3592 -1.1886 0.9861
12 6 9.6966 -1.7141 0.7005
13 1 9.7124 -2.2206 -0.2645
14 6 10.1609 -2.6648 1.8238
15 7 10.9912 -1.8773 2.7468
16 6 11.6134 -2.3576 3.8682
17 1 11.5132 -3.3987 4.1373
18 6 12.3729 -1.5063 4.6589
19 7 12.4946 -0.2374 4.3312
20 14 13.2210 -2.1612 6.1890
21 1 14.1700 -3.2376 5.8065
22 1 13.9638 -1.0601 6.8530
23 1 12.2040 -2.7070 7.1235
24 6 11.0379 -0.4836 2.2686
25 6 10.7536 -0.5792 0.7466
26 1 11.6509 -0.8585 0.1944
27 8 10.2112 0.6465 0.2512
28 16 4.3990 -2.1270 0.4788
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3634 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.6767 1.9564 -0.8899
34 1 1.6766 1.9563 0.8900
35 1 3.1300 1.4425 0.0005
36 1 1.6054 -1.7199 1.2952
37 1 1.7517 -0.1584 2.1370
38 1 6.4100 0.4807 1.8894
39 1 8.2593 -0.3393 1.4437
40 1 10.7481 -3.4799 1.4005
41 1 9.2970 -3.0667 2.3533
42 1 13.0251 0.3576 4.8840
43 1 10.2715 0.1130 2.7633
44 1 12.0248 -0.0553 2.4435
45 1 10.8353 1.3850 0.2605
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001084114497.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:24:12
Heat of formation + Delta-G solvation = -44.191308 kcal
Electronic energy + Delta-G solvation = -27039.558459 eV
Core-core repulsion = 23183.485265 eV
Total energy + Delta-G solvation = -3856.073194 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.45915 -40.61367 -39.25803 -37.28452 -36.66123 -35.44258 -33.71476 -32.16997
-30.32081 -29.30494 -28.54278 -27.95862 -26.38022 -25.45745 -23.38039 -22.29922
-21.65335 -21.21371 -20.81569 -19.24191 -18.92648 -18.48560 -18.11430 -17.18374
-16.68571 -16.46048 -16.05602 -15.89259 -15.77095 -15.51221 -15.27538 -14.87115
-14.77414 -14.54963 -14.37578 -14.06077 -13.90195 -13.46805 -13.20324 -13.04661
-12.90538 -12.77871 -12.74669 -12.72927 -12.62938 -12.11139 -12.10263 -11.97025
-11.81031 -11.74104 -11.61386 -11.40433 -10.86051 -10.76750 -10.64268 -10.57175
-10.22066 -9.92545 -8.95855 -7.82053 -5.27100 -0.84429 0.06985 0.60227
1.33961 1.46568 1.48614 1.55061 2.04804 2.10670 2.45816 2.96576
3.08481 3.28799 3.62874 3.67290 3.79067 3.79879 3.92910 3.97670
4.00971 4.11194 4.29520 4.33351 4.48721 4.60685 4.65293 4.69329
4.81457 4.81834 4.86196 4.87797 4.94926 5.05259 5.13553 5.28378
5.37880 5.39353 5.45625 5.45893 5.47975 5.70721 6.23000 6.35778
6.52631 6.84934 7.00864 7.06940 7.69973 8.32053 9.18866
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.018052 B = 0.002488 C = 0.002434
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1550.710088 B =11250.217722 C =11498.851889
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.088 4.088
3 C -0.147 4.147
4 C -0.045 4.045
5 C 0.061 3.939
6 N -0.492 5.492
7 C 0.105 3.895
8 C -0.323 4.323
9 C 0.593 3.407
10 O -0.577 6.577
11 N -0.682 5.682
12 C 0.153 3.847
13 H 0.102 0.898
14 C 0.127 3.873
15 N -0.618 5.618
16 C -0.243 4.243
17 H 0.077 0.923
18 C -0.059 4.059
19 N -0.943 5.943
20 Si 0.980 3.020
21 H -0.277 1.277
22 H -0.290 1.290
23 H -0.283 1.283
24 C 0.134 3.866
25 C 0.089 3.911
26 H 0.088 0.912
27 O -0.561 6.561
28 S 0.234 5.766
29 H 0.062 0.938
30 H 0.063 0.937
31 H 0.068 0.932
32 H 0.071 0.929
33 H 0.060 0.940
34 H 0.059 0.941
35 H 0.037 0.963
36 H 0.112 0.888
37 H 0.104 0.896
38 H 0.189 0.811
39 H 0.410 0.590
40 H 0.041 0.959
41 H 0.016 0.984
42 H 0.250 0.750
43 H 0.000 1.000
44 H 0.086 0.914
45 H 0.399 0.601
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.352 2.982 -10.296 23.891
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.108 4.108
3 C -0.205 4.205
4 C -0.086 4.086
5 C -0.213 4.213
6 N -0.206 5.206
7 C -0.054 4.054
8 C -0.447 4.447
9 C 0.380 3.620
10 O -0.459 6.459
11 N -0.331 5.331
12 C 0.047 3.953
13 H 0.120 0.880
14 C 0.000 4.000
15 N -0.345 5.345
16 C -0.371 4.371
17 H 0.095 0.905
18 C -0.252 4.252
19 N -0.592 5.592
20 Si 0.808 3.192
21 H -0.203 1.203
22 H -0.216 1.216
23 H -0.209 1.209
24 C 0.009 3.991
25 C 0.028 3.972
26 H 0.106 0.894
27 O -0.369 6.369
28 S 0.493 5.507
29 H 0.081 0.919
30 H 0.082 0.918
31 H 0.087 0.913
32 H 0.090 0.910
33 H 0.079 0.921
34 H 0.078 0.922
35 H 0.056 0.944
36 H 0.130 0.870
37 H 0.123 0.877
38 H 0.206 0.794
39 H 0.247 0.753
40 H 0.059 0.941
41 H 0.034 0.966
42 H 0.060 0.940
43 H 0.018 0.982
44 H 0.104 0.896
45 H 0.249 0.751
Dipole moment (debyes) X Y Z Total
from point charges -22.190 1.451 -10.889 24.760
hybrid contribution 2.110 1.062 1.725 2.925
sum -20.080 2.513 -9.164 22.215
Atomic orbital electron populations
1.21800 0.92556 1.02894 1.02713 1.21137 0.97383 0.96056 0.96230
1.21847 1.00357 0.96117 1.02133 1.20729 0.82349 1.04204 1.01317
1.28149 1.02783 0.93058 0.97337 1.66238 1.01981 1.30640 1.21759
1.22405 0.93366 0.94262 0.95364 1.25599 0.98866 1.03887 1.16370
1.16969 0.83307 0.83625 0.78087 1.90788 1.87408 1.23156 1.44546
1.45385 1.04391 1.24482 1.58877 1.21899 0.81024 0.94277 0.98065
0.87964 1.21807 0.93408 0.94190 0.90569 1.44562 1.56934 1.06220
1.26821 1.19353 1.23140 0.94644 0.99988 0.90540 1.25557 1.01453
0.96062 1.02170 1.69941 1.45061 1.04083 1.40160 0.85141 0.78150
0.76940 0.79007 1.20257 1.21600 1.20917 1.22429 1.01532 0.85645
0.89496 1.23349 0.94437 0.84457 0.94980 0.89449 1.86308 1.44068
1.20228 1.86259 1.83861 0.93410 1.21980 1.51417 0.91891 0.91844
0.91323 0.91016 0.92092 0.92219 0.94401 0.86957 0.87743 0.79435
0.75320 0.94060 0.96610 0.94038 0.98225 0.89618 0.75092
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.08 9.19 71.98 0.66 -0.42 16
2 C -0.09 -1.02 2.91 -10.79 -0.03 -1.05 16
3 C -0.15 -2.15 8.99 71.98 0.65 -1.50 16
4 C -0.05 -0.58 5.27 29.85 0.16 -0.42 16
5 C 0.06 1.23 5.88 88.46 0.52 1.75 16
6 N -0.49 -12.09 9.74 -190.31 -1.85 -13.94 16
7 C 0.11 2.77 10.93 84.23 0.92 3.69 16
8 C -0.32 -9.41 6.48 23.88 0.15 -9.26 16
9 C 0.59 20.76 7.78 86.45 0.67 21.43 16
10 O -0.58 -23.32 16.69 -4.31 -0.07 -23.40 16
11 N -0.68 -23.38 4.76 -440.87 -2.10 -25.48 16
12 C 0.15 5.61 3.14 46.18 0.14 5.76 16
13 H 0.10 3.62 7.69 -2.39 -0.02 3.60 16
14 C 0.13 5.51 6.98 86.73 0.60 6.11 16
15 N -0.62 -31.20 3.39 -691.56 -2.35 -33.55 16
16 C -0.24 -13.45 10.27 84.03 0.86 -12.59 16
17 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16
18 C -0.06 -3.28 5.49 84.86 0.47 -2.81 16
19 N -0.94 -53.52 10.08 21.65 0.22 -53.31 16
20 Si 0.98 44.86 29.55 68.60 2.03 46.89 16
21 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16
22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16
23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16
24 C 0.13 6.14 5.62 86.93 0.49 6.63 16
25 C 0.09 3.10 4.23 32.06 0.14 3.24 16
26 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16
27 O -0.56 -16.41 12.63 -148.98 -1.88 -18.29 16
28 S 0.23 5.37 23.01 -56.49 -1.30 4.07 16
29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16
30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16
31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16
32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16
33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
34 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16
35 H 0.04 0.73 6.80 -2.39 -0.02 0.71 16
36 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16
37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16
38 H 0.19 4.47 7.15 -2.91 -0.02 4.45 16
39 H 0.41 13.26 6.91 -92.71 -0.64 12.62 16
40 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16
41 H 0.02 0.74 8.05 -2.38 -0.02 0.72 16
42 H 0.25 13.81 8.31 -92.70 -0.77 13.04 16
43 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16
44 H 0.09 4.41 5.85 -2.39 -0.01 4.39 16
45 H 0.40 8.53 9.12 -74.06 -0.68 7.86 16
Total: -1.00 -69.43 381.61 -1.19 -70.62
By element:
Atomic # 1 Polarization: 26.10 SS G_CDS: -0.29 Total: 25.81 kcal
Atomic # 6 Polarization: 14.16 SS G_CDS: 6.41 Total: 20.57 kcal
Atomic # 7 Polarization: -120.20 SS G_CDS: -6.08 Total: -126.28 kcal
Atomic # 8 Polarization: -39.73 SS G_CDS: -1.95 Total: -41.68 kcal
Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal
Atomic # 16 Polarization: 5.37 SS G_CDS: -1.30 Total: 4.07 kcal
Total: -69.43 -1.19 -70.62 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001084114497.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.433 kcal
(2) G-P(sol) polarization free energy of solvation -69.432 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.999 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.192 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.624 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.191 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds