Wall clock time and date at job start Wed Apr 1 2020 00:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46643 * 2 1 4 4 H 1.08994 * 109.99807 * 304.61609 * 3 2 1 5 5 C 1.54340 * 109.98751 * 183.58340 * 3 2 1 6 6 H 1.09002 * 110.51407 * 336.97573 * 5 3 2 7 7 N 1.46498 * 110.85067 * 100.19520 * 5 3 2 8 8 C 1.34774 * 120.00395 * 200.14331 * 7 5 3 9 9 O 1.21688 * 119.99519 * 0.02562 * 8 7 5 10 10 C 1.46675 * 120.00130 * 180.02562 * 8 7 5 11 11 S 1.76211 * 126.13293 * 0.02562 * 10 8 7 12 12 C 1.70949 * 90.31653 * 179.97438 * 11 10 8 13 13 N 1.29432 * 110.39251 * 0.02562 * 12 11 10 14 14 C 1.30943 * 117.36037 * 359.72652 * 13 12 11 15 15 C 1.50705 * 122.90307 * 180.30870 * 14 13 12 16 16 O 1.42901 * 109.47102 * 270.19235 * 15 14 13 17 17 C 1.42898 * 113.99858 * 180.02562 * 16 15 14 18 18 C 1.55155 * 103.01949 * 218.66416 * 5 3 2 19 19 C 1.54919 * 101.58150 * 35.30862 * 18 5 3 20 20 N 1.47019 * 109.88134 * 65.71875 * 3 2 1 21 21 C 1.36934 * 125.65134 * 298.38829 * 20 3 2 22 22 H 1.08009 * 119.99580 * 333.71688 * 21 20 3 23 23 C 1.38804 * 120.00285 * 153.71028 * 21 20 3 24 24 N 1.31621 * 120.00316 * 334.84121 * 23 21 20 25 25 Si 1.86803 * 119.99924 * 154.83885 * 23 21 20 26 26 H 1.48504 * 109.46817 * 90.00557 * 25 23 21 27 27 H 1.48499 * 109.47385 * 330.00167 * 25 23 21 28 28 H 1.48505 * 109.47293 * 210.00051 * 25 23 21 29 29 H 1.09003 * 109.47043 * 171.79480 * 1 2 3 30 30 H 1.09000 * 109.47383 * 291.79134 * 1 2 3 31 31 H 1.09006 * 109.47178 * 51.79643 * 1 2 3 32 32 H 1.09000 * 109.47428 * 239.99996 * 2 1 3 33 33 H 1.08996 * 109.47296 * 119.99555 * 2 1 3 34 34 H 0.97006 * 119.99848 * 20.15202 * 7 5 3 35 35 H 1.08001 * 124.80547 * 179.97438 * 12 11 10 36 36 H 1.08999 * 109.47081 * 30.19432 * 15 14 13 37 37 H 1.09005 * 109.46579 * 150.19569 * 15 14 13 38 38 H 1.09004 * 109.47137 * 300.00161 * 17 16 15 39 39 H 1.09004 * 109.46791 * 60.00160 * 17 16 15 40 40 H 1.09002 * 109.47134 * 179.97438 * 17 16 15 41 41 H 1.08999 * 111.00589 * 277.23090 * 18 5 3 42 42 H 1.09000 * 111.00554 * 153.37944 * 18 5 3 43 43 H 1.08997 * 110.36502 * 204.14890 * 19 18 5 44 44 H 1.09001 * 110.36410 * 81.82771 * 19 18 5 45 45 H 0.96996 * 119.99635 * 353.73227 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6155 1.9879 -0.8429 5 6 3.5806 1.4576 -0.0907 6 1 3.9933 0.5136 0.2653 7 7 4.0196 1.7330 -1.4609 8 6 5.2661 1.3986 -1.8492 9 8 6.0268 0.8675 -1.0617 10 6 5.7058 1.6748 -3.2210 11 16 4.7440 2.4336 -4.4875 12 6 6.0549 2.2996 -5.5765 13 7 7.0679 1.7408 -4.9962 14 6 6.9278 1.3966 -3.7406 15 6 8.0276 0.7446 -2.9428 16 8 7.9355 -0.6751 -3.0764 17 6 8.9379 -1.3931 -2.3541 18 6 3.9751 2.6213 0.8566 19 6 2.9032 2.4949 1.9678 20 7 1.6705 2.1035 1.2603 21 6 0.3931 2.3152 1.7059 22 1 -0.4195 2.3937 0.9986 23 6 0.1425 2.4288 3.0664 24 7 0.9575 1.8685 3.9348 25 14 -1.3516 3.3770 3.6649 26 1 -2.5094 2.4543 3.7813 27 1 -1.6737 4.4559 2.6967 28 1 -1.0594 3.9745 4.9927 29 1 -0.3633 -1.0172 -0.1467 30 1 -0.3634 0.3815 0.9542 31 1 -0.3634 0.6356 -0.8076 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.4132 2.1561 -2.0887 35 1 6.0396 2.6332 -6.6036 36 1 8.9951 1.0826 -3.3141 37 1 7.9256 1.0181 -1.8926 38 1 9.9245 -1.0995 -2.7127 39 1 8.8545 -1.1639 -1.2917 40 1 8.7991 -2.4634 -2.5065 41 1 3.8990 3.5822 0.3478 42 1 4.9764 2.4735 1.2611 43 1 2.7641 3.4516 2.4713 44 1 3.1894 1.7258 2.6852 45 1 1.6806 1.3010 3.6250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087754632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:10 Heat of formation + Delta-G solvation = -9.329072 kcal Electronic energy + Delta-G solvation = -27786.508101 eV Core-core repulsion = 23931.946648 eV Total energy + Delta-G solvation = -3854.561454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.66572 -39.47678 -37.86525 -37.60126 -34.35865 -32.62396 -32.16072 -31.49825 -29.04012 -28.14984 -26.88942 -26.23496 -24.78285 -24.44279 -22.36779 -21.61292 -20.42455 -20.07209 -19.23520 -18.80825 -17.38990 -17.01516 -16.65427 -16.32643 -15.67197 -15.38507 -15.15244 -15.01117 -14.42027 -14.31047 -14.08860 -13.81253 -13.60829 -13.17627 -13.14372 -12.93537 -12.49812 -12.44592 -12.16336 -11.75594 -11.68250 -11.47358 -11.12791 -10.96731 -10.77952 -10.54516 -10.37921 -10.23470 -10.15917 -10.08700 -9.99743 -9.87409 -9.85432 -9.58497 -9.45561 -9.33343 -8.86278 -8.42170 -6.93774 -6.08112 -3.24981 -0.07906 0.84584 1.22276 2.09761 2.98776 3.05420 3.47227 3.51628 3.62949 3.66328 4.09891 4.53516 4.62017 4.67752 4.82031 5.09281 5.14709 5.26224 5.27152 5.31294 5.34773 5.38567 5.44381 5.57552 5.64489 5.73325 5.88765 5.93911 6.00074 6.12037 6.23572 6.31972 6.44385 6.55105 6.62396 6.72834 6.90799 6.98549 7.00223 7.06667 7.23842 7.31244 7.45570 7.84079 8.10001 8.46780 8.98743 9.76453 10.34522 11.19816 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.002902 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.130738 B = 9645.217595 C =10260.968815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.036 0.964 5 C 0.136 3.864 6 H 0.096 0.904 7 N -0.707 5.707 8 C 0.594 3.406 9 O -0.517 6.517 10 C -0.264 4.264 11 S 0.176 5.824 12 C 0.030 3.970 13 N -0.463 5.463 14 C 0.135 3.865 15 C 0.129 3.871 16 O -0.380 6.380 17 C 0.036 3.964 18 C -0.144 4.144 19 C 0.144 3.856 20 N -0.589 5.589 21 C -0.326 4.326 22 H 0.063 0.937 23 C -0.023 4.023 24 N -0.913 5.913 25 Si 1.065 2.935 26 H -0.294 1.294 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.029 0.971 30 H 0.092 0.908 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.396 0.604 35 H 0.208 0.792 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.040 0.960 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.031 0.969 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.025 0.271 -17.711 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.049 3.951 4 H 0.054 0.946 5 C 0.032 3.968 6 H 0.114 0.886 7 N -0.357 5.357 8 C 0.378 3.622 9 O -0.394 6.394 10 C -0.389 4.389 11 S 0.431 5.569 12 C -0.266 4.266 13 N -0.176 5.176 14 C -0.003 4.003 15 C 0.050 3.950 16 O -0.298 6.298 17 C -0.061 4.061 18 C -0.184 4.184 19 C 0.018 3.982 20 N -0.315 5.315 21 C -0.454 4.454 22 H 0.081 0.919 23 C -0.226 4.226 24 N -0.552 5.552 25 Si 0.895 3.105 26 H -0.222 1.222 27 H -0.219 1.219 28 H -0.212 1.212 29 H 0.048 0.952 30 H 0.111 0.889 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.230 0.770 35 H 0.224 0.776 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.048 0.952 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.959 0.731 -16.291 19.108 hybrid contribution 1.307 -0.698 -1.370 2.018 sum 11.266 0.033 -17.661 20.948 Atomic orbital electron populations 1.21888 0.95552 0.98909 1.04216 1.21891 0.97172 0.97478 0.99754 1.21193 0.89366 0.92461 0.92038 0.94600 1.22180 0.95865 0.99372 0.79426 0.88565 1.45967 1.13307 1.61860 1.14569 1.16618 0.82407 0.78757 0.84395 1.90793 1.53094 1.42681 1.52869 1.25731 0.99167 1.13434 1.00585 1.84049 1.17568 1.53002 1.02269 1.28699 0.91634 1.01096 1.05164 1.66034 1.29870 1.12993 1.08725 1.20240 0.93622 0.97317 0.89123 1.21025 0.93558 0.81459 0.98936 1.87884 1.53634 1.16559 1.71763 1.22728 0.90494 0.96839 0.96038 1.23204 0.99544 0.97628 0.97976 1.21553 0.85223 0.98702 0.92720 1.44509 1.01941 1.65327 1.19741 1.19602 0.83732 1.49418 0.92677 0.91903 1.25832 1.03950 1.00491 0.92321 1.70735 1.18997 1.29080 1.36404 0.83536 0.74925 0.76237 0.75794 1.22161 1.21882 1.21212 0.95171 0.88928 0.94294 0.94267 0.92473 0.76954 0.77553 0.91891 0.88800 0.94188 0.93438 0.89592 0.91584 0.91406 0.93038 0.95158 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.98 37.16 0.33 -2.53 16 2 C -0.12 -2.36 5.47 -26.73 -0.15 -2.51 16 3 C 0.16 3.06 3.00 -66.94 -0.20 2.85 16 4 H 0.04 0.69 7.69 -51.93 -0.40 0.29 16 5 C 0.14 2.38 2.76 -66.09 -0.18 2.19 16 6 H 0.10 1.82 7.40 -51.93 -0.38 1.44 16 7 N -0.71 -10.38 5.20 -53.33 -0.28 -10.65 16 8 C 0.59 9.07 7.78 -12.86 -0.10 8.97 16 9 O -0.52 -9.22 14.00 5.20 0.07 -9.15 16 10 C -0.26 -3.43 6.48 -37.10 -0.24 -3.67 16 11 S 0.18 1.56 22.35 -107.50 -2.40 -0.84 16 12 C 0.03 0.25 12.22 51.75 0.63 0.88 16 13 N -0.46 -5.52 10.50 -11.53 -0.12 -5.64 16 14 C 0.14 1.80 6.42 -83.89 -0.54 1.26 16 15 C 0.13 1.69 5.74 36.01 0.21 1.89 16 16 O -0.38 -5.36 10.69 -35.23 -0.38 -5.73 16 17 C 0.04 0.37 11.01 101.05 1.11 1.48 16 18 C -0.14 -2.63 6.77 -24.58 -0.17 -2.79 16 19 C 0.14 3.22 5.56 -2.52 -0.01 3.20 16 20 N -0.59 -13.83 2.92 -162.56 -0.47 -14.31 16 21 C -0.33 -8.48 7.22 -15.06 -0.11 -8.59 16 22 H 0.06 1.64 7.24 -52.48 -0.38 1.26 16 23 C -0.02 -0.62 5.17 -17.43 -0.09 -0.71 16 24 N -0.91 -26.51 13.05 55.49 0.72 -25.79 16 25 Si 1.07 24.48 29.99 -169.99 -5.10 19.38 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 2.11 5.52 -51.93 -0.29 1.82 16 31 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.40 5.00 7.50 -40.82 -0.31 4.70 16 35 H 0.21 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.30 6.01 -51.93 -0.31 0.99 16 38 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.03 0.74 6.73 -51.93 -0.35 0.39 16 45 H 0.27 7.92 6.20 -40.82 -0.25 7.66 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -32.02 376.50 -8.32 -40.34 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.54 Total: 4.78 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 0.50 Total: 1.94 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.15 Total: -56.39 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.30 Total: -14.88 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.10 Total: 19.38 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.40 Total: -0.84 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.02 -8.32 -40.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087754632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.012 kcal (2) G-P(sol) polarization free energy of solvation -32.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds