Wall clock time and date at job start Tue Mar 31 2020 22:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47119 * 2 1 4 4 C 1.50703 * 109.47275 * 119.99953 * 2 1 3 5 5 N 1.30940 * 122.90394 * 293.07645 * 4 2 1 6 6 C 1.29427 * 117.36250 * 180.30479 * 5 4 2 7 7 S 1.70952 * 110.39257 * 359.73124 * 6 5 4 8 8 C 1.35668 * 122.90210 * 112.88085 * 4 2 1 9 9 C 1.46679 * 126.13293 * 0.02562 * 8 4 2 10 10 O 1.21689 * 119.99703 * 5.75485 * 9 8 4 11 11 N 1.34771 * 120.00036 * 185.76087 * 9 8 4 12 12 C 1.46500 * 119.99874 * 180.02562 * 11 9 8 13 13 H 1.08987 * 109.46488 * 34.96827 * 12 11 9 14 14 C 1.53042 * 109.45562 * 274.99132 * 12 11 9 15 15 C 1.53199 * 109.30940 * 178.62802 * 14 12 11 16 16 N 1.46923 * 108.77317 * 54.63985 * 15 14 12 17 17 C 1.36938 * 120.63157 * 126.36791 * 16 15 14 18 18 H 1.08004 * 119.99611 * 329.79594 * 17 16 15 19 19 C 1.38805 * 120.00227 * 149.52064 * 17 16 15 20 20 N 1.31619 * 120.00164 * 348.32856 * 19 17 16 21 21 Si 1.86801 * 120.00135 * 168.32586 * 19 17 16 22 22 H 1.48501 * 109.47352 * 60.00007 * 21 19 17 23 23 H 1.48506 * 109.47378 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47159 * 299.99960 * 21 19 17 25 25 C 1.46925 * 118.74245 * 306.64140 * 16 15 14 26 26 C 1.52763 * 109.00821 * 53.30916 * 25 16 15 27 27 H 1.08998 * 109.35819 * 65.49880 * 26 25 16 28 28 O 1.42901 * 109.56695 * 185.55912 * 26 25 16 29 29 H 1.08996 * 109.47084 * 299.99848 * 1 2 3 30 30 H 1.09001 * 109.47359 * 60.00002 * 1 2 3 31 31 H 1.09006 * 109.47018 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47185 * 239.99468 * 2 1 3 33 33 H 1.08999 * 109.47197 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47007 * 299.99772 * 3 2 1 35 35 H 1.09001 * 109.47463 * 60.00221 * 3 2 1 36 36 H 1.08004 * 124.80738 * 179.76504 * 6 5 4 37 37 H 0.97001 * 120.00231 * 359.97438 * 11 9 8 38 38 H 1.08995 * 109.49802 * 58.68209 * 14 12 11 39 39 H 1.08996 * 109.50180 * 298.57943 * 14 12 11 40 40 H 1.08994 * 109.58530 * 294.85183 * 15 14 12 41 41 H 1.09000 * 109.58353 * 174.42648 * 15 14 12 42 42 H 0.97002 * 120.00577 * 180.02562 * 20 19 17 43 43 H 1.08994 * 109.59223 * 173.14478 * 25 16 15 44 44 H 1.09003 * 109.58151 * 293.57392 * 25 16 15 45 45 H 0.96701 * 113.99676 * 299.96619 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.8632 -0.2416 2.4413 6 6 2.3441 -0.9373 3.4211 7 16 3.1002 -2.3528 2.8319 8 6 2.6956 -1.8928 1.1796 9 6 3.0232 -2.6493 -0.0336 10 8 2.7872 -2.1745 -1.1289 11 7 3.5855 -3.8701 0.0647 12 6 3.9132 -4.6254 -1.1471 13 1 4.2326 -3.9366 -1.9290 14 6 2.6767 -5.3941 -1.6186 15 6 3.0134 -6.1553 -2.9048 16 7 4.1914 -6.9987 -2.6605 17 6 4.1569 -8.3407 -2.9307 18 1 3.2269 -8.8839 -2.8503 19 6 5.3159 -9.0016 -3.3134 20 7 6.3892 -8.3130 -3.6394 21 14 5.3525 -10.8686 -3.3659 22 1 4.3281 -11.3571 -4.3235 23 1 6.6961 -11.3253 -3.8035 24 1 5.0623 -11.4076 -2.0130 25 6 5.4052 -6.3760 -2.1150 26 6 5.0436 -5.6113 -0.8430 27 1 4.7159 -6.3159 -0.0786 28 8 6.1876 -4.8951 -0.3735 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6767 1.9563 0.8900 36 1 2.2769 -0.6627 4.4635 37 1 3.7739 -4.2485 0.9378 38 1 1.8647 -4.6934 -1.8126 39 1 2.3714 -6.1008 -0.8470 40 1 3.2312 -5.4457 -3.7029 41 1 2.1684 -6.7818 -3.1904 42 1 7.1990 -8.7749 -3.9072 43 1 6.1379 -7.1479 -1.8797 44 1 5.8220 -5.6847 -2.8475 45 1 6.9443 -5.4584 -0.1609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090633331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:46 Heat of formation + Delta-G solvation = -48.076528 kcal Electronic energy + Delta-G solvation = -27821.637414 eV Core-core repulsion = 23965.395744 eV Total energy + Delta-G solvation = -3856.241669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 10.33 seconds Orbital eigenvalues (eV) -41.68237 -40.67160 -39.28248 -36.90778 -36.09475 -35.61422 -34.04709 -31.96898 -30.82639 -30.41655 -28.04983 -27.41033 -26.52129 -24.41247 -23.72283 -23.12861 -22.29918 -21.39446 -20.38791 -18.97545 -18.84070 -18.13466 -17.91830 -17.26890 -16.79250 -16.43329 -16.23995 -15.67900 -15.58382 -15.38885 -15.24693 -15.16888 -14.96166 -14.63842 -14.40924 -13.88041 -13.81807 -13.57173 -13.38739 -13.34775 -13.01388 -13.00968 -12.64922 -12.59898 -12.18198 -12.14074 -12.12808 -12.03567 -11.89716 -11.87331 -11.36656 -11.06821 -10.97157 -10.64972 -10.60226 -10.59206 -10.16307 -9.86258 -8.72526 -7.90334 -5.42221 -0.78244 0.18163 0.56671 1.39325 1.49837 1.50300 1.57764 1.95988 2.06486 2.49119 3.08575 3.15505 3.27866 3.61585 3.66098 3.85018 3.93170 4.02179 4.03439 4.23360 4.29442 4.32405 4.39553 4.44331 4.51858 4.66223 4.78485 4.82721 4.86166 4.91111 4.93506 5.01446 5.03252 5.15642 5.17321 5.30292 5.31493 5.33146 5.53812 5.57719 5.62798 6.32805 6.35662 6.58785 6.80655 7.04217 7.10834 7.76662 8.30581 9.15919 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021495 B = 0.002749 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.291697 B =10181.313542 C =10700.648404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.151 3.849 5 N -0.491 5.491 6 C 0.049 3.951 7 S 0.208 5.792 8 C -0.328 4.328 9 C 0.594 3.406 10 O -0.557 6.557 11 N -0.699 5.699 12 C 0.171 3.829 13 H 0.062 0.938 14 C -0.124 4.124 15 C 0.143 3.857 16 N -0.604 5.604 17 C -0.268 4.268 18 H 0.072 0.928 19 C -0.046 4.046 20 N -0.935 5.935 21 Si 0.972 3.028 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.273 1.273 25 C 0.159 3.841 26 C 0.091 3.909 27 H 0.065 0.935 28 O -0.574 6.574 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.102 0.898 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.249 0.751 37 H 0.406 0.594 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.011 0.989 41 H 0.068 0.932 42 H 0.252 0.748 43 H 0.073 0.927 44 H -0.005 1.005 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.754 13.692 17.527 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.079 4.079 3 C -0.186 4.186 4 C 0.012 3.988 5 N -0.205 5.205 6 C -0.246 4.246 7 S 0.464 5.536 8 C -0.451 4.451 9 C 0.381 3.619 10 O -0.438 6.438 11 N -0.348 5.348 12 C 0.067 3.933 13 H 0.080 0.920 14 C -0.164 4.164 15 C 0.017 3.983 16 N -0.329 5.329 17 C -0.398 4.398 18 H 0.090 0.910 19 C -0.241 4.241 20 N -0.581 5.581 21 Si 0.799 3.201 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.199 1.199 25 C 0.032 3.968 26 C 0.030 3.970 27 H 0.083 0.917 28 O -0.381 6.381 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.119 0.881 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.264 0.736 37 H 0.242 0.758 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.029 0.971 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.013 0.987 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -7.878 14.083 17.303 23.660 hybrid contribution 0.645 -1.216 -0.785 1.585 sum -7.232 12.866 16.519 22.152 Atomic orbital electron populations 1.21667 0.92694 1.01392 1.02844 1.20396 0.97264 0.96817 0.93429 1.21666 1.00134 0.93974 1.02860 1.20793 0.93620 0.90430 0.93990 1.66099 1.22402 1.33502 0.98501 1.29523 0.96385 0.93832 1.04827 1.83798 1.51140 1.23818 0.94826 1.25409 1.16781 1.04153 0.98803 1.16996 0.76912 0.80732 0.87295 1.90693 1.55320 1.69264 1.28518 1.45790 1.61893 1.17037 1.10087 1.20746 0.93898 0.92027 0.86679 0.92012 1.22226 0.96372 0.98705 0.99066 1.21034 0.90338 0.92905 0.94042 1.44191 1.10350 1.04956 1.73428 1.19512 0.95929 0.84573 1.39756 0.91037 1.25924 0.97126 1.02488 0.98596 1.70131 1.03148 1.35659 1.49130 0.85286 0.76387 0.80127 0.78266 1.20358 1.22129 1.19869 1.21126 0.89860 0.94791 0.91060 1.22493 0.85697 0.91945 0.96826 0.91666 1.86396 1.25298 1.38893 1.87473 0.91811 0.90761 0.93925 0.88057 0.94023 0.90901 0.91591 0.73555 0.75772 0.90927 0.90758 0.97117 0.91395 0.93887 0.90877 0.98651 0.75756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.18 71.98 0.66 -2.07 16 2 C -0.06 -1.46 3.15 -11.54 -0.04 -1.50 16 3 C -0.13 -2.75 9.08 71.98 0.65 -2.09 16 4 C 0.15 3.76 5.40 42.10 0.23 3.99 16 5 N -0.49 -10.19 10.26 -190.39 -1.95 -12.14 16 6 C 0.05 0.66 12.22 130.60 1.60 2.26 16 7 S 0.21 3.27 22.37 -56.49 -1.26 2.00 16 8 C -0.33 -8.34 6.48 23.88 0.15 -8.18 16 9 C 0.59 18.74 7.73 86.45 0.67 19.41 16 10 O -0.56 -21.09 13.68 -4.31 -0.06 -21.15 16 11 N -0.70 -20.76 4.91 -446.38 -2.19 -22.96 16 12 C 0.17 6.09 2.12 45.02 0.10 6.19 16 13 H 0.06 2.60 7.57 -2.39 -0.02 2.58 16 14 C -0.12 -4.32 5.65 30.67 0.17 -4.15 16 15 C 0.14 5.98 6.52 86.37 0.56 6.55 16 16 N -0.60 -29.54 2.99 -699.94 -2.10 -31.64 16 17 C -0.27 -14.14 9.58 84.03 0.81 -13.33 16 18 H 0.07 3.64 7.86 -2.91 -0.02 3.62 16 19 C -0.05 -2.45 5.03 84.86 0.43 -2.02 16 20 N -0.94 -53.38 11.06 21.65 0.24 -53.14 16 21 Si 0.97 42.97 29.57 68.60 2.03 45.00 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.30 -13.20 7.11 99.48 0.71 -12.50 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 C 0.16 7.39 4.86 86.22 0.42 7.81 16 26 C 0.09 3.31 3.13 30.53 0.10 3.41 16 27 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 28 O -0.57 -18.77 13.16 -148.98 -1.96 -20.73 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.10 3.13 4.96 -2.39 -0.01 3.11 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.07 1.31 8.05 -2.39 -0.02 1.30 16 36 H 0.25 0.93 8.06 -2.91 -0.02 0.90 16 37 H 0.41 10.05 7.81 -92.71 -0.72 9.32 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 42 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 43 H 0.07 3.72 6.09 -2.39 -0.01 3.71 16 44 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H 0.39 10.05 9.08 -74.06 -0.67 9.37 16 Total: -1.00 -69.14 376.61 -1.12 -70.27 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: -0.37 Total: 28.22 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 6.50 Total: 16.25 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -6.00 Total: -119.87 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -2.02 Total: -41.87 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.26 Total: 2.00 kcal Total: -69.14 -1.12 -70.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090633331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.189 kcal (2) G-P(sol) polarization free energy of solvation -69.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.34 seconds