Wall clock time and date at job start Tue Mar 31 2020 22:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50694 * 109.47236 * 2 1 4 4 N 1.29437 * 124.80401 * 89.97497 * 3 2 1 5 5 C 1.30948 * 117.36181 * 179.72760 * 4 3 2 6 6 C 1.50705 * 122.90081 * 180.35265 * 5 4 3 7 7 C 1.35659 * 114.19054 * 0.52806 * 5 4 3 8 8 C 1.46686 * 126.12598 * 179.78186 * 7 5 4 9 9 O 1.21684 * 120.00129 * 359.72146 * 8 7 5 10 10 N 1.34781 * 119.99647 * 179.71359 * 8 7 5 11 11 C 1.46496 * 119.99650 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46024 * 35.03645 * 11 10 8 13 13 C 1.53035 * 109.45312 * 275.06540 * 11 10 8 14 14 C 1.53190 * 109.31682 * 178.62259 * 13 11 10 15 15 N 1.46930 * 108.77443 * 54.63800 * 14 13 11 16 16 C 1.36935 * 120.63477 * 126.41553 * 15 14 13 17 17 H 1.07994 * 119.99881 * 207.66453 * 16 15 14 18 18 C 1.38814 * 119.99679 * 27.66825 * 16 15 14 19 19 N 1.31612 * 120.00159 * 17.36602 * 18 16 15 20 20 Si 1.86799 * 119.99811 * 197.36895 * 18 16 15 21 21 H 1.48506 * 109.46967 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47265 * 119.99898 * 20 18 16 23 23 H 1.48499 * 109.47223 * 240.00412 * 20 18 16 24 24 C 1.46929 * 118.73628 * 306.39047 * 15 14 13 25 25 C 1.53043 * 109.45628 * 155.00280 * 11 10 8 26 26 H 1.09004 * 109.49738 * 61.39046 * 25 11 10 27 27 O 1.42891 * 109.50012 * 301.32677 * 25 11 10 28 28 S 1.70951 * 124.80883 * 270.00244 * 3 2 1 29 29 H 1.08990 * 109.47483 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46543 * 299.99915 * 1 2 3 31 31 H 1.09000 * 109.47126 * 59.99372 * 1 2 3 32 32 H 1.08993 * 109.46437 * 240.00094 * 2 1 3 33 33 H 1.08995 * 109.46800 * 120.00288 * 2 1 3 34 34 H 1.09005 * 109.46607 * 270.19532 * 6 5 4 35 35 H 1.08998 * 109.46996 * 30.19141 * 6 5 4 36 36 H 1.08999 * 109.47021 * 150.19461 * 6 5 4 37 37 H 0.96999 * 119.99974 * 0.02562 * 10 8 7 38 38 H 1.09007 * 109.49970 * 298.57756 * 13 11 10 39 39 H 1.08999 * 109.50179 * 58.66913 * 13 11 10 40 40 H 1.08997 * 109.59093 * 174.42294 * 14 13 11 41 41 H 1.08999 * 109.58846 * 294.85349 * 14 13 11 42 42 H 0.97003 * 119.99810 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.58499 * 293.82644 * 24 15 14 44 44 H 1.08996 * 109.58763 * 173.39653 * 24 15 14 45 45 H 0.96704 * 114.00236 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2782 2.1174 1.0628 5 6 2.7164 3.3397 0.8932 6 6 3.0491 4.2569 2.0419 7 6 2.8412 3.7103 -0.4058 8 6 3.3022 5.0150 -0.8925 9 8 3.6101 5.8858 -0.1002 10 7 3.3847 5.2493 -2.2172 11 6 3.8445 6.5526 -2.7032 12 1 4.6078 6.9425 -2.0299 13 6 2.6631 7.5241 -2.7520 14 6 3.1538 8.8951 -3.2277 15 7 3.8515 8.7288 -4.5100 16 6 3.4892 9.4701 -5.6028 17 1 3.6492 9.0801 -6.5971 18 6 2.9162 10.7230 -5.4326 19 7 3.0267 11.3459 -4.2784 20 14 1.9882 11.5249 -6.8415 21 1 2.0085 10.6255 -8.0230 22 1 0.5826 11.7722 -6.4313 23 1 2.6362 12.8146 -7.1907 24 6 4.9458 7.7523 -4.5973 25 6 4.4351 6.3940 -4.1062 26 1 3.6656 6.0269 -4.7854 27 8 5.5186 5.4634 -4.0652 28 16 2.3576 2.3408 -1.4036 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.1611 4.8225 2.3240 35 1 3.3886 3.6656 2.8923 36 1 3.8381 4.9457 1.7400 37 1 3.1390 4.5553 -2.8487 38 1 1.9101 7.1469 -3.4441 39 1 2.2283 7.6185 -1.7569 40 1 2.3022 9.5627 -3.3590 41 1 3.8389 9.3140 -2.4906 42 1 2.6260 12.2212 -4.1594 43 1 5.7770 8.0780 -3.9718 44 1 5.2767 7.6657 -5.6323 45 1 5.9415 5.3141 -4.9220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090641473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:05 Heat of formation + Delta-G solvation = -52.870665 kcal Electronic energy + Delta-G solvation = -27405.127332 eV Core-core repulsion = 23548.677773 eV Total energy + Delta-G solvation = -3856.449559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -41.60040 -40.70245 -39.32985 -37.00289 -35.89292 -35.24651 -33.85580 -32.13035 -31.69824 -30.39378 -29.22632 -26.97460 -26.43116 -24.32284 -23.79131 -22.89933 -22.48298 -21.45711 -20.44277 -19.03471 -18.93194 -18.06289 -17.94667 -17.19891 -16.80373 -16.63265 -16.05579 -15.70760 -15.64049 -15.48806 -15.21054 -14.97288 -14.80651 -14.52898 -14.43251 -13.99374 -13.90865 -13.67118 -13.48631 -13.30572 -12.99735 -12.94545 -12.76480 -12.57928 -12.42914 -12.39826 -12.12273 -12.07957 -12.06263 -11.89556 -11.43228 -11.19822 -11.06777 -10.76253 -10.64909 -10.57560 -10.16333 -9.77807 -8.78379 -7.91129 -5.38378 -0.86161 0.09083 0.47439 1.30917 1.47511 1.49652 1.59979 1.93988 2.02388 2.48630 2.91068 3.08648 3.26296 3.60068 3.67148 3.76560 3.84063 4.00254 4.02945 4.18546 4.22461 4.28436 4.35936 4.49958 4.53905 4.61283 4.65759 4.75923 4.81885 4.84551 4.89550 4.98777 4.99452 5.05685 5.10056 5.23593 5.32853 5.34326 5.39336 5.59290 5.65096 6.31766 6.33167 6.54456 6.86459 7.02635 7.08627 7.76871 8.29500 9.16464 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018857 B = 0.002600 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.541735 B =10766.755809 C =10888.332550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 C 0.070 3.930 4 N -0.499 5.499 5 C 0.143 3.857 6 C -0.087 4.087 7 C -0.330 4.330 8 C 0.593 3.407 9 O -0.559 6.559 10 N -0.699 5.699 11 C 0.171 3.829 12 H 0.062 0.938 13 C -0.130 4.130 14 C 0.181 3.819 15 N -0.604 5.604 16 C -0.263 4.263 17 H 0.078 0.922 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.261 1.261 22 H -0.292 1.292 23 H -0.295 1.295 24 C 0.118 3.882 25 C 0.102 3.898 26 H 0.074 0.926 27 O -0.571 6.571 28 S 0.212 5.788 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.407 0.593 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.064 0.936 41 H -0.007 1.007 42 H 0.251 0.749 43 H 0.013 0.987 44 H 0.078 0.922 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.434 -26.070 4.271 26.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.092 4.092 3 C -0.205 4.205 4 N -0.214 5.214 5 C 0.004 3.996 6 C -0.146 4.146 7 C -0.454 4.454 8 C 0.379 3.621 9 O -0.440 6.440 10 N -0.349 5.349 11 C 0.067 3.933 12 H 0.080 0.920 13 C -0.170 4.170 14 C 0.054 3.946 15 N -0.328 5.328 16 C -0.393 4.393 17 H 0.096 0.904 18 C -0.247 4.247 19 N -0.582 5.582 20 Si 0.798 3.202 21 H -0.185 1.185 22 H -0.218 1.218 23 H -0.222 1.222 24 C -0.008 4.008 25 C 0.041 3.959 26 H 0.092 0.908 27 O -0.378 6.378 28 S 0.470 5.530 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.243 0.757 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.011 0.989 42 H 0.060 0.940 43 H 0.031 0.969 44 H 0.096 0.904 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -3.560 -25.808 4.824 26.495 hybrid contribution -0.017 1.637 -0.393 1.684 sum -3.576 -24.171 4.431 24.833 Atomic orbital electron populations 1.21796 0.92374 1.04109 1.02199 1.20583 0.97438 0.84858 1.06355 1.28198 0.98576 1.02902 0.90820 1.66156 1.17229 1.05712 1.32347 1.20847 0.93840 0.91005 0.93920 1.20609 1.03188 0.96915 0.93891 1.25357 1.20573 1.01123 0.98340 1.16981 0.77072 0.85405 0.82604 1.90775 1.51264 1.46352 1.55635 1.45747 1.67032 1.16157 1.05945 1.20733 0.95545 0.82521 0.94551 0.92013 1.22341 0.97369 0.96599 1.00683 1.20544 0.95754 0.92739 0.85548 1.44272 1.35803 1.44024 1.08713 1.19594 1.36130 0.96332 0.87261 0.90443 1.25880 1.02927 0.96539 0.99342 1.70208 1.47428 1.14312 1.26260 0.85171 0.77756 0.77920 0.79348 1.18455 1.21848 1.22197 1.21688 0.90124 0.88968 1.00050 1.22321 0.89127 0.89860 0.94639 0.90786 1.86458 1.49799 1.63252 1.38333 1.83536 1.57498 1.01876 1.10056 0.88835 0.93328 0.92170 0.86585 0.87658 0.89932 0.89377 0.89966 0.75733 0.91176 0.92344 0.91773 0.98879 0.94029 0.96878 0.90381 0.75257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.90 71.98 0.71 -0.52 16 2 C -0.05 -0.49 6.51 29.85 0.19 -0.30 16 3 C 0.07 1.25 6.64 88.46 0.59 1.84 16 4 N -0.50 -11.92 10.50 -178.28 -1.87 -13.79 16 5 C 0.14 3.87 6.79 42.09 0.29 4.15 16 6 C -0.09 -2.26 9.69 71.24 0.69 -1.57 16 7 C -0.33 -9.02 6.48 23.88 0.15 -8.87 16 8 C 0.59 19.65 7.74 86.45 0.67 20.32 16 9 O -0.56 -22.39 13.93 -4.30 -0.06 -22.45 16 10 N -0.70 -21.25 4.91 -446.38 -2.19 -23.44 16 11 C 0.17 6.16 2.12 45.02 0.10 6.25 16 12 H 0.06 2.62 7.58 -2.39 -0.02 2.60 16 13 C -0.13 -5.16 5.65 30.67 0.17 -4.99 16 14 C 0.18 8.92 5.31 86.36 0.46 9.38 16 15 N -0.60 -29.47 3.00 -699.08 -2.09 -31.56 16 16 C -0.26 -13.87 9.59 84.03 0.81 -13.07 16 17 H 0.08 3.86 7.89 -2.91 -0.02 3.84 16 18 C -0.05 -2.81 4.91 84.86 0.42 -2.39 16 19 N -0.94 -55.30 11.19 21.65 0.24 -55.06 16 20 Si 0.97 43.67 29.59 68.60 2.03 45.70 16 21 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 C 0.12 4.66 6.14 86.36 0.53 5.19 16 25 C 0.10 3.25 3.14 30.67 0.10 3.34 16 26 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 27 O -0.57 -15.37 13.16 -148.98 -1.96 -17.33 16 28 S 0.21 3.83 22.31 -56.49 -1.26 2.57 16 29 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.08 2.47 6.02 -2.39 -0.01 2.46 16 37 H 0.41 10.05 7.79 -92.71 -0.72 9.32 16 38 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 39 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.06 3.54 6.04 -2.39 -0.01 3.53 16 41 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 42 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.01 0.56 8.14 -2.38 -0.02 0.55 16 44 H 0.08 2.78 7.93 -2.39 -0.02 2.76 16 45 H 0.40 6.88 9.08 -74.05 -0.67 6.20 16 Total: -1.00 -71.99 378.84 -1.66 -73.66 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.37 Total: 22.94 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 5.87 Total: 18.77 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -5.92 Total: -123.85 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -2.02 Total: -39.78 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.26 Total: 2.57 kcal Total: -71.99 -1.66 -73.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090641473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.785 kcal (2) G-P(sol) polarization free energy of solvation -71.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds