Wall clock time and date at job start Tue Mar 31 2020 23:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47449 * 2 1 4 4 C 1.50694 * 109.47315 * 120.00452 * 2 1 3 5 5 N 1.28647 * 124.72095 * 120.27828 * 4 2 1 6 6 C 1.33565 * 115.76651 * 180.15088 * 5 4 2 7 7 C 1.47268 * 123.14068 * 179.82503 * 6 5 4 8 8 O 1.21630 * 119.99681 * 179.73471 * 7 6 5 9 9 N 1.34773 * 120.00005 * 359.73969 * 7 6 5 10 10 C 1.46507 * 119.99802 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46080 * 324.97361 * 10 9 7 12 12 C 1.53044 * 109.44206 * 84.93970 * 10 9 7 13 13 C 1.52767 * 109.37623 * 181.25451 * 12 10 9 14 14 N 1.46930 * 109.00979 * 305.58634 * 13 12 10 15 15 C 1.36937 * 120.63089 * 233.58757 * 14 13 12 16 16 H 1.08002 * 119.99753 * 151.87886 * 15 14 13 17 17 C 1.38815 * 119.99927 * 331.60993 * 15 14 13 18 18 N 1.31612 * 119.99691 * 343.01870 * 17 15 14 19 19 Si 1.86798 * 119.99872 * 163.02004 * 17 15 14 20 20 H 1.48491 * 109.47459 * 94.07904 * 19 17 15 21 21 H 1.48504 * 109.46774 * 214.08172 * 19 17 15 22 22 H 1.48507 * 109.47233 * 334.07611 * 19 17 15 23 23 C 1.46928 * 118.73688 * 53.30761 * 14 13 12 24 24 C 1.53042 * 109.46064 * 204.99813 * 10 9 7 25 25 H 1.09000 * 109.49237 * 58.67714 * 24 10 9 26 26 O 1.42897 * 109.49549 * 298.58360 * 24 10 9 27 27 C 1.35207 * 113.71678 * 359.56722 * 6 5 4 28 28 S 1.70772 * 124.72027 * 299.97118 * 4 2 1 29 29 H 1.09003 * 109.47378 * 59.99199 * 1 2 3 30 30 H 1.08991 * 109.47458 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46931 * 299.99984 * 1 2 3 32 32 H 1.09006 * 109.46578 * 240.00367 * 2 1 3 33 33 H 1.09002 * 109.47310 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47010 * 300.00531 * 3 2 1 35 35 H 1.09002 * 109.47041 * 60.00084 * 3 2 1 36 36 H 0.97002 * 119.99920 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.49827 * 301.32296 * 12 10 9 38 38 H 1.08997 * 109.50021 * 61.43060 * 12 10 9 39 39 H 1.09006 * 109.50781 * 185.70739 * 13 12 10 40 40 H 1.09000 * 109.43434 * 65.42149 * 13 12 10 41 41 H 0.97000 * 119.99842 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.58035 * 66.43519 * 23 14 13 43 43 H 1.08997 * 109.58573 * 186.85607 * 23 14 13 44 44 H 0.96701 * 113.99622 * 180.16021 * 26 24 10 45 45 H 1.07992 * 125.58957 * 180.23183 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 7 2.7792 -1.7578 1.2180 6 6 3.1176 -2.2437 2.4153 7 6 3.9627 -3.4370 2.5903 8 8 4.2398 -3.8273 3.7085 9 7 4.4292 -4.0965 1.5115 10 6 5.2704 -5.2833 1.6856 11 1 5.9028 -5.1545 2.5640 12 6 4.3813 -6.5148 1.8736 13 6 5.2597 -7.7464 2.0862 14 7 6.2118 -7.8533 0.9722 15 6 6.3099 -9.0107 0.2469 16 1 6.6262 -8.9760 -0.7852 17 6 6.0081 -10.2290 0.8398 18 7 5.9556 -10.3275 2.1512 19 14 5.6767 -11.7286 -0.2236 20 1 6.9326 -12.5025 -0.3933 21 1 4.6533 -12.5829 0.4307 22 1 5.1805 -11.2924 -1.5536 23 6 7.0522 -6.6927 0.6473 24 6 6.1499 -5.4711 0.4473 25 1 6.7658 -4.5839 0.3007 26 8 5.3217 -5.6724 -0.6997 27 6 2.6164 -1.5344 3.4515 28 16 1.6955 -0.2329 2.8350 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 4.2080 -3.7854 0.6197 37 1 3.7387 -6.3704 2.7421 38 1 3.7664 -6.6585 0.9852 39 1 4.6341 -8.6384 2.1190 40 1 5.8051 -7.6453 3.0245 41 1 5.7451 -11.1790 2.5655 42 1 7.7467 -6.5040 1.4659 43 1 7.6089 -6.8898 -0.2689 44 1 5.8137 -5.8012 -1.5222 45 1 2.7724 -1.7540 4.4973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090650058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:50 Heat of formation + Delta-G solvation = -28.364995 kcal Electronic energy + Delta-G solvation = -27450.831715 eV Core-core repulsion = 23595.444802 eV Total energy + Delta-G solvation = -3855.386913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 17.11 seconds Orbital eigenvalues (eV) -40.60347 -39.15081 -37.81281 -35.84587 -34.88748 -34.26821 -31.80255 -30.36684 -29.88251 -28.77425 -27.65094 -26.22374 -24.89127 -23.31171 -22.24626 -21.60242 -20.84232 -19.86378 -19.34075 -18.37999 -17.18342 -16.66514 -16.02226 -15.89993 -15.54267 -15.39545 -14.76519 -14.58011 -14.30302 -14.27958 -14.00532 -13.68834 -13.47126 -13.26131 -13.14203 -12.77373 -12.61297 -12.29301 -12.11718 -12.04548 -11.94992 -11.67165 -11.38970 -11.19097 -11.00977 -10.81208 -10.68777 -10.27972 -10.22002 -10.07024 -10.00561 -9.94795 -9.87283 -9.59858 -9.28941 -9.11726 -8.62253 -8.37105 -6.63914 -5.76050 -3.18279 0.33293 0.98955 1.39803 1.89161 3.34949 3.39860 3.45062 3.46807 3.49436 3.70725 4.39096 4.50204 4.58655 4.62533 4.75093 4.96448 5.06291 5.12941 5.13329 5.29775 5.33096 5.37427 5.40414 5.43609 5.52822 5.63683 5.72809 5.75192 5.76324 5.79950 5.99634 6.27826 6.43144 6.52665 6.60885 6.67399 6.86068 6.95675 7.23354 7.43769 7.70122 7.81346 7.83559 8.14498 8.40331 8.47416 9.22498 9.85407 10.41999 11.32639 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020896 B = 0.002502 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.656552 B =11189.325754 C =11607.665797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.020 4.020 3 C -0.148 4.148 4 C 0.033 3.967 5 N -0.440 5.440 6 C 0.016 3.984 7 C 0.587 3.413 8 O -0.538 6.538 9 N -0.698 5.698 10 C 0.160 3.840 11 H 0.092 0.908 12 C -0.143 4.143 13 C 0.175 3.825 14 N -0.582 5.582 15 C -0.249 4.249 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.119 3.881 24 C 0.082 3.918 25 H 0.046 0.954 26 O -0.553 6.553 27 C -0.229 4.229 28 S 0.200 5.800 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.410 0.590 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.020 0.980 41 H 0.254 0.746 42 H 0.027 0.973 43 H 0.062 0.938 44 H 0.372 0.628 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.369 25.489 -3.033 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.042 4.042 3 C -0.206 4.206 4 C -0.247 4.247 5 N -0.155 5.155 6 C -0.118 4.118 7 C 0.369 3.631 8 O -0.415 6.415 9 N -0.347 5.347 10 C 0.057 3.943 11 H 0.110 0.890 12 C -0.183 4.183 13 C 0.048 3.952 14 N -0.304 5.304 15 C -0.379 4.379 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.204 1.204 23 C -0.009 4.009 24 C 0.021 3.979 25 H 0.063 0.937 26 O -0.358 6.358 27 C -0.371 4.371 28 S 0.457 5.543 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.246 0.754 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.080 0.920 44 H 0.218 0.782 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -10.035 25.632 -1.753 27.582 hybrid contribution 0.786 -1.618 -1.065 2.090 sum -9.248 24.014 -2.818 25.887 Atomic orbital electron populations 1.21942 0.93049 1.02955 1.02737 1.19841 0.96167 0.95392 0.92830 1.21941 1.01924 0.94005 1.02749 1.27190 1.00689 0.97141 0.99721 1.66948 1.12301 1.10102 1.26162 1.20564 1.03971 1.00100 0.87194 1.17097 0.79442 0.81423 0.85125 1.90823 1.58935 1.67590 1.24169 1.46037 1.50855 1.28697 1.09143 1.21098 0.92001 0.84295 0.96923 0.89045 1.22427 0.99092 0.95754 1.01071 1.20682 0.90744 0.94758 0.88979 1.43893 1.39949 1.09778 1.36767 1.19110 1.42489 0.83680 0.92596 0.91830 1.25044 1.01821 0.97474 0.95343 1.70037 1.51966 1.24661 1.07918 0.86287 0.77736 0.82874 0.79881 1.21536 1.21587 1.20433 1.21540 0.92146 0.87998 0.99191 1.22614 0.91885 0.97571 0.85849 0.93669 1.86463 1.36583 1.95270 1.17497 1.26617 1.03990 1.00381 1.06065 1.82681 1.45539 1.25822 1.00215 0.91006 0.91794 0.92211 0.87801 0.91887 0.91018 0.92210 0.75426 0.93001 0.91499 0.89214 0.96237 0.93617 0.95484 0.91992 0.78160 0.79347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.09 37.15 0.34 -0.49 16 2 C -0.02 -0.14 3.34 -91.78 -0.31 -0.45 16 3 C -0.15 -0.77 9.09 37.16 0.34 -0.44 16 4 C 0.03 0.32 6.00 -13.62 -0.08 0.24 16 5 N -0.44 -5.77 10.12 -8.51 -0.09 -5.86 16 6 C 0.02 0.24 6.70 -84.52 -0.57 -0.33 16 7 C 0.59 10.24 7.76 -12.59 -0.10 10.14 16 8 O -0.54 -10.86 16.38 5.25 0.09 -10.78 16 9 N -0.70 -11.91 5.05 -54.88 -0.28 -12.19 16 10 C 0.16 3.04 2.20 -67.88 -0.15 2.89 16 11 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 12 C -0.14 -3.10 5.50 -26.83 -0.15 -3.25 16 13 C 0.17 4.39 5.27 -3.93 -0.02 4.36 16 14 N -0.58 -14.64 2.94 -172.58 -0.51 -15.15 16 15 C -0.25 -6.84 9.58 -15.06 -0.14 -6.99 16 16 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 17 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 18 N -0.90 -26.65 11.22 55.49 0.62 -26.03 16 19 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.12 2.44 6.16 -3.71 -0.02 2.41 16 24 C 0.08 1.44 3.38 -26.62 -0.09 1.35 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 O -0.55 -9.56 12.09 -35.23 -0.43 -9.98 16 27 C -0.23 -2.70 10.62 29.65 0.31 -2.38 16 28 S 0.20 1.67 22.22 -107.50 -2.39 -0.72 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.29 7.92 -51.93 -0.41 -0.12 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.27 7.91 -51.93 -0.41 -0.14 16 36 H 0.41 6.60 7.77 -40.82 -0.32 6.28 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.52 7.61 -51.93 -0.40 1.13 16 39 H 0.09 2.52 6.08 -51.93 -0.32 2.20 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 44 H 0.37 5.08 9.08 45.56 0.41 5.50 16 45 H 0.19 2.06 8.03 -52.49 -0.42 1.64 16 LS Contribution 379.90 15.07 5.72 5.72 Total: -1.00 -33.40 379.90 -9.02 -42.42 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.02 Total: 8.57 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.72 Total: 7.05 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.25 Total: -59.22 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.34 Total: -20.76 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.39 Total: -0.72 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.40 -9.02 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090650058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.056 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.11 seconds