Wall clock time and date at job start Tue Mar 31 2020 23:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47449 * 2 1 4 4 C 1.50694 * 109.47315 * 120.00452 * 2 1 3 5 5 N 1.28647 * 124.72095 * 120.27828 * 4 2 1 6 6 C 1.33565 * 115.76651 * 180.15088 * 5 4 2 7 7 C 1.47268 * 123.14068 * 179.82503 * 6 5 4 8 8 O 1.21630 * 119.99681 * 179.73471 * 7 6 5 9 9 N 1.34773 * 120.00005 * 359.73969 * 7 6 5 10 10 C 1.46507 * 119.99802 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46080 * 324.97361 * 10 9 7 12 12 C 1.53044 * 109.44206 * 84.93970 * 10 9 7 13 13 C 1.52767 * 109.37623 * 181.25451 * 12 10 9 14 14 N 1.46930 * 109.00979 * 305.58634 * 13 12 10 15 15 C 1.36937 * 120.63089 * 233.58757 * 14 13 12 16 16 H 1.08002 * 119.99753 * 151.87886 * 15 14 13 17 17 C 1.38815 * 119.99927 * 331.60993 * 15 14 13 18 18 N 1.31612 * 119.99691 * 343.01870 * 17 15 14 19 19 Si 1.86798 * 119.99872 * 163.02004 * 17 15 14 20 20 H 1.48491 * 109.47459 * 94.07904 * 19 17 15 21 21 H 1.48504 * 109.46774 * 214.08172 * 19 17 15 22 22 H 1.48507 * 109.47233 * 334.07611 * 19 17 15 23 23 C 1.46928 * 118.73688 * 53.30761 * 14 13 12 24 24 C 1.53042 * 109.46064 * 204.99813 * 10 9 7 25 25 H 1.09000 * 109.49237 * 58.67714 * 24 10 9 26 26 O 1.42897 * 109.49549 * 298.58360 * 24 10 9 27 27 C 1.35207 * 113.71678 * 359.56722 * 6 5 4 28 28 S 1.70772 * 124.72027 * 299.97118 * 4 2 1 29 29 H 1.09003 * 109.47378 * 59.99199 * 1 2 3 30 30 H 1.08991 * 109.47458 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46931 * 299.99984 * 1 2 3 32 32 H 1.09006 * 109.46578 * 240.00367 * 2 1 3 33 33 H 1.09002 * 109.47310 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47010 * 300.00531 * 3 2 1 35 35 H 1.09002 * 109.47041 * 60.00084 * 3 2 1 36 36 H 0.97002 * 119.99920 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.49827 * 301.32296 * 12 10 9 38 38 H 1.08997 * 109.50021 * 61.43060 * 12 10 9 39 39 H 1.09006 * 109.50781 * 185.70739 * 13 12 10 40 40 H 1.09000 * 109.43434 * 65.42149 * 13 12 10 41 41 H 0.97000 * 119.99842 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.58035 * 66.43519 * 23 14 13 43 43 H 1.08997 * 109.58573 * 186.85607 * 23 14 13 44 44 H 0.96701 * 113.99622 * 180.16021 * 26 24 10 45 45 H 1.07992 * 125.58957 * 180.23183 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 7 2.7792 -1.7578 1.2180 6 6 3.1176 -2.2437 2.4153 7 6 3.9627 -3.4370 2.5903 8 8 4.2398 -3.8273 3.7085 9 7 4.4292 -4.0965 1.5115 10 6 5.2704 -5.2833 1.6856 11 1 5.9028 -5.1545 2.5640 12 6 4.3813 -6.5148 1.8736 13 6 5.2597 -7.7464 2.0862 14 7 6.2118 -7.8533 0.9722 15 6 6.3099 -9.0107 0.2469 16 1 6.6262 -8.9760 -0.7852 17 6 6.0081 -10.2290 0.8398 18 7 5.9556 -10.3275 2.1512 19 14 5.6767 -11.7286 -0.2236 20 1 6.9326 -12.5025 -0.3933 21 1 4.6533 -12.5829 0.4307 22 1 5.1805 -11.2924 -1.5536 23 6 7.0522 -6.6927 0.6473 24 6 6.1499 -5.4711 0.4473 25 1 6.7658 -4.5839 0.3007 26 8 5.3217 -5.6724 -0.6997 27 6 2.6164 -1.5344 3.4515 28 16 1.6955 -0.2329 2.8350 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 4.2080 -3.7854 0.6197 37 1 3.7387 -6.3704 2.7421 38 1 3.7664 -6.6585 0.9852 39 1 4.6341 -8.6384 2.1190 40 1 5.8051 -7.6453 3.0245 41 1 5.7451 -11.1790 2.5655 42 1 7.7467 -6.5040 1.4659 43 1 7.6089 -6.8898 -0.2689 44 1 5.8137 -5.8012 -1.5222 45 1 2.7724 -1.7540 4.4973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090650058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:29 Heat of formation + Delta-G solvation = -53.690355 kcal Electronic energy + Delta-G solvation = -27451.929905 eV Core-core repulsion = 23595.444802 eV Total energy + Delta-G solvation = -3856.485103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 5.41 seconds Orbital eigenvalues (eV) -41.71635 -40.44698 -39.27065 -36.62347 -36.44087 -35.77339 -33.70773 -31.86180 -31.11007 -30.43646 -28.04156 -27.60126 -26.34095 -24.55633 -23.92126 -23.16522 -21.64084 -21.24698 -20.72828 -19.43604 -18.98301 -17.87098 -17.51513 -17.09010 -16.76375 -16.52734 -16.43321 -15.90467 -15.56157 -15.43730 -15.29297 -15.14703 -14.94293 -14.54165 -14.25832 -13.84668 -13.75053 -13.69855 -13.11102 -13.02934 -12.98876 -12.79854 -12.70957 -12.61269 -12.46210 -12.15026 -12.12426 -12.11471 -11.90469 -11.88396 -11.55264 -11.21028 -10.90932 -10.85513 -10.68871 -10.52677 -10.18581 -9.82759 -8.68911 -7.87723 -5.32807 -0.54897 0.21508 0.56253 0.86072 1.45801 1.48386 1.58078 2.09554 2.23867 2.50588 2.84992 3.27509 3.35558 3.58254 3.67362 3.79728 3.99606 4.00390 4.09158 4.16839 4.17975 4.22693 4.31896 4.48182 4.66766 4.70060 4.78853 4.80286 4.83585 4.91518 4.92480 4.96457 4.96740 5.08176 5.16480 5.33333 5.36760 5.38694 5.43516 5.61446 5.66342 6.26189 6.36664 6.59213 6.95447 7.07562 7.12794 7.82022 8.35250 9.19713 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020896 B = 0.002502 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.656552 B =11189.325754 C =11607.665797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.022 4.022 3 C -0.145 4.145 4 C 0.022 3.978 5 N -0.467 5.467 6 C -0.012 4.012 7 C 0.583 3.417 8 O -0.575 6.575 9 N -0.690 5.690 10 C 0.165 3.835 11 H 0.078 0.922 12 C -0.125 4.125 13 C 0.185 3.815 14 N -0.598 5.598 15 C -0.254 4.254 16 H 0.074 0.926 17 C -0.056 4.056 18 N -0.939 5.939 19 Si 0.969 3.031 20 H -0.284 1.284 21 H -0.297 1.297 22 H -0.268 1.268 23 C 0.113 3.887 24 C 0.100 3.900 25 H 0.083 0.917 26 O -0.564 6.564 27 C -0.242 4.242 28 S 0.296 5.704 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.417 0.583 37 H 0.042 0.958 38 H 0.056 0.944 39 H 0.055 0.945 40 H -0.005 1.005 41 H 0.249 0.751 42 H 0.026 0.974 43 H 0.079 0.921 44 H 0.390 0.610 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.343 28.470 -4.912 30.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.044 4.044 3 C -0.204 4.204 4 C -0.258 4.258 5 N -0.183 5.183 6 C -0.147 4.147 7 C 0.368 3.632 8 O -0.455 6.455 9 N -0.340 5.340 10 C 0.061 3.939 11 H 0.096 0.904 12 C -0.165 4.165 13 C 0.058 3.942 14 N -0.321 5.321 15 C -0.384 4.384 16 H 0.091 0.909 17 C -0.251 4.251 18 N -0.585 5.585 19 Si 0.797 3.203 20 H -0.211 1.211 21 H -0.224 1.224 22 H -0.192 1.192 23 C -0.013 4.013 24 C 0.038 3.962 25 H 0.101 0.899 26 O -0.371 6.371 27 C -0.385 4.385 28 S 0.555 5.445 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.254 0.746 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.013 0.987 41 H 0.058 0.942 42 H 0.043 0.957 43 H 0.097 0.903 44 H 0.240 0.760 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -11.007 28.671 -3.692 30.932 hybrid contribution 1.037 -2.393 -0.467 2.650 sum -9.970 26.278 -4.159 28.411 Atomic orbital electron populations 1.21960 0.91741 1.02558 1.04259 1.20013 0.97106 0.96036 0.91222 1.21952 1.01377 0.92795 1.04228 1.27814 0.99565 0.96400 1.01997 1.66918 1.13926 1.11665 1.25771 1.20176 1.05660 1.00173 0.88734 1.17571 0.79105 0.82074 0.84424 1.90790 1.60406 1.68915 1.25409 1.45842 1.50628 1.27895 1.09594 1.20845 0.91670 0.83829 0.97580 0.90372 1.22131 0.98540 0.95800 1.00033 1.20360 0.90583 0.94781 0.88428 1.44083 1.40890 1.10719 1.36368 1.19513 1.41213 0.84483 0.93180 0.90864 1.25854 1.02461 1.00423 0.96388 1.70202 1.53709 1.24951 1.09670 0.85245 0.77273 0.79321 0.78489 1.21063 1.22373 1.19229 1.21788 0.92326 0.87464 0.99763 1.22357 0.91115 0.97331 0.85356 0.89933 1.86430 1.37202 1.95274 1.18201 1.26908 1.03998 1.01547 1.06075 1.82315 1.42424 1.22309 0.97489 0.89098 0.93136 0.91150 0.88552 0.92787 0.89148 0.91185 0.74608 0.93901 0.92474 0.92707 0.98718 0.94229 0.95653 0.90282 0.76033 0.79120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.09 71.98 0.65 -0.56 16 2 C -0.02 -0.25 3.34 -11.54 -0.04 -0.29 16 3 C -0.15 -1.07 9.09 71.98 0.65 -0.41 16 4 C 0.02 0.39 6.00 88.57 0.53 0.92 16 5 N -0.47 -11.82 10.12 -180.83 -1.83 -13.65 16 6 C -0.01 -0.36 6.70 40.56 0.27 -0.09 16 7 C 0.58 20.73 7.76 86.62 0.67 21.40 16 8 O -0.57 -24.06 16.38 -4.13 -0.07 -24.12 16 9 N -0.69 -23.57 5.05 -445.80 -2.25 -25.82 16 10 C 0.17 6.32 2.20 45.02 0.10 6.42 16 11 H 0.08 3.23 7.58 -2.39 -0.02 3.21 16 12 C -0.12 -5.59 5.50 30.53 0.17 -5.43 16 13 C 0.19 9.74 5.27 86.22 0.45 10.20 16 14 N -0.60 -30.51 2.94 -699.91 -2.06 -32.56 16 15 C -0.25 -13.99 9.58 84.03 0.80 -13.19 16 16 H 0.07 3.83 7.89 -2.91 -0.02 3.81 16 17 C -0.06 -3.22 4.91 84.86 0.42 -2.80 16 18 N -0.94 -57.58 11.22 21.65 0.24 -57.33 16 19 Si 0.97 45.80 29.59 68.60 2.03 47.83 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 C 0.11 4.53 6.16 86.36 0.53 5.06 16 24 C 0.10 3.33 3.38 30.67 0.10 3.44 16 25 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 26 O -0.56 -18.36 12.09 -148.98 -1.80 -20.16 16 27 C -0.24 -5.49 10.62 67.12 0.71 -4.78 16 28 S 0.30 4.12 22.22 -56.49 -1.26 2.86 16 29 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.42 7.92 -2.39 -0.02 0.40 16 32 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.07 0.37 7.91 -2.39 -0.02 0.35 16 36 H 0.42 13.15 7.77 -92.71 -0.72 12.43 16 37 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 2.65 7.61 -2.39 -0.02 2.64 16 39 H 0.05 3.25 6.08 -2.38 -0.01 3.23 16 40 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 41 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 42 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 2.88 7.93 -2.39 -0.02 2.86 16 44 H 0.39 9.57 9.08 -74.06 -0.67 8.90 16 45 H 0.19 4.09 8.03 -2.91 -0.02 4.07 16 Total: -1.00 -75.17 379.90 -1.32 -76.49 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.37 Total: 26.55 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 6.04 Total: 19.90 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -5.89 Total: -129.36 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -1.87 Total: -44.28 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.26 Total: 2.86 kcal Total: -75.17 -1.32 -76.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090650058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.803 kcal (2) G-P(sol) polarization free energy of solvation -75.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.41 seconds