Wall clock time and date at job start Tue Mar 31 2020 23:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46848 * 2 1 4 4 C 1.50702 * 109.47300 * 119.99494 * 2 1 3 5 5 N 1.28644 * 124.71613 * 120.29663 * 4 2 1 6 6 C 1.33558 * 115.76368 * 180.19007 * 5 4 2 7 7 C 1.47274 * 123.14079 * 179.82517 * 6 5 4 8 8 O 1.21632 * 120.00107 * 179.72837 * 7 6 5 9 9 N 1.34777 * 120.00014 * 359.73425 * 7 6 5 10 10 C 1.46500 * 119.99761 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46188 * 35.02880 * 10 9 7 12 12 C 1.53040 * 109.46005 * 275.06726 * 10 9 7 13 13 C 1.53184 * 109.31256 * 178.61836 * 12 10 9 14 14 N 1.46926 * 108.78005 * 54.63305 * 13 12 10 15 15 C 1.36935 * 120.63351 * 126.66526 * 14 13 12 16 16 H 1.08004 * 119.99779 * 332.38755 * 15 14 13 17 17 C 1.38810 * 120.00179 * 152.39135 * 15 14 13 18 18 N 1.31621 * 120.00185 * 159.35843 * 17 15 14 19 19 Si 1.86800 * 120.00001 * 339.35409 * 17 15 14 20 20 H 1.48503 * 109.47169 * 92.76675 * 19 17 15 21 21 H 1.48491 * 109.47537 * 212.76912 * 19 17 15 22 22 H 1.48507 * 109.47041 * 332.77061 * 19 17 15 23 23 C 1.46928 * 118.73861 * 306.39541 * 14 13 12 24 24 C 1.53045 * 109.45590 * 155.00153 * 10 9 7 25 25 H 1.08995 * 109.50264 * 61.43091 * 24 10 9 26 26 O 1.42903 * 109.49715 * 301.33395 * 24 10 9 27 27 C 1.35203 * 113.72091 * 359.55883 * 6 5 4 28 28 S 1.70766 * 124.72283 * 300.03042 * 4 2 1 29 29 H 1.08998 * 109.47089 * 300.00158 * 1 2 3 30 30 H 1.08996 * 109.47168 * 59.99991 * 1 2 3 31 31 H 1.09003 * 109.47021 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47089 * 239.99842 * 2 1 3 33 33 H 1.08997 * 109.47052 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46565 * 299.99988 * 3 2 1 35 35 H 1.09000 * 109.47003 * 59.99694 * 3 2 1 36 36 H 0.96998 * 119.99554 * 0.02562 * 9 7 6 37 37 H 1.09003 * 109.49730 * 298.56624 * 12 10 9 38 38 H 1.08997 * 109.49911 * 58.63197 * 12 10 9 39 39 H 1.09001 * 109.58902 * 294.84565 * 13 12 10 40 40 H 1.09001 * 109.59110 * 174.41927 * 13 12 10 41 41 H 0.96997 * 120.00089 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.58868 * 173.39279 * 23 14 13 43 43 H 1.09005 * 109.58506 * 293.67734 * 23 14 13 44 44 H 0.96696 * 114.00194 * 180.16517 * 26 24 10 45 45 H 1.08002 * 125.59234 * 180.26451 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 2.7796 -1.7574 1.2183 6 6 3.1173 -2.2436 2.4155 7 6 3.9626 -3.4368 2.5907 8 8 4.2391 -3.8275 3.7089 9 7 4.4299 -4.0959 1.5119 10 6 5.2713 -5.2825 1.6863 11 1 4.9407 -5.8362 2.5650 12 6 6.7278 -4.8518 1.8735 13 6 7.5993 -6.0928 2.0899 14 7 7.3839 -7.0227 0.9729 15 6 8.4435 -7.5038 0.2513 16 1 9.3490 -6.9210 0.1676 17 6 8.3540 -8.7405 -0.3728 18 7 9.1599 -9.0337 -1.3713 19 14 7.0898 -9.9886 0.2045 20 1 5.8464 -9.8393 -0.5936 21 1 7.6307 -11.3600 0.0262 22 1 6.7870 -9.7588 1.6401 23 6 6.0103 -7.4312 0.6487 24 6 5.1566 -6.1751 0.4483 25 1 5.5104 -5.6305 -0.4270 26 8 3.7914 -6.5518 0.2568 27 6 2.6154 -1.5349 3.4517 28 16 1.6944 -0.2334 2.8350 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 4.2098 -3.7841 0.6202 37 1 7.0669 -4.3196 0.9847 38 1 6.8048 -4.1967 2.7413 39 1 7.3210 -6.5760 3.0264 40 1 8.6489 -5.8008 2.1249 41 1 9.0975 -9.8980 -1.8071 42 1 6.0114 -8.0222 -0.2672 43 1 5.6032 -8.0257 1.4666 44 1 3.6446 -7.1216 -0.5105 45 1 2.7712 -1.7545 4.4976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090650063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:38 Heat of formation + Delta-G solvation = -25.468175 kcal Electronic energy + Delta-G solvation = -27458.561466 eV Core-core repulsion = 23603.300169 eV Total energy + Delta-G solvation = -3855.261298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 4.99 seconds Orbital eigenvalues (eV) -40.67728 -39.29247 -37.96737 -35.88246 -35.49766 -34.48009 -32.19140 -30.48936 -30.05234 -29.17695 -27.67482 -26.33832 -24.92086 -23.40939 -22.81714 -21.56917 -20.92504 -20.01588 -19.62711 -18.51334 -17.17324 -16.89725 -16.57262 -16.10908 -15.86766 -15.50415 -15.01352 -14.66879 -14.39017 -14.33566 -14.12836 -13.76796 -13.49863 -13.42757 -13.19846 -12.85444 -12.68006 -12.52060 -12.34430 -12.26833 -12.13993 -12.10496 -11.69622 -11.42872 -11.38168 -11.00645 -10.89076 -10.51668 -10.36154 -10.17013 -10.08173 -9.91902 -9.76620 -9.63401 -9.51425 -9.18199 -8.77193 -8.68450 -7.07865 -6.01817 -3.38994 0.28322 0.94311 1.35108 1.83172 3.24635 3.25969 3.36837 3.44868 3.48711 3.63828 4.32344 4.37396 4.46514 4.55230 4.59802 4.90690 4.91682 5.00392 5.07864 5.10663 5.20435 5.29249 5.30879 5.34564 5.45807 5.49850 5.62039 5.67646 5.72750 5.73408 5.77880 5.81781 6.03802 6.24888 6.27508 6.40247 6.50790 6.57443 6.69400 6.82444 7.17108 7.69880 7.80148 7.96231 8.26127 8.29327 8.85173 9.63685 9.99919 11.13785 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.002605 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.384325 B =10746.419282 C =11123.685946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 C -0.148 4.148 4 C 0.033 3.967 5 N -0.441 5.441 6 C 0.017 3.983 7 C 0.591 3.409 8 O -0.539 6.539 9 N -0.694 5.694 10 C 0.161 3.839 11 H 0.090 0.910 12 C -0.141 4.141 13 C 0.149 3.851 14 N -0.602 5.602 15 C -0.262 4.262 16 H 0.089 0.911 17 C 0.024 3.976 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.289 1.289 21 H -0.301 1.301 22 H -0.269 1.269 23 C 0.102 3.898 24 C 0.081 3.919 25 H 0.064 0.936 26 O -0.570 6.570 27 C -0.229 4.229 28 S 0.203 5.797 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.408 0.592 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.029 0.971 40 H 0.071 0.929 41 H 0.264 0.736 42 H 0.079 0.921 43 H 0.037 0.963 44 H 0.377 0.623 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.577 21.429 3.943 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.043 4.043 3 C -0.207 4.207 4 C -0.247 4.247 5 N -0.156 5.156 6 C -0.118 4.118 7 C 0.374 3.626 8 O -0.417 6.417 9 N -0.343 5.343 10 C 0.057 3.943 11 H 0.108 0.892 12 C -0.182 4.182 13 C 0.022 3.978 14 N -0.327 5.327 15 C -0.390 4.390 16 H 0.107 0.893 17 C -0.175 4.175 18 N -0.548 5.548 19 Si 0.711 3.289 20 H -0.217 1.217 21 H -0.229 1.229 22 H -0.194 1.194 23 C -0.025 4.025 24 C 0.020 3.980 25 H 0.082 0.918 26 O -0.375 6.375 27 C -0.371 4.371 28 S 0.460 5.540 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.243 0.757 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.224 0.776 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -18.741 21.918 5.090 29.284 hybrid contribution -0.081 -1.936 -0.568 2.020 sum -18.823 19.982 4.522 27.821 Atomic orbital electron populations 1.21943 0.93048 1.02905 1.02767 1.19851 0.96151 0.95449 0.92801 1.21945 1.02000 0.93947 1.02770 1.27195 1.00613 0.97098 0.99762 1.66937 1.12309 1.10185 1.26139 1.20510 1.03987 1.00082 0.87241 1.17045 0.79025 0.81529 0.84981 1.90810 1.59451 1.67223 1.24172 1.45867 1.50573 1.28739 1.09131 1.21026 0.90430 0.84325 0.98546 0.89169 1.22432 0.93629 1.00029 1.02069 1.20967 0.98124 0.88685 0.89996 1.44340 1.01083 1.53076 1.34189 1.18939 0.95119 1.00002 1.24973 0.89343 1.25304 0.97442 0.97199 0.97587 1.69833 1.40471 1.23057 1.21429 0.86993 0.80513 0.81429 0.79928 1.21709 1.22940 1.19427 1.22032 0.85758 0.94416 1.00298 1.22772 0.81716 0.96727 0.96804 0.91826 1.86451 1.26430 1.71846 1.52738 1.26613 1.04043 1.00399 1.06037 1.82696 1.45399 1.25752 1.00166 0.92216 0.90973 0.91837 0.87786 0.91824 0.90980 0.92208 0.75716 0.91418 0.91313 0.95305 0.91067 0.92654 0.90307 0.94564 0.77617 0.79363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.09 37.16 0.34 -0.43 16 2 C -0.02 -0.14 3.34 -91.77 -0.31 -0.45 16 3 C -0.15 -0.76 9.09 37.16 0.34 -0.43 16 4 C 0.03 0.32 6.00 -13.61 -0.08 0.24 16 5 N -0.44 -5.56 10.12 -8.51 -0.09 -5.65 16 6 C 0.02 0.23 6.70 -84.52 -0.57 -0.34 16 7 C 0.59 9.84 7.76 -12.59 -0.10 9.75 16 8 O -0.54 -10.32 16.37 5.25 0.09 -10.24 16 9 N -0.69 -11.26 4.91 -54.89 -0.27 -11.53 16 10 C 0.16 2.88 2.12 -67.89 -0.14 2.74 16 11 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 12 C -0.14 -2.50 5.65 -26.62 -0.15 -2.66 16 13 C 0.15 2.99 6.51 -3.71 -0.02 2.96 16 14 N -0.60 -14.18 2.77 -172.32 -0.48 -14.66 16 15 C -0.26 -7.21 10.04 -15.06 -0.15 -7.36 16 16 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 17 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 18 N -0.91 -27.31 13.97 55.49 0.78 -26.53 16 19 Si 0.88 22.12 24.34 -169.99 -4.14 17.98 16 20 H -0.29 -6.88 6.62 56.52 0.37 -6.50 16 21 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 22 H -0.27 -6.76 6.64 56.52 0.38 -6.38 16 23 C 0.10 2.21 3.83 -3.71 -0.01 2.19 16 24 C 0.08 1.48 3.14 -26.61 -0.08 1.39 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 26 O -0.57 -9.52 13.16 -35.23 -0.46 -9.99 16 27 C -0.23 -2.57 10.62 29.65 0.31 -2.26 16 28 S 0.20 1.60 22.22 -107.50 -2.39 -0.79 16 29 H 0.06 0.27 7.91 -51.93 -0.41 -0.14 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.26 7.92 -51.93 -0.41 -0.15 16 36 H 0.41 6.15 8.12 -40.82 -0.33 5.82 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.40 7.93 -51.93 -0.41 0.98 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.08 1.81 4.51 -51.93 -0.23 1.58 16 43 H 0.04 0.81 7.05 -51.93 -0.37 0.44 16 44 H 0.38 4.95 9.08 45.56 0.41 5.36 16 45 H 0.19 1.94 8.03 -52.49 -0.42 1.52 16 LS Contribution 375.12 15.07 5.65 5.65 Total: -1.00 -33.46 375.12 -8.01 -41.47 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.98 Total: 8.33 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -0.72 Total: 5.94 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.06 Total: -58.37 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.38 Total: -20.23 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.39 Total: -0.79 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.46 -8.01 -41.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090650063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.005 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.99 seconds