Wall clock time and date at job start Tue Mar 31 2020 23:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46848 * 2 1 4 4 C 1.50702 * 109.47300 * 119.99494 * 2 1 3 5 5 N 1.28644 * 124.71613 * 120.29663 * 4 2 1 6 6 C 1.33558 * 115.76368 * 180.19007 * 5 4 2 7 7 C 1.47274 * 123.14079 * 179.82517 * 6 5 4 8 8 O 1.21632 * 120.00107 * 179.72837 * 7 6 5 9 9 N 1.34777 * 120.00014 * 359.73425 * 7 6 5 10 10 C 1.46500 * 119.99761 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46188 * 35.02880 * 10 9 7 12 12 C 1.53040 * 109.46005 * 275.06726 * 10 9 7 13 13 C 1.53184 * 109.31256 * 178.61836 * 12 10 9 14 14 N 1.46926 * 108.78005 * 54.63305 * 13 12 10 15 15 C 1.36935 * 120.63351 * 126.66526 * 14 13 12 16 16 H 1.08004 * 119.99779 * 332.38755 * 15 14 13 17 17 C 1.38810 * 120.00179 * 152.39135 * 15 14 13 18 18 N 1.31621 * 120.00185 * 159.35843 * 17 15 14 19 19 Si 1.86800 * 120.00001 * 339.35409 * 17 15 14 20 20 H 1.48503 * 109.47169 * 92.76675 * 19 17 15 21 21 H 1.48491 * 109.47537 * 212.76912 * 19 17 15 22 22 H 1.48507 * 109.47041 * 332.77061 * 19 17 15 23 23 C 1.46928 * 118.73861 * 306.39541 * 14 13 12 24 24 C 1.53045 * 109.45590 * 155.00153 * 10 9 7 25 25 H 1.08995 * 109.50264 * 61.43091 * 24 10 9 26 26 O 1.42903 * 109.49715 * 301.33395 * 24 10 9 27 27 C 1.35203 * 113.72091 * 359.55883 * 6 5 4 28 28 S 1.70766 * 124.72283 * 300.03042 * 4 2 1 29 29 H 1.08998 * 109.47089 * 300.00158 * 1 2 3 30 30 H 1.08996 * 109.47168 * 59.99991 * 1 2 3 31 31 H 1.09003 * 109.47021 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47089 * 239.99842 * 2 1 3 33 33 H 1.08997 * 109.47052 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46565 * 299.99988 * 3 2 1 35 35 H 1.09000 * 109.47003 * 59.99694 * 3 2 1 36 36 H 0.96998 * 119.99554 * 0.02562 * 9 7 6 37 37 H 1.09003 * 109.49730 * 298.56624 * 12 10 9 38 38 H 1.08997 * 109.49911 * 58.63197 * 12 10 9 39 39 H 1.09001 * 109.58902 * 294.84565 * 13 12 10 40 40 H 1.09001 * 109.59110 * 174.41927 * 13 12 10 41 41 H 0.96997 * 120.00089 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.58868 * 173.39279 * 23 14 13 43 43 H 1.09005 * 109.58506 * 293.67734 * 23 14 13 44 44 H 0.96696 * 114.00194 * 180.16517 * 26 24 10 45 45 H 1.08002 * 125.59234 * 180.26451 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 2.7796 -1.7574 1.2183 6 6 3.1173 -2.2436 2.4155 7 6 3.9626 -3.4368 2.5907 8 8 4.2391 -3.8275 3.7089 9 7 4.4299 -4.0959 1.5119 10 6 5.2713 -5.2825 1.6863 11 1 4.9407 -5.8362 2.5650 12 6 6.7278 -4.8518 1.8735 13 6 7.5993 -6.0928 2.0899 14 7 7.3839 -7.0227 0.9729 15 6 8.4435 -7.5038 0.2513 16 1 9.3490 -6.9210 0.1676 17 6 8.3540 -8.7405 -0.3728 18 7 9.1599 -9.0337 -1.3713 19 14 7.0898 -9.9886 0.2045 20 1 5.8464 -9.8393 -0.5936 21 1 7.6307 -11.3600 0.0262 22 1 6.7870 -9.7588 1.6401 23 6 6.0103 -7.4312 0.6487 24 6 5.1566 -6.1751 0.4483 25 1 5.5104 -5.6305 -0.4270 26 8 3.7914 -6.5518 0.2568 27 6 2.6154 -1.5349 3.4517 28 16 1.6944 -0.2334 2.8350 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 4.2098 -3.7841 0.6202 37 1 7.0669 -4.3196 0.9847 38 1 6.8048 -4.1967 2.7413 39 1 7.3210 -6.5760 3.0264 40 1 8.6489 -5.8008 2.1249 41 1 9.0975 -9.8980 -1.8071 42 1 6.0114 -8.0222 -0.2672 43 1 5.6032 -8.0257 1.4666 44 1 3.6446 -7.1216 -0.5105 45 1 2.7712 -1.7545 4.4976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090650063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:25 Heat of formation + Delta-G solvation = -51.919998 kcal Electronic energy + Delta-G solvation = -27459.708504 eV Core-core repulsion = 23603.300169 eV Total energy + Delta-G solvation = -3856.408335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 17.01 seconds Orbital eigenvalues (eV) -41.73471 -40.53356 -39.34888 -37.08724 -36.44907 -35.95810 -34.11655 -32.01696 -31.12176 -30.73184 -28.04922 -27.64394 -26.29547 -24.83024 -24.10807 -23.12677 -21.67192 -21.41710 -20.87949 -19.51561 -18.91751 -18.35959 -17.96110 -17.31112 -16.90331 -16.58060 -16.42275 -16.14533 -15.60611 -15.42515 -15.23286 -15.07548 -14.98844 -14.66660 -14.34358 -14.20997 -14.05094 -13.84362 -13.65722 -13.15425 -13.04845 -13.02078 -12.74738 -12.63586 -12.53961 -12.39907 -12.14764 -12.05737 -11.89259 -11.76225 -11.51882 -11.28776 -11.15521 -10.86154 -10.71556 -10.68734 -10.25965 -9.84306 -9.05466 -8.20816 -5.55065 -0.54556 0.21662 0.56432 0.86022 1.24458 1.40140 1.48289 2.05895 2.23519 2.36211 2.81261 2.87181 3.10223 3.28766 3.62405 3.72136 3.93145 3.98770 4.00766 4.08694 4.16049 4.17941 4.18992 4.29351 4.45742 4.51727 4.63774 4.70042 4.78053 4.80975 4.83558 4.87209 4.91685 4.95620 4.96294 5.15793 5.24567 5.32272 5.33808 5.35892 5.79561 6.08658 6.23952 6.56144 6.67248 6.84103 7.04495 7.53144 7.93260 8.98482 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.002605 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.384325 B =10746.419282 C =11123.685946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.022 4.022 3 C -0.146 4.146 4 C 0.021 3.979 5 N -0.469 5.469 6 C -0.013 4.013 7 C 0.588 3.412 8 O -0.572 6.572 9 N -0.689 5.689 10 C 0.166 3.834 11 H 0.072 0.928 12 C -0.127 4.127 13 C 0.146 3.854 14 N -0.613 5.613 15 C -0.252 4.252 16 H 0.060 0.940 17 C -0.028 4.028 18 N -0.951 5.951 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.309 1.309 22 H -0.269 1.269 23 C 0.099 3.901 24 C 0.098 3.902 25 H 0.068 0.932 26 O -0.570 6.570 27 C -0.241 4.241 28 S 0.295 5.705 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.414 0.586 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.264 0.736 42 H 0.067 0.933 43 H 0.034 0.966 44 H 0.394 0.606 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.494 23.666 4.320 32.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.044 4.044 3 C -0.204 4.204 4 C -0.258 4.258 5 N -0.184 5.184 6 C -0.148 4.148 7 C 0.373 3.627 8 O -0.452 6.452 9 N -0.338 5.338 10 C 0.061 3.939 11 H 0.090 0.910 12 C -0.167 4.167 13 C 0.020 3.980 14 N -0.339 5.339 15 C -0.381 4.381 16 H 0.078 0.922 17 C -0.224 4.224 18 N -0.596 5.596 19 Si 0.769 3.231 20 H -0.193 1.193 21 H -0.238 1.238 22 H -0.194 1.194 23 C -0.027 4.027 24 C 0.036 3.964 25 H 0.086 0.914 26 O -0.377 6.377 27 C -0.384 4.384 28 S 0.554 5.446 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.250 0.750 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.052 0.948 44 H 0.244 0.756 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -21.716 24.197 5.459 32.967 hybrid contribution 0.769 -2.467 -0.645 2.664 sum -20.946 21.730 4.814 30.563 Atomic orbital electron populations 1.21955 0.91628 1.02622 1.04228 1.20009 0.97190 0.95948 0.91271 1.21957 1.01314 0.92941 1.04221 1.27782 0.99616 0.96436 1.01999 1.66911 1.13857 1.11724 1.25902 1.20179 1.05660 1.00246 0.88666 1.17465 0.78780 0.82085 0.84336 1.90776 1.60827 1.68411 1.25217 1.45719 1.50333 1.28143 1.09588 1.20801 0.90588 0.84929 0.97565 0.91010 1.22246 0.93167 0.98779 1.02492 1.21084 0.98850 0.88967 0.89062 1.44421 1.01055 1.53463 1.34971 1.18874 0.95304 0.99613 1.24311 0.92215 1.25858 0.99854 0.98866 0.97795 1.69945 1.43078 1.23548 1.23031 0.86032 0.79208 0.78408 0.79500 1.19288 1.23790 1.19441 1.22045 0.85238 0.95939 0.99463 1.22400 0.81914 0.95023 0.97029 0.91439 1.86439 1.25005 1.72320 1.53955 1.26908 1.03973 1.01435 1.06105 1.82343 1.42409 1.22423 0.97446 0.91135 0.89197 0.92974 0.88643 0.92936 0.89223 0.91125 0.74992 0.91237 0.90455 0.94835 0.91052 0.92728 0.91479 0.94823 0.75606 0.78961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.09 71.98 0.65 -0.44 16 2 C -0.02 -0.25 3.34 -11.54 -0.04 -0.29 16 3 C -0.15 -1.09 9.09 71.98 0.65 -0.44 16 4 C 0.02 0.36 6.00 88.58 0.53 0.89 16 5 N -0.47 -11.34 10.12 -180.83 -1.83 -13.17 16 6 C -0.01 -0.34 6.70 40.56 0.27 -0.07 16 7 C 0.59 19.48 7.76 86.62 0.67 20.15 16 8 O -0.57 -22.01 16.37 -4.13 -0.07 -22.08 16 9 N -0.69 -21.99 4.91 -445.80 -2.19 -24.18 16 10 C 0.17 5.85 2.12 45.02 0.10 5.94 16 11 H 0.07 2.83 7.58 -2.39 -0.02 2.81 16 12 C -0.13 -4.43 5.65 30.67 0.17 -4.26 16 13 C 0.15 5.84 6.51 86.36 0.56 6.40 16 14 N -0.61 -28.87 2.77 -699.09 -1.94 -30.81 16 15 C -0.25 -14.07 10.04 84.03 0.84 -13.23 16 16 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 17 C -0.03 -1.63 5.23 84.86 0.44 -1.18 16 18 N -0.95 -58.62 13.97 21.65 0.30 -58.32 16 19 Si 0.94 45.92 24.34 68.60 1.67 47.59 16 20 H -0.27 -11.93 6.62 99.48 0.66 -11.27 16 21 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 22 H -0.27 -13.04 6.64 99.48 0.66 -12.38 16 23 C 0.10 4.21 3.83 86.36 0.33 4.55 16 24 C 0.10 3.45 3.14 30.67 0.10 3.55 16 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 26 O -0.57 -18.02 13.16 -148.98 -1.96 -19.98 16 27 C -0.24 -5.07 10.62 67.12 0.71 -4.36 16 28 S 0.30 3.81 22.22 -56.49 -1.26 2.55 16 29 H 0.07 0.37 7.91 -2.39 -0.02 0.35 16 30 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.07 0.37 7.92 -2.39 -0.02 0.35 16 36 H 0.41 12.21 8.12 -92.71 -0.75 11.46 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 2.82 7.93 -2.39 -0.02 2.80 16 41 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.07 3.00 4.51 -2.39 -0.01 2.99 16 43 H 0.03 1.46 7.05 -2.38 -0.02 1.44 16 44 H 0.39 9.44 9.08 -74.06 -0.67 8.76 16 45 H 0.19 3.74 8.03 -2.91 -0.02 3.72 16 Total: -1.00 -73.26 375.12 -1.76 -75.02 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: -0.50 Total: 26.15 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 6.00 Total: 17.22 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -5.66 Total: -126.48 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -2.03 Total: -42.06 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.67 Total: 47.59 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.26 Total: 2.55 kcal Total: -73.26 -1.76 -75.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090650063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.104 kcal (2) G-P(sol) polarization free energy of solvation -73.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.01 seconds