Wall clock time and date at job start Tue Mar 31 2020 22:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47316 * 2 1 4 4 C 1.50703 * 109.47121 * 120.00109 * 2 1 3 5 5 S 1.70939 * 125.58550 * 308.77524 * 4 2 1 6 6 C 1.70767 * 91.13032 * 180.02562 * 5 4 2 7 7 N 1.28652 * 110.55980 * 359.72846 * 6 5 4 8 8 C 1.33564 * 115.76324 * 0.48925 * 7 6 5 9 9 C 1.47266 * 123.14229 * 179.75594 * 8 7 6 10 10 O 1.21627 * 120.00177 * 185.37222 * 9 8 7 11 11 N 1.34775 * 119.99705 * 5.64232 * 9 8 7 12 12 C 1.46497 * 119.99914 * 179.72148 * 11 9 8 13 13 H 1.09001 * 109.45891 * 35.00493 * 12 11 9 14 14 C 1.53039 * 109.46217 * 275.03211 * 12 11 9 15 15 C 1.53203 * 109.31293 * 178.61299 * 14 12 11 16 16 N 1.46928 * 108.77240 * 54.63595 * 15 14 12 17 17 C 1.36932 * 120.62711 * 126.37106 * 16 15 14 18 18 H 1.07998 * 120.00544 * 329.02427 * 17 16 15 19 19 C 1.38818 * 119.99816 * 149.02273 * 17 16 15 20 20 N 1.31618 * 120.00070 * 344.44172 * 19 17 16 21 21 Si 1.86802 * 119.99873 * 164.43746 * 19 17 16 22 22 H 1.48500 * 109.46953 * 90.00307 * 21 19 17 23 23 H 1.48503 * 109.46897 * 210.00356 * 21 19 17 24 24 H 1.48500 * 109.47123 * 330.00402 * 21 19 17 25 25 C 1.46923 * 118.73899 * 306.38795 * 16 15 14 26 26 C 1.53041 * 109.46098 * 154.97701 * 12 11 9 27 27 H 1.09003 * 109.49658 * 301.33699 * 26 12 11 28 28 O 1.42900 * 109.49752 * 61.43449 * 26 12 11 29 29 H 1.09001 * 109.46967 * 299.99768 * 1 2 3 30 30 H 1.08993 * 109.47017 * 59.99805 * 1 2 3 31 31 H 1.08996 * 109.47029 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47381 * 239.99986 * 2 1 3 33 33 H 1.09001 * 109.46913 * 60.00199 * 3 2 1 34 34 H 1.08996 * 109.47275 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46988 * 300.00117 * 3 2 1 36 36 H 1.07998 * 124.72189 * 179.97438 * 6 5 4 37 37 H 0.97000 * 120.00433 * 359.72928 * 11 9 8 38 38 H 1.08996 * 109.49809 * 298.56246 * 14 12 11 39 39 H 1.09000 * 109.49737 * 58.63298 * 14 12 11 40 40 H 1.09004 * 109.58548 * 174.42270 * 15 14 12 41 41 H 1.08996 * 109.58271 * 294.84923 * 15 14 12 42 42 H 0.96996 * 120.00048 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.58480 * 173.39982 * 25 16 15 44 44 H 1.08997 * 109.59246 * 293.82678 * 25 16 15 45 45 H 0.96704 * 113.99883 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 16 1.5431 -0.3859 2.8359 6 6 2.5835 -1.6006 3.4344 7 7 3.2139 -2.1715 2.4690 8 6 2.9443 -1.7086 1.2455 9 6 3.5766 -2.2398 0.0262 10 8 3.3637 -1.7121 -1.0487 11 7 4.3870 -3.3141 0.1008 12 6 5.0113 -3.8463 -1.1130 13 1 5.2519 -3.0248 -1.7877 14 6 4.0423 -4.8076 -1.8052 15 6 4.6849 -5.3354 -3.0920 16 7 5.9886 -5.9268 -2.7613 17 6 6.2899 -7.2077 -3.1405 18 1 5.5062 -7.9469 -3.2165 19 6 7.6027 -7.5560 -3.4272 20 7 8.5020 -6.6178 -3.6357 21 14 8.0931 -9.3562 -3.5170 22 1 7.9207 -9.8474 -4.9078 23 1 9.5145 -9.5028 -3.1127 24 1 7.2338 -10.1495 -2.6018 25 6 6.9626 -5.1181 -2.0157 26 6 6.2943 -4.5931 -0.7411 27 1 6.9746 -3.9139 -0.2272 28 8 5.9759 -5.6902 0.1174 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.6938 -1.8569 4.4777 37 1 4.5569 -3.7350 0.9580 38 1 3.8209 -5.6424 -1.1403 39 1 3.1193 -4.2813 -2.0484 40 1 4.0415 -6.0944 -3.5370 41 1 4.8240 -4.5137 -3.7944 42 1 9.4193 -6.8611 -3.8357 43 1 7.8221 -5.7338 -1.7507 44 1 7.2875 -4.2787 -2.6304 45 1 6.7436 -6.2095 0.3932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090718850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:27 Heat of formation + Delta-G solvation = -49.845512 kcal Electronic energy + Delta-G solvation = -27948.948804 eV Core-core repulsion = 24092.630425 eV Total energy + Delta-G solvation = -3856.318378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 30.94 seconds Orbital eigenvalues (eV) -41.76804 -40.33872 -39.11636 -36.84730 -36.48761 -35.64874 -33.90448 -31.52431 -30.85792 -30.48223 -28.09387 -27.48144 -26.31041 -24.40955 -23.80519 -22.95614 -22.41541 -21.24174 -20.58785 -19.15655 -18.96570 -17.91125 -17.34173 -17.07631 -16.88588 -16.48161 -16.39877 -15.72040 -15.48529 -15.34041 -15.23365 -15.11857 -14.85318 -14.66475 -14.43340 -13.99625 -13.81406 -13.67590 -13.20468 -13.12163 -13.01716 -12.83563 -12.64166 -12.45114 -12.41800 -12.33939 -12.22115 -12.14736 -11.98536 -11.85009 -11.46305 -10.82569 -10.79408 -10.67372 -10.59923 -10.40112 -10.18041 -9.83611 -8.65015 -7.88878 -5.36275 -0.46962 0.27712 0.65219 0.95080 1.47206 1.48965 1.59118 2.15788 2.29232 2.50868 3.13631 3.24735 3.37455 3.58114 3.65087 3.82352 3.85745 3.97506 4.09960 4.17044 4.31311 4.33728 4.35901 4.56229 4.57633 4.69493 4.71163 4.80622 4.87646 4.88969 4.91415 4.95724 5.04423 5.14852 5.15807 5.29737 5.32593 5.39763 5.52008 5.53792 5.64472 6.29984 6.37896 6.63162 6.88741 7.12640 7.14171 7.80420 8.35863 9.17719 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024774 B = 0.002644 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.965938 B =10586.156715 C =11121.524835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C -0.134 4.134 4 C -0.185 4.185 5 S 0.281 5.719 6 C -0.009 4.009 7 N -0.468 5.468 8 C -0.032 4.032 9 C 0.585 3.415 10 O -0.561 6.561 11 N -0.694 5.694 12 C 0.169 3.831 13 H 0.078 0.922 14 C -0.118 4.118 15 C 0.147 3.853 16 N -0.597 5.597 17 C -0.259 4.259 18 H 0.060 0.940 19 C -0.043 4.043 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.272 1.272 25 C 0.155 3.845 26 C 0.090 3.910 27 H 0.065 0.935 28 O -0.561 6.561 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.240 0.760 37 H 0.414 0.586 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.014 0.986 42 H 0.251 0.749 43 H 0.069 0.931 44 H 0.007 0.993 45 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.992 15.891 17.374 27.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.192 4.192 4 C -0.309 4.309 5 S 0.538 5.462 6 C -0.308 4.308 7 N -0.182 5.182 8 C -0.166 4.166 9 C 0.370 3.630 10 O -0.442 6.442 11 N -0.343 5.343 12 C 0.064 3.936 13 H 0.096 0.904 14 C -0.158 4.158 15 C 0.021 3.979 16 N -0.320 5.320 17 C -0.389 4.389 18 H 0.077 0.923 19 C -0.239 4.239 20 N -0.580 5.580 21 Si 0.796 3.204 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.197 1.197 25 C 0.028 3.972 26 C 0.029 3.971 27 H 0.083 0.917 28 O -0.368 6.368 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.256 0.744 37 H 0.251 0.749 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.032 0.968 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.025 0.975 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -15.850 16.655 17.120 28.665 hybrid contribution 1.947 -1.915 -0.847 2.859 sum -13.902 14.740 16.273 25.987 Atomic orbital electron populations 1.21916 0.92136 1.02162 1.03657 1.20217 0.97095 0.96525 0.93574 1.21806 1.00543 0.93419 1.03438 1.25960 1.00650 1.00325 1.04011 1.82402 1.38139 1.33170 0.92518 1.28997 0.98601 0.98614 1.04601 1.66941 1.25163 1.27896 0.98246 1.20147 1.03504 1.00752 0.92210 1.17532 0.78458 0.79839 0.87136 1.90665 1.62778 1.60951 1.29788 1.45889 1.46946 1.29814 1.11669 1.20781 0.92055 0.94700 0.86060 0.90374 1.22073 0.97520 0.98351 0.97890 1.20961 0.87382 0.95772 0.93822 1.44048 1.13020 1.12471 1.62482 1.19381 0.93225 0.86685 1.39615 0.92262 1.25799 0.97486 1.01165 0.99461 1.70152 1.02888 1.32820 1.52113 0.85279 0.76927 0.80492 0.77698 1.21449 1.21591 1.19663 1.21247 0.92425 0.93628 0.89860 1.22518 0.94650 0.87953 0.91958 0.91749 1.86342 1.38523 1.44660 1.67306 0.90781 0.90456 0.93216 0.88343 0.90863 0.94039 0.90569 0.74410 0.74881 0.92106 0.92333 0.92481 0.96790 0.93945 0.91268 0.97502 0.76487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.01 71.98 0.65 -1.53 16 2 C -0.05 -1.13 3.04 -11.54 -0.04 -1.16 16 3 C -0.13 -2.30 9.18 71.98 0.66 -1.64 16 4 C -0.18 -4.02 5.06 24.99 0.13 -3.89 16 5 S 0.28 3.47 22.32 -56.49 -1.26 2.21 16 6 C -0.01 -0.13 12.17 130.71 1.59 1.46 16 7 N -0.47 -11.24 10.14 -193.02 -1.96 -13.19 16 8 C -0.03 -0.89 6.70 40.56 0.27 -0.62 16 9 C 0.58 19.78 7.75 86.62 0.67 20.45 16 10 O -0.56 -21.36 13.56 -4.12 -0.06 -21.42 16 11 N -0.69 -23.36 5.05 -445.83 -2.25 -25.61 16 12 C 0.17 6.37 2.20 45.02 0.10 6.47 16 13 H 0.08 3.18 7.58 -2.39 -0.02 3.16 16 14 C -0.12 -4.71 5.51 30.67 0.17 -4.54 16 15 C 0.15 6.64 6.52 86.37 0.56 7.20 16 16 N -0.60 -30.52 2.92 -699.08 -2.04 -32.56 16 17 C -0.26 -14.34 9.56 84.04 0.80 -13.54 16 18 H 0.06 3.27 7.88 -2.91 -0.02 3.25 16 19 C -0.04 -2.40 4.93 84.86 0.42 -1.98 16 20 N -0.93 -54.30 11.33 21.65 0.25 -54.06 16 21 Si 0.97 44.57 29.58 68.60 2.03 46.60 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 23 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 C 0.16 7.36 4.92 86.36 0.42 7.79 16 26 C 0.09 3.43 3.38 30.67 0.10 3.54 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 O -0.56 -20.51 12.08 -148.98 -1.80 -22.31 16 29 H 0.07 0.82 7.76 -2.39 -0.02 0.80 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 2.83 5.10 -2.39 -0.01 2.82 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.24 1.47 8.06 -2.91 -0.02 1.44 16 37 H 0.41 13.31 7.79 -92.71 -0.72 12.59 16 38 H 0.06 2.54 7.61 -2.39 -0.02 2.52 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.06 2.53 7.93 -2.38 -0.02 2.51 16 41 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 43 H 0.07 3.57 6.24 -2.39 -0.01 3.56 16 44 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.39 12.09 9.08 -74.05 -0.67 11.42 16 Total: -1.00 -70.26 374.81 -0.94 -71.20 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -0.37 Total: 31.13 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 6.52 Total: 18.01 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -6.00 Total: -125.42 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -1.86 Total: -43.73 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.26 Total: 2.21 kcal Total: -70.26 -0.94 -71.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090718850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.351 kcal (2) G-P(sol) polarization free energy of solvation -70.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 30.94 seconds