Wall clock time and date at job start Tue Mar 31 2020 23:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47647 * 2 1 4 4 C 1.50701 * 109.47133 * 120.00101 * 2 1 3 5 5 N 1.29430 * 124.80791 * 299.95861 * 4 2 1 6 6 C 1.30943 * 117.36932 * 179.76565 * 5 4 2 7 7 C 1.35665 * 114.18767 * 0.48383 * 6 5 4 8 8 C 1.46676 * 126.12908 * 179.82427 * 7 6 5 9 9 O 1.21690 * 120.00280 * 179.68692 * 8 7 6 10 10 N 1.34784 * 119.99951 * 359.68968 * 8 7 6 11 11 C 1.46501 * 119.99968 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.46044 * 35.02121 * 11 10 8 13 13 C 1.53038 * 109.44438 * 275.05892 * 11 10 8 14 14 C 1.53184 * 109.31420 * 301.34944 * 13 11 10 15 15 N 1.46931 * 108.77900 * 305.36680 * 14 13 11 16 16 C 1.36930 * 120.63477 * 233.88628 * 15 14 13 17 17 H 1.07998 * 120.00455 * 151.58501 * 16 15 14 18 18 C 1.38815 * 119.99816 * 331.57924 * 16 15 14 19 19 N 1.31621 * 119.99984 * 343.18964 * 18 16 15 20 20 Si 1.86800 * 120.00122 * 163.18643 * 18 16 15 21 21 H 1.48503 * 109.47174 * 60.00002 * 20 18 16 22 22 H 1.48497 * 109.47073 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47370 * 300.00248 * 20 18 16 24 24 C 1.46927 * 118.73501 * 53.60671 * 15 14 13 25 25 C 1.53034 * 109.46081 * 154.99614 * 11 10 8 26 26 H 1.08996 * 109.52407 * 178.60492 * 25 11 10 27 27 O 1.42900 * 109.49915 * 298.69227 * 25 11 10 28 28 S 1.70952 * 124.80528 * 119.99690 * 4 2 1 29 29 H 1.08996 * 109.46873 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46538 * 299.99769 * 1 2 3 31 31 H 1.08999 * 109.46555 * 59.99814 * 1 2 3 32 32 H 1.08999 * 109.47027 * 239.99641 * 2 1 3 33 33 H 1.08996 * 109.47198 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46819 * 300.00303 * 3 2 1 35 35 H 1.08999 * 109.47200 * 59.99747 * 3 2 1 36 36 H 1.08000 * 122.90478 * 180.29900 * 6 5 4 37 37 H 0.96993 * 120.00261 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.50124 * 61.30756 * 13 11 10 39 39 H 1.09004 * 109.49546 * 181.36991 * 13 11 10 40 40 H 1.09002 * 109.59146 * 185.58364 * 14 13 11 41 41 H 1.09003 * 109.58804 * 65.15780 * 14 13 11 42 42 H 0.97002 * 120.00123 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.58465 * 66.17608 * 24 15 14 44 44 H 1.08997 * 109.58427 * 186.46138 * 24 15 14 45 45 H 0.96699 * 113.99825 * 179.83926 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7783 -0.3498 2.4473 6 6 2.2870 -1.0777 3.4095 7 6 3.0340 -2.1251 2.9787 8 6 3.7247 -3.1018 3.8275 9 8 4.3626 -4.0054 3.3201 10 7 3.6527 -2.9986 5.1694 11 6 4.3431 -3.9738 6.0172 12 1 5.2766 -4.2729 5.5405 13 6 3.4520 -5.2031 6.2091 14 6 2.1273 -4.7738 6.8475 15 7 2.4156 -4.0382 8.0863 16 6 1.8442 -4.4168 9.2717 17 1 2.3545 -4.2226 10.2035 18 6 0.6089 -5.0500 9.2757 19 7 -0.1615 -4.9965 8.2099 20 14 0.0400 -5.9782 10.7937 21 1 -0.0315 -5.0450 11.9466 22 1 -1.3034 -6.5594 10.5439 23 1 1.0026 -7.0674 11.0976 24 6 3.3337 -2.8924 8.0300 25 6 4.6449 -3.3428 7.3783 26 1 5.1364 -4.0754 8.0185 27 8 5.5019 -2.2131 7.2009 28 16 3.0193 -2.1063 1.2167 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4423 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 2.1283 -0.8612 4.4556 37 1 3.1446 -2.2782 5.5739 38 1 3.2566 -5.6655 5.2416 39 1 3.9547 -5.9188 6.8596 40 1 1.5295 -5.6559 7.0772 41 1 1.5814 -4.1293 6.1584 42 1 -1.0249 -5.4387 8.2128 43 1 2.8863 -2.0946 7.4373 44 1 3.5299 -2.5316 9.0396 45 1 5.7330 -1.7616 8.0242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090859320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:39 Heat of formation + Delta-G solvation = -26.398636 kcal Electronic energy + Delta-G solvation = -27706.175102 eV Core-core repulsion = 23850.873457 eV Total energy + Delta-G solvation = -3855.301645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.30343 -39.48692 -37.85428 -35.63706 -35.47507 -34.10439 -31.94873 -30.70212 -29.53179 -28.46545 -27.44293 -26.12602 -25.29798 -22.90705 -22.37036 -22.03227 -21.36410 -19.40985 -18.86910 -18.08812 -17.23774 -17.01845 -16.51868 -15.53408 -15.32325 -15.10162 -14.93950 -14.55451 -14.41648 -14.32535 -14.09868 -13.80483 -13.67019 -13.33447 -13.04428 -12.72286 -12.40890 -12.32113 -12.07418 -11.93321 -11.73341 -11.61532 -11.49877 -11.29376 -11.20871 -10.90798 -10.73009 -10.44996 -10.25595 -10.17977 -9.98473 -9.84352 -9.51444 -9.50720 -9.46704 -9.01954 -8.67411 -8.54679 -6.80940 -5.89872 -3.34963 0.22544 1.09231 1.61377 2.46676 3.32045 3.35661 3.38867 3.39205 3.47723 3.84661 4.32848 4.47599 4.52320 4.70471 4.77052 4.94801 5.15564 5.21471 5.24839 5.28355 5.37141 5.41524 5.49473 5.52933 5.56708 5.63656 5.65372 5.87388 5.91176 5.95546 6.00487 6.08442 6.19487 6.39894 6.48362 6.59608 6.63781 6.84360 7.22823 7.54334 7.54850 7.68258 7.72163 7.87588 8.32495 8.38118 9.07898 9.70064 10.25430 11.18237 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.003038 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.603182 B = 9215.697644 C =10118.640633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.017 4.017 3 C -0.140 4.140 4 C 0.042 3.958 5 N -0.471 5.471 6 C 0.095 3.905 7 C -0.285 4.285 8 C 0.594 3.406 9 O -0.546 6.546 10 N -0.690 5.690 11 C 0.168 3.832 12 H 0.081 0.919 13 C -0.154 4.154 14 C 0.172 3.828 15 N -0.586 5.586 16 C -0.262 4.262 17 H 0.066 0.934 18 C 0.007 3.993 19 N -0.898 5.898 20 Si 0.905 3.095 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.118 3.882 25 C 0.075 3.925 26 H 0.069 0.931 27 O -0.571 6.571 28 S 0.214 5.786 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.181 0.819 37 H 0.402 0.598 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.021 0.979 42 H 0.256 0.744 43 H 0.021 0.979 44 H 0.060 0.940 45 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.499 9.865 -14.145 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.039 4.039 3 C -0.199 4.199 4 C -0.232 4.232 5 N -0.185 5.185 6 C -0.063 4.063 7 C -0.410 4.410 8 C 0.378 3.622 9 O -0.425 6.425 10 N -0.341 5.341 11 C 0.063 3.937 12 H 0.100 0.900 13 C -0.194 4.194 14 C 0.046 3.954 15 N -0.310 5.310 16 C -0.391 4.391 17 H 0.084 0.916 18 C -0.192 4.192 19 N -0.542 5.542 20 Si 0.734 3.266 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.209 1.209 24 C -0.009 4.009 25 C 0.014 3.986 26 H 0.087 0.913 27 O -0.375 6.375 28 S 0.473 5.527 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.198 0.802 37 H 0.239 0.761 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.039 0.961 42 H 0.066 0.934 43 H 0.039 0.961 44 H 0.079 0.921 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.854 8.787 -15.870 19.061 hybrid contribution -0.758 0.141 2.671 2.780 sum 5.095 8.928 -13.199 16.730 Atomic orbital electron populations 1.21818 0.92586 1.02601 1.02975 1.19871 0.97138 0.96139 0.90767 1.21808 1.01170 0.93927 1.02968 1.27547 1.00260 0.98228 0.97206 1.66014 1.23344 1.30692 0.98436 1.22202 0.93742 0.90162 1.00228 1.25807 1.11868 1.05376 0.97915 1.16643 0.80056 0.83329 0.82137 1.90807 1.43053 1.34646 1.74029 1.45696 1.52336 1.31450 1.04578 1.20899 0.95537 0.88601 0.88637 0.90047 1.22611 0.99842 0.95877 1.01113 1.20796 0.91186 0.97414 0.85999 1.43983 1.51528 1.29443 1.06065 1.19100 0.99128 1.35579 0.85298 0.91624 1.25067 0.95228 1.01559 0.97355 1.70017 1.10095 1.44940 1.29101 0.86345 0.77638 0.80101 0.82499 1.20830 1.21560 1.20911 1.21541 0.89874 0.90979 0.98542 1.22756 0.91988 0.87948 0.95878 0.91344 1.86484 1.69228 1.45687 1.36129 1.83954 1.44014 1.23959 1.00725 0.92364 0.91233 0.91575 0.89240 0.92494 0.91586 0.91270 0.80222 0.76113 0.91764 0.91249 0.89174 0.96055 0.93401 0.96103 0.92118 0.77900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.17 37.16 0.34 -0.78 16 2 C -0.02 -0.14 3.35 -91.77 -0.31 -0.45 16 3 C -0.14 -1.04 9.17 37.16 0.34 -0.70 16 4 C 0.04 0.49 5.90 -13.29 -0.08 0.41 16 5 N -0.47 -6.36 10.49 -11.50 -0.12 -6.48 16 6 C 0.09 1.33 10.93 -18.85 -0.21 1.12 16 7 C -0.29 -4.33 6.48 -37.10 -0.24 -4.57 16 8 C 0.59 10.48 7.75 -12.85 -0.10 10.38 16 9 O -0.55 -11.05 16.63 5.20 0.09 -10.97 16 10 N -0.69 -11.76 4.14 -55.07 -0.23 -11.98 16 11 C 0.17 2.98 2.47 -67.89 -0.17 2.82 16 12 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 13 C -0.15 -2.99 5.77 -26.62 -0.15 -3.14 16 14 C 0.17 3.93 5.05 -3.71 -0.02 3.91 16 15 N -0.59 -13.64 2.99 -172.32 -0.52 -14.16 16 16 C -0.26 -6.79 9.58 -15.06 -0.14 -6.93 16 17 H 0.07 1.66 7.88 -52.49 -0.41 1.25 16 18 C 0.01 0.20 4.92 -17.43 -0.09 0.11 16 19 N -0.90 -25.16 11.20 55.49 0.62 -24.54 16 20 Si 0.90 20.99 29.59 -169.99 -5.03 15.96 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.12 2.23 5.84 -3.71 -0.02 2.20 16 25 C 0.08 1.24 3.36 -26.61 -0.09 1.15 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 27 O -0.57 -8.34 13.21 -35.23 -0.47 -8.81 16 28 S 0.21 2.68 23.00 -107.50 -2.47 0.21 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.18 2.29 7.15 -52.49 -0.38 1.92 16 37 H 0.40 6.52 5.58 -40.82 -0.23 6.29 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 41 H 0.02 0.51 7.74 -51.93 -0.40 0.11 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.02 0.40 6.64 -51.93 -0.34 0.05 16 44 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 45 H 0.37 3.88 9.08 45.56 0.41 4.29 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -31.55 377.66 -9.19 -40.75 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.83 Total: 8.79 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -0.93 Total: 5.54 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.24 Total: -57.15 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.38 Total: -19.78 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -2.47 Total: 0.21 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.55 -9.19 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090859320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.347 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds