Wall clock time and date at job start Tue Mar 31 2020 23:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47647 * 2 1 4 4 C 1.50701 * 109.47133 * 120.00101 * 2 1 3 5 5 N 1.29430 * 124.80791 * 299.95861 * 4 2 1 6 6 C 1.30943 * 117.36932 * 179.76565 * 5 4 2 7 7 C 1.35665 * 114.18767 * 0.48383 * 6 5 4 8 8 C 1.46676 * 126.12908 * 179.82427 * 7 6 5 9 9 O 1.21690 * 120.00280 * 179.68692 * 8 7 6 10 10 N 1.34784 * 119.99951 * 359.68968 * 8 7 6 11 11 C 1.46501 * 119.99968 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.46044 * 35.02121 * 11 10 8 13 13 C 1.53038 * 109.44438 * 275.05892 * 11 10 8 14 14 C 1.53184 * 109.31420 * 301.34944 * 13 11 10 15 15 N 1.46931 * 108.77900 * 305.36680 * 14 13 11 16 16 C 1.36930 * 120.63477 * 233.88628 * 15 14 13 17 17 H 1.07998 * 120.00455 * 151.58501 * 16 15 14 18 18 C 1.38815 * 119.99816 * 331.57924 * 16 15 14 19 19 N 1.31621 * 119.99984 * 343.18964 * 18 16 15 20 20 Si 1.86800 * 120.00122 * 163.18643 * 18 16 15 21 21 H 1.48503 * 109.47174 * 60.00002 * 20 18 16 22 22 H 1.48497 * 109.47073 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47370 * 300.00248 * 20 18 16 24 24 C 1.46927 * 118.73501 * 53.60671 * 15 14 13 25 25 C 1.53034 * 109.46081 * 154.99614 * 11 10 8 26 26 H 1.08996 * 109.52407 * 178.60492 * 25 11 10 27 27 O 1.42900 * 109.49915 * 298.69227 * 25 11 10 28 28 S 1.70952 * 124.80528 * 119.99690 * 4 2 1 29 29 H 1.08996 * 109.46873 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46538 * 299.99769 * 1 2 3 31 31 H 1.08999 * 109.46555 * 59.99814 * 1 2 3 32 32 H 1.08999 * 109.47027 * 239.99641 * 2 1 3 33 33 H 1.08996 * 109.47198 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46819 * 300.00303 * 3 2 1 35 35 H 1.08999 * 109.47200 * 59.99747 * 3 2 1 36 36 H 1.08000 * 122.90478 * 180.29900 * 6 5 4 37 37 H 0.96993 * 120.00261 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.50124 * 61.30756 * 13 11 10 39 39 H 1.09004 * 109.49546 * 181.36991 * 13 11 10 40 40 H 1.09002 * 109.59146 * 185.58364 * 14 13 11 41 41 H 1.09003 * 109.58804 * 65.15780 * 14 13 11 42 42 H 0.97002 * 120.00123 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.58465 * 66.17608 * 24 15 14 44 44 H 1.08997 * 109.58427 * 186.46138 * 24 15 14 45 45 H 0.96699 * 113.99825 * 179.83926 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7783 -0.3498 2.4473 6 6 2.2870 -1.0777 3.4095 7 6 3.0340 -2.1251 2.9787 8 6 3.7247 -3.1018 3.8275 9 8 4.3626 -4.0054 3.3201 10 7 3.6527 -2.9986 5.1694 11 6 4.3431 -3.9738 6.0172 12 1 5.2766 -4.2729 5.5405 13 6 3.4520 -5.2031 6.2091 14 6 2.1273 -4.7738 6.8475 15 7 2.4156 -4.0382 8.0863 16 6 1.8442 -4.4168 9.2717 17 1 2.3545 -4.2226 10.2035 18 6 0.6089 -5.0500 9.2757 19 7 -0.1615 -4.9965 8.2099 20 14 0.0400 -5.9782 10.7937 21 1 -0.0315 -5.0450 11.9466 22 1 -1.3034 -6.5594 10.5439 23 1 1.0026 -7.0674 11.0976 24 6 3.3337 -2.8924 8.0300 25 6 4.6449 -3.3428 7.3783 26 1 5.1364 -4.0754 8.0185 27 8 5.5019 -2.2131 7.2009 28 16 3.0193 -2.1063 1.2167 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4423 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 2.1283 -0.8612 4.4556 37 1 3.1446 -2.2782 5.5739 38 1 3.2566 -5.6655 5.2416 39 1 3.9547 -5.9188 6.8596 40 1 1.5295 -5.6559 7.0772 41 1 1.5814 -4.1293 6.1584 42 1 -1.0249 -5.4387 8.2128 43 1 2.8863 -2.0946 7.4373 44 1 3.5299 -2.5316 9.0396 45 1 5.7330 -1.7616 8.0242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090859320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:33 Heat of formation + Delta-G solvation = -48.983659 kcal Electronic energy + Delta-G solvation = -27707.154462 eV Core-core repulsion = 23850.873457 eV Total energy + Delta-G solvation = -3856.281005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 9.53 seconds Orbital eigenvalues (eV) -41.55402 -40.70312 -39.29985 -36.95843 -36.39946 -35.66458 -33.64877 -32.26449 -30.90926 -29.94248 -28.04194 -27.33978 -26.91208 -24.21735 -23.75743 -23.61002 -22.55901 -20.62247 -20.31933 -19.19533 -18.76475 -18.24419 -17.96753 -16.92301 -16.79776 -16.43532 -16.26172 -15.79507 -15.69898 -15.56012 -15.34210 -15.18993 -14.89615 -14.71055 -14.39686 -13.91945 -13.74451 -13.58476 -13.27221 -13.03811 -12.97325 -12.72091 -12.68830 -12.64540 -12.39852 -12.24254 -12.13998 -12.02073 -11.95828 -11.86011 -11.50956 -11.25096 -11.04146 -10.62622 -10.58807 -10.51644 -10.19814 -9.94223 -8.71685 -7.89857 -5.36569 -0.84379 0.06687 0.58643 1.34854 1.47730 1.50445 1.56381 2.07115 2.15490 2.49095 2.94636 3.12684 3.26747 3.62919 3.66654 3.74432 3.87874 4.02858 4.04372 4.10898 4.12999 4.22075 4.35305 4.45849 4.50055 4.64576 4.79556 4.82940 4.84678 4.90578 4.95377 4.96702 5.01274 5.10151 5.11190 5.35257 5.36651 5.40515 5.42249 5.61786 5.67992 6.34348 6.35137 6.51869 6.87446 7.02192 7.11091 7.79796 8.31178 9.16202 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.003038 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.603182 B = 9215.697644 C =10118.640633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.021 4.021 3 C -0.137 4.137 4 C 0.059 3.941 5 N -0.492 5.492 6 C 0.105 3.895 7 C -0.322 4.322 8 C 0.593 3.407 9 O -0.578 6.578 10 N -0.687 5.687 11 C 0.169 3.831 12 H 0.079 0.921 13 C -0.141 4.141 14 C 0.185 3.815 15 N -0.601 5.601 16 C -0.265 4.265 17 H 0.073 0.927 18 C -0.046 4.046 19 N -0.931 5.931 20 Si 0.965 3.035 21 H -0.274 1.274 22 H -0.298 1.298 23 H -0.279 1.279 24 C 0.118 3.882 25 C 0.096 3.904 26 H 0.075 0.925 27 O -0.571 6.571 28 S 0.232 5.768 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.187 0.813 37 H 0.406 0.594 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.001 0.999 42 H 0.249 0.751 43 H 0.024 0.976 44 H 0.072 0.928 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.329 11.250 -14.740 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.043 4.043 3 C -0.195 4.195 4 C -0.215 4.215 5 N -0.206 5.206 6 C -0.055 4.055 7 C -0.446 4.446 8 C 0.380 3.620 9 O -0.460 6.460 10 N -0.337 5.337 11 C 0.064 3.936 12 H 0.097 0.903 13 C -0.181 4.181 14 C 0.059 3.941 15 N -0.325 5.325 16 C -0.395 4.395 17 H 0.091 0.909 18 C -0.242 4.242 19 N -0.576 5.576 20 Si 0.794 3.206 21 H -0.200 1.200 22 H -0.225 1.225 23 H -0.205 1.205 24 C -0.009 4.009 25 C 0.035 3.965 26 H 0.093 0.907 27 O -0.378 6.378 28 S 0.492 5.508 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.204 0.796 37 H 0.243 0.757 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.042 0.958 44 H 0.090 0.910 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 6.722 10.207 -16.443 20.487 hybrid contribution -1.012 -0.168 2.779 2.963 sum 5.710 10.039 -13.663 17.890 Atomic orbital electron populations 1.21819 0.92063 1.02397 1.03497 1.20189 0.97474 0.96715 0.89956 1.21802 1.01160 0.93083 1.03501 1.28285 0.98216 0.97218 0.97793 1.66106 1.24282 1.31138 0.99027 1.22363 0.92685 0.89540 1.00876 1.25643 1.13717 1.05989 0.99296 1.16932 0.79536 0.83244 0.82294 1.90775 1.44638 1.36088 1.74533 1.45652 1.52203 1.31286 1.04602 1.20806 0.94912 0.88252 0.89601 0.90253 1.22405 0.98361 0.96904 1.00412 1.20473 0.92187 0.95569 0.85854 1.44145 1.52033 1.31027 1.05326 1.19468 0.98919 1.34681 0.86429 0.90925 1.25784 0.95685 1.02890 0.99835 1.70171 1.10233 1.46232 1.31014 0.85377 0.76596 0.78952 0.79703 1.19965 1.22470 1.20467 1.21689 0.89952 0.89618 0.99611 1.22348 0.91036 0.88596 0.94541 0.90714 1.86458 1.68365 1.45083 1.37919 1.83837 1.44001 1.24200 0.98789 0.92943 0.92882 0.88908 0.86699 0.92506 0.89020 0.92794 0.79637 0.75681 0.92390 0.90717 0.92733 0.98041 0.94179 0.95829 0.90992 0.75361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.17 71.98 0.66 -1.26 16 2 C -0.02 -0.30 3.35 -11.54 -0.04 -0.34 16 3 C -0.14 -1.70 9.17 71.98 0.66 -1.04 16 4 C 0.06 1.30 5.90 88.46 0.52 1.82 16 5 N -0.49 -12.93 10.49 -190.30 -2.00 -14.92 16 6 C 0.10 2.92 10.93 84.23 0.92 3.84 16 7 C -0.32 -9.80 6.48 23.88 0.15 -9.65 16 8 C 0.59 21.17 7.75 86.45 0.67 21.84 16 9 O -0.58 -23.73 16.63 -4.32 -0.07 -23.80 16 10 N -0.69 -23.41 4.14 -446.37 -1.85 -25.26 16 11 C 0.17 5.93 2.47 45.01 0.11 6.04 16 12 H 0.08 2.88 7.58 -2.39 -0.02 2.86 16 13 C -0.14 -5.51 5.77 30.67 0.18 -5.34 16 14 C 0.19 8.69 5.05 86.36 0.44 9.12 16 15 N -0.60 -27.93 2.99 -699.09 -2.09 -30.02 16 16 C -0.27 -13.68 9.58 84.04 0.81 -12.88 16 17 H 0.07 3.59 7.88 -2.91 -0.02 3.56 16 18 C -0.05 -2.47 4.92 84.86 0.42 -2.05 16 19 N -0.93 -53.57 11.20 21.65 0.24 -53.33 16 20 Si 0.97 43.44 29.59 68.60 2.03 45.47 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 C 0.12 4.28 5.84 86.36 0.50 4.78 16 25 C 0.10 3.01 3.36 30.67 0.10 3.11 16 26 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 27 O -0.57 -15.21 13.21 -148.98 -1.97 -17.18 16 28 S 0.23 5.62 23.00 -56.49 -1.30 4.32 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 1.11 8.12 -2.39 -0.02 1.09 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.19 4.74 7.15 -2.91 -0.02 4.72 16 37 H 0.41 13.11 5.58 -92.71 -0.52 12.59 16 38 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 39 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 40 H 0.05 2.95 6.06 -2.39 -0.01 2.94 16 41 H 0.00 0.07 7.74 -2.39 -0.02 0.06 16 42 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 43 H 0.02 0.87 6.64 -2.39 -0.02 0.85 16 44 H 0.07 2.45 7.93 -2.39 -0.02 2.43 16 45 H 0.40 6.91 9.08 -74.06 -0.67 6.24 16 Total: -1.00 -68.63 377.66 -1.06 -69.69 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -0.16 Total: 27.02 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 6.10 Total: 18.01 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -5.69 Total: -123.53 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -2.04 Total: -40.98 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.30 Total: 4.32 kcal Total: -68.63 -1.06 -69.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090859320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.705 kcal (2) G-P(sol) polarization free energy of solvation -68.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.53 seconds