Wall clock time and date at job start Tue Mar 31 2020 23:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46752 * 2 1 4 4 C 1.50699 * 109.47029 * 119.99947 * 2 1 3 5 5 N 1.29426 * 124.80518 * 300.02126 * 4 2 1 6 6 C 1.30937 * 117.36764 * 179.97438 * 5 4 2 7 7 C 1.35661 * 114.18994 * 359.97438 * 6 5 4 8 8 C 1.46686 * 126.12978 * 180.02562 * 7 6 5 9 9 O 1.21689 * 119.99677 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00085 * 0.02690 * 8 7 6 11 11 C 1.46504 * 119.99766 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.46194 * 324.97196 * 11 10 8 13 13 C 1.53044 * 109.45065 * 84.94197 * 11 10 8 14 14 C 1.52755 * 109.38132 * 181.25215 * 13 11 10 15 15 N 1.46923 * 109.00900 * 305.58408 * 14 13 11 16 16 C 1.36943 * 120.62930 * 233.58508 * 15 14 13 17 17 H 1.08004 * 119.99477 * 152.17479 * 16 15 14 18 18 C 1.38811 * 119.99955 * 332.17173 * 16 15 14 19 19 N 1.31614 * 120.00254 * 342.76805 * 18 16 15 20 20 Si 1.86800 * 119.99811 * 162.76720 * 18 16 15 21 21 H 1.48500 * 109.47142 * 179.97438 * 20 18 16 22 22 H 1.48496 * 109.47443 * 300.00287 * 20 18 16 23 23 H 1.48507 * 109.46844 * 60.00261 * 20 18 16 24 24 C 1.46927 * 118.73893 * 53.31139 * 15 14 13 25 25 C 1.53046 * 109.45682 * 204.99749 * 11 10 8 26 26 H 1.08998 * 109.52193 * 58.66332 * 25 11 10 27 27 O 1.42894 * 109.49909 * 298.58243 * 25 11 10 28 28 S 1.70951 * 124.80667 * 120.30237 * 4 2 1 29 29 H 1.08999 * 109.47302 * 300.00015 * 1 2 3 30 30 H 1.09008 * 109.47467 * 60.00455 * 1 2 3 31 31 H 1.09004 * 109.47287 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47302 * 239.99985 * 2 1 3 33 33 H 1.08997 * 109.47593 * 60.00327 * 3 2 1 34 34 H 1.09007 * 109.47023 * 179.97438 * 3 2 1 35 35 H 1.09007 * 109.47123 * 299.99582 * 3 2 1 36 36 H 1.08007 * 122.90577 * 180.02562 * 6 5 4 37 37 H 0.97004 * 120.00158 * 359.97438 * 10 8 7 38 38 H 1.09007 * 109.49256 * 301.32587 * 13 11 10 39 39 H 1.09002 * 109.49531 * 61.42286 * 13 11 10 40 40 H 1.09005 * 109.50719 * 185.70148 * 14 13 11 41 41 H 1.09006 * 109.43430 * 65.42411 * 14 13 11 42 42 H 0.97000 * 119.99965 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.58525 * 66.43417 * 24 15 14 44 44 H 1.08995 * 109.58430 * 186.71314 * 24 15 14 45 45 H 0.96705 * 113.99942 * 180.16232 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7772 -0.3504 2.4472 6 6 2.2895 -1.0757 3.4095 7 6 3.0318 -2.1264 2.9788 8 6 3.7215 -3.1038 3.8276 9 8 4.3602 -4.0068 3.3202 10 7 3.6479 -3.0017 5.1694 11 6 4.3373 -3.9776 6.0172 12 1 4.3083 -4.9574 5.5405 13 6 5.7933 -3.5471 6.2095 14 6 6.5187 -4.5817 7.0678 15 7 5.7746 -4.7709 8.3205 16 6 6.4013 -4.6393 9.5309 17 1 5.8381 -4.3331 10.4001 18 6 7.7604 -4.8995 9.6408 19 7 8.3772 -5.5848 8.7016 20 14 8.7138 -4.2770 11.1216 21 1 10.1366 -4.6850 11.0015 22 1 8.6263 -2.7958 11.1798 23 1 8.1363 -4.8561 12.3612 24 6 4.3439 -5.0979 8.2498 25 6 3.6416 -4.0519 7.3783 26 1 2.5984 -4.3356 7.2392 27 8 3.7076 -2.7759 8.0181 28 16 3.0253 -2.1019 1.2168 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9563 -0.8901 36 1 2.1339 -0.8569 4.4556 37 1 3.1392 -2.2816 5.5739 38 1 6.2817 -3.4717 5.2379 39 1 5.8234 -2.5785 6.7086 40 1 7.5256 -4.2284 7.2906 41 1 6.5722 -5.5273 6.5282 42 1 9.3270 -5.7663 8.7782 43 1 4.2164 -6.0864 7.8086 44 1 3.9168 -5.0874 9.2525 45 1 3.2875 -2.7502 8.8887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090859322.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:23 Heat of formation + Delta-G solvation = -25.962703 kcal Electronic energy + Delta-G solvation = -27188.351491 eV Core-core repulsion = 23333.068749 eV Total energy + Delta-G solvation = -3855.282742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 17.74 seconds Orbital eigenvalues (eV) -40.40449 -39.49314 -37.96165 -35.77364 -34.95799 -34.36806 -32.00769 -30.69833 -29.59087 -28.59560 -27.56905 -26.30838 -25.01693 -22.99089 -22.37331 -22.08782 -20.96487 -19.75661 -19.00352 -18.37715 -17.32305 -16.97501 -16.16819 -15.77170 -15.36050 -15.29658 -14.73972 -14.63086 -14.43673 -14.42961 -14.14503 -13.87127 -13.71613 -13.24449 -13.18766 -12.82375 -12.51286 -12.15084 -12.09487 -12.04481 -11.77275 -11.62951 -11.42244 -11.26791 -11.04768 -10.84730 -10.75463 -10.36931 -10.30308 -10.22922 -10.05417 -9.75676 -9.65699 -9.61840 -9.36622 -9.17336 -8.74248 -8.41950 -6.69152 -5.79385 -3.21813 0.05968 0.93714 1.46552 2.29088 3.18605 3.31997 3.38614 3.44598 3.45660 3.69213 4.38093 4.46521 4.54972 4.64156 4.65097 4.79288 5.01477 5.04361 5.22320 5.25184 5.32565 5.36556 5.39485 5.43577 5.51847 5.56961 5.69989 5.73319 5.82226 5.91005 5.94176 6.18800 6.33078 6.45134 6.55408 6.60421 6.80153 6.86936 7.36952 7.38440 7.58371 7.67258 7.77506 8.05343 8.24749 8.43229 9.18621 9.81510 10.37452 11.29155 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026350 B = 0.002304 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.346659 B =12152.188701 C =12279.320541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.018 4.018 3 C -0.141 4.141 4 C 0.042 3.958 5 N -0.473 5.473 6 C 0.090 3.910 7 C -0.288 4.288 8 C 0.588 3.412 9 O -0.536 6.536 10 N -0.704 5.704 11 C 0.163 3.837 12 H 0.093 0.907 13 C -0.144 4.144 14 C 0.174 3.826 15 N -0.581 5.581 16 C -0.251 4.251 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.904 3.096 21 H -0.291 1.291 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.119 3.881 25 C 0.082 3.918 26 H 0.047 0.953 27 O -0.555 6.555 28 S 0.222 5.778 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.181 0.819 37 H 0.401 0.599 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.020 0.980 42 H 0.255 0.745 43 H 0.028 0.972 44 H 0.062 0.938 45 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.432 10.959 -16.096 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.040 4.040 3 C -0.199 4.199 4 C -0.233 4.233 5 N -0.187 5.187 6 C -0.068 4.068 7 C -0.413 4.413 8 C 0.372 3.628 9 O -0.414 6.414 10 N -0.355 5.355 11 C 0.060 3.940 12 H 0.111 0.889 13 C -0.184 4.184 14 C 0.047 3.953 15 N -0.304 5.304 16 C -0.380 4.380 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.217 1.217 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.009 4.009 25 C 0.020 3.980 26 H 0.064 0.936 27 O -0.360 6.360 28 S 0.482 5.518 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.198 0.802 37 H 0.236 0.764 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.038 0.962 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -15.312 10.200 -17.739 25.558 hybrid contribution -0.093 0.629 2.503 2.583 sum -15.406 10.829 -15.236 24.223 Atomic orbital electron populations 1.21810 0.92611 1.02471 1.02990 1.19884 0.97108 0.96229 0.90789 1.21816 1.01308 0.93828 1.02994 1.27567 1.00072 0.98420 0.97200 1.66015 1.23717 1.30489 0.98473 1.22179 0.94270 0.90154 1.00191 1.25883 1.11809 1.05490 0.98115 1.16745 0.80247 0.83553 0.82243 1.90860 1.42334 1.34358 1.73892 1.45978 1.52790 1.32011 1.04677 1.21110 0.93127 0.92221 0.87567 0.88877 1.22437 0.93536 1.02343 1.00084 1.20696 0.96368 0.93703 0.84494 1.43893 1.03233 1.80434 1.02803 1.19065 0.92108 1.39369 0.87496 0.91825 1.25037 0.98327 0.98384 0.97897 1.70022 1.09936 1.39614 1.34971 0.86357 0.79047 0.78873 0.82375 1.21660 1.21024 1.20941 1.21533 0.87589 0.94306 0.97481 1.22631 0.96779 0.85994 0.92576 0.93563 1.86440 1.82639 1.31269 1.35662 1.84091 1.43348 1.23839 1.00562 0.91319 0.91503 0.92453 0.89147 0.91305 0.92404 0.91494 0.80234 0.76403 0.92936 0.91460 0.89077 0.96222 0.93504 0.95471 0.91935 0.78009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.17 37.16 0.34 -0.51 16 2 C -0.02 -0.12 3.35 -91.77 -0.31 -0.43 16 3 C -0.14 -0.89 9.17 37.16 0.34 -0.55 16 4 C 0.04 0.41 5.90 -13.29 -0.08 0.33 16 5 N -0.47 -5.31 10.49 -11.50 -0.12 -5.43 16 6 C 0.09 1.02 10.93 -18.85 -0.21 0.82 16 7 C -0.29 -3.76 6.48 -37.09 -0.24 -4.01 16 8 C 0.59 9.37 7.75 -12.85 -0.10 9.27 16 9 O -0.54 -10.46 16.63 5.20 0.09 -10.38 16 10 N -0.70 -10.52 5.03 -55.07 -0.28 -10.79 16 11 C 0.16 2.88 2.20 -67.88 -0.15 2.73 16 12 H 0.09 1.78 7.58 -51.93 -0.39 1.38 16 13 C -0.14 -2.96 5.49 -26.83 -0.15 -3.11 16 14 C 0.17 4.24 5.28 -3.94 -0.02 4.22 16 15 N -0.58 -14.22 2.94 -172.58 -0.51 -14.72 16 16 C -0.25 -6.74 9.58 -15.06 -0.14 -6.88 16 17 H 0.06 1.66 7.89 -52.48 -0.41 1.24 16 18 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 19 N -0.90 -26.24 11.19 55.49 0.62 -25.62 16 20 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.12 2.33 6.16 -3.71 -0.02 2.31 16 25 C 0.08 1.32 3.38 -26.61 -0.09 1.23 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 O -0.56 -8.75 12.09 -35.23 -0.43 -9.17 16 28 S 0.22 2.44 23.00 -107.50 -2.47 -0.03 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.18 1.64 7.15 -52.48 -0.38 1.27 16 37 H 0.40 5.07 6.96 -40.82 -0.28 4.78 16 38 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 39 H 0.07 1.45 7.61 -51.93 -0.40 1.05 16 40 H 0.09 2.50 6.04 -51.93 -0.31 2.19 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 45 H 0.37 4.62 9.08 45.56 0.41 5.03 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -32.91 380.14 -9.27 -42.18 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.96 Total: 6.21 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -0.91 Total: 5.40 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.28 Total: -56.57 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.34 Total: -19.55 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.47 Total: -0.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.91 -9.27 -42.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090859322.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.214 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.74 seconds