Wall clock time and date at job start Wed Apr 1 2020 01:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46894 * 109.47344 * 124.99670 * 3 2 1 5 5 C 1.47470 * 111.00372 * 265.97290 * 4 3 2 6 6 C 1.53505 * 87.93446 * 221.29527 * 5 4 3 7 7 N 1.46507 * 114.17291 * 139.66981 * 6 5 4 8 8 C 1.46766 * 124.34854 * 146.16053 * 7 6 5 9 9 C 1.54485 * 105.47122 * 197.01655 * 8 7 6 10 10 H 1.08994 * 110.97005 * 216.46624 * 9 8 7 11 11 N 1.46499 * 110.96760 * 92.70079 * 9 8 7 12 12 C 1.34777 * 119.99954 * 154.99937 * 11 9 8 13 13 O 1.21289 * 119.99667 * 0.02562 * 12 11 9 14 14 C 1.50692 * 120.00262 * 180.02562 * 12 11 9 15 15 S 1.81003 * 109.47213 * 180.02562 * 14 12 11 16 16 C 1.76200 * 99.99868 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00271 * 359.97438 * 16 15 14 18 18 C 1.38804 * 119.99711 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99966 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99997 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47321 * 90.00441 * 20 18 16 22 22 H 1.48502 * 109.47051 * 210.00164 * 20 18 16 23 23 H 1.48501 * 109.47118 * 329.99848 * 20 18 16 24 24 C 1.54630 * 101.76347 * 334.58460 * 9 8 7 25 25 C 1.34421 * 124.34586 * 325.86093 * 7 6 5 26 26 O 1.21278 * 124.94386 * 359.57364 * 25 7 6 27 27 C 1.47483 * 111.00165 * 169.99918 * 4 3 2 28 28 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 30 30 H 1.07999 * 120.00108 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47249 * 245.00440 * 3 2 1 32 32 H 1.09006 * 109.47239 * 4.99581 * 3 2 1 33 33 H 1.08997 * 113.47960 * 336.06278 * 5 4 3 34 34 H 1.09001 * 113.48140 * 106.53058 * 5 4 3 35 35 H 1.09000 * 114.17645 * 272.37602 * 6 5 4 36 36 H 1.09000 * 110.24596 * 316.01192 * 8 7 6 37 37 H 1.08994 * 110.24729 * 77.93377 * 8 7 6 38 38 H 0.96994 * 120.00170 * 335.00173 * 11 9 8 39 39 H 1.09003 * 109.47490 * 300.00103 * 14 12 11 40 40 H 1.08992 * 109.47340 * 60.00073 * 14 12 11 41 41 H 0.96997 * 120.00699 * 180.02562 * 19 18 16 42 42 H 1.09002 * 110.48248 * 143.47673 * 24 9 8 43 43 H 1.08995 * 110.48587 * 265.98442 * 24 9 8 44 44 H 1.09001 * 113.47363 * 253.47600 * 27 4 3 45 45 H 1.08998 * 113.47317 * 23.93551 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3321 1.1345 5 6 2.3871 1.9925 2.3040 6 6 3.7360 2.6842 2.5461 7 7 3.6261 4.0872 2.9534 8 6 4.5482 4.7553 3.8794 9 6 3.8144 6.0342 4.3405 10 1 4.5128 6.8619 4.4630 11 7 3.0680 5.7931 5.5778 12 6 2.7884 6.8184 6.4067 13 8 3.1544 7.9406 6.1281 14 6 2.0211 6.5704 7.6797 15 16 1.8062 8.1324 8.5687 16 6 0.9062 7.5639 9.9728 17 1 0.6585 6.5171 10.0679 18 6 0.5146 8.4619 10.9562 19 7 -0.1581 8.0373 12.0049 20 14 0.9424 10.2727 10.7913 21 1 -0.1469 10.9746 10.0661 22 1 1.1018 10.8686 12.1422 23 1 2.2123 10.4145 10.0348 24 6 2.8541 6.2911 3.1560 25 6 2.6712 4.9294 2.5225 26 8 1.7898 4.6393 1.7416 27 6 3.9161 2.4806 1.0353 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9352 0.0044 30 1 1.8501 -0.9353 -0.0004 31 1 2.6213 1.4027 -0.9314 32 1 1.3586 2.1317 0.0895 33 1 1.5853 2.6834 2.0438 34 1 2.1062 1.2992 3.0968 35 1 4.4290 2.1087 3.1598 36 1 4.7569 4.1115 4.7338 37 1 5.4749 5.0144 3.3675 38 1 2.7750 4.8957 5.8004 39 1 1.0436 6.1522 7.4393 40 1 2.5724 5.8687 8.3055 41 1 -0.4322 8.6648 12.6920 42 1 1.9009 6.6790 3.5150 43 1 3.3031 6.9837 2.4442 44 1 4.9311 2.2008 0.7528 45 1 3.5224 3.3018 0.4364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108510839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:11 Heat of formation + Delta-G solvation = 2.654331 kcal Electronic energy + Delta-G solvation = -26521.254112 eV Core-core repulsion = 22667.212298 eV Total energy + Delta-G solvation = -3854.041814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.64592 -39.94814 -38.90000 -36.85480 -35.01752 -33.89301 -32.47534 -31.55079 -29.41903 -28.63798 -27.56352 -26.35874 -25.65210 -24.51170 -22.30887 -21.28512 -20.73403 -20.23483 -19.13287 -17.98427 -17.50105 -17.16594 -16.57474 -16.23099 -16.04574 -15.42286 -15.22432 -15.15766 -14.99261 -14.79450 -14.11752 -14.04933 -13.98360 -13.66366 -13.52874 -13.42797 -13.10818 -12.84713 -12.78379 -12.27670 -12.10992 -12.02495 -11.98563 -11.80080 -11.35527 -11.30617 -11.11697 -11.04226 -10.66426 -10.17094 -9.90578 -9.75086 -9.69676 -9.34472 -9.22413 -9.06397 -9.02989 -8.56113 -6.96994 -6.32299 -4.04868 1.90487 2.18406 2.43780 2.63943 2.79014 3.17592 3.30530 3.46720 3.56098 3.71163 3.88655 3.99345 4.06967 4.29422 4.38527 4.52841 4.55558 4.62036 4.64766 4.77560 4.81314 4.99160 5.02954 5.06664 5.10201 5.13347 5.17320 5.22591 5.33106 5.39938 5.46477 5.52476 5.59182 5.60743 5.68430 5.77746 5.94079 6.13791 6.28239 6.31650 6.35851 6.60767 6.68122 7.39350 7.77884 7.90564 8.30705 8.38328 9.13527 10.76876 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020509 B = 0.002066 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.909011 B =13548.273332 C =14256.655659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.141 4.141 3 C 0.046 3.954 4 N -0.464 5.464 5 C -0.022 4.022 6 C 0.128 3.872 7 N -0.612 5.612 8 C 0.095 3.905 9 C 0.137 3.863 10 H 0.122 0.878 11 N -0.730 5.730 12 C 0.535 3.465 13 O -0.514 6.514 14 C -0.125 4.125 15 S -0.140 6.140 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.879 5.879 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.170 4.170 25 C 0.523 3.477 26 O -0.529 6.529 27 C -0.014 4.014 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.402 0.598 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.271 0.729 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.336 -13.918 -22.936 28.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.160 4.160 3 C -0.082 4.082 4 N -0.186 5.186 5 C -0.151 4.151 6 C 0.025 3.975 7 N -0.346 5.346 8 C -0.029 4.029 9 C 0.031 3.969 10 H 0.140 0.860 11 N -0.385 5.385 12 C 0.321 3.679 13 O -0.388 6.388 14 C -0.276 4.276 15 S 0.086 5.914 16 C -0.670 4.670 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.211 4.211 25 C 0.312 3.688 26 O -0.405 6.405 27 C -0.144 4.144 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.144 0.856 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.236 0.764 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.108 0.892 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.645 -12.911 -23.625 28.951 hybrid contribution -0.947 -0.328 0.476 1.109 sum 9.698 -13.238 -23.149 28.376 Atomic orbital electron populations 1.23903 0.95964 1.01993 1.00984 1.22781 0.95480 0.98181 0.99534 1.21815 0.95405 0.95943 0.95032 1.68817 1.11933 1.33698 1.04183 1.24598 0.97742 0.97401 0.95350 1.22636 0.99197 0.80182 0.95530 1.48248 1.29521 1.10155 1.46629 1.22493 0.92948 0.93880 0.93544 1.21744 0.93577 0.97838 0.83760 0.86031 1.46000 1.59036 1.11615 1.21823 1.20337 0.78877 0.84385 0.84256 1.90714 1.51202 1.22330 1.74533 1.23284 1.02646 1.05433 0.96229 1.84786 1.74187 1.08298 1.24108 1.22302 1.40312 0.98810 1.05578 0.89357 1.24723 0.93461 0.99241 0.93925 1.69932 1.36331 1.35774 1.09522 0.86730 0.81634 0.84669 0.78776 1.19198 1.19920 1.15930 1.22884 1.03802 0.95647 0.98768 1.20963 0.80285 0.87240 0.80312 1.90653 1.34499 1.80217 1.35173 1.24308 0.99457 0.93834 0.96767 0.88249 0.88654 0.86970 0.90214 0.92356 0.87762 0.89567 0.85620 0.89140 0.89213 0.76368 0.88407 0.88294 0.91896 0.87153 0.86759 0.89246 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 14.32 29.01 0.42 -1.06 16 2 C -0.14 -1.15 9.85 -36.03 -0.35 -1.51 16 3 C 0.05 0.40 5.25 -4.98 -0.03 0.37 16 4 N -0.46 -4.00 6.32 -246.15 -1.55 -5.55 16 5 C -0.02 -0.19 7.11 -7.56 -0.05 -0.25 16 6 C 0.13 0.90 5.00 -67.72 -0.34 0.56 16 7 N -0.61 -4.48 3.17 -164.53 -0.52 -5.00 16 8 C 0.09 0.51 6.97 -3.12 -0.02 0.49 16 9 C 0.14 1.13 3.53 -66.29 -0.23 0.89 16 10 H 0.12 1.06 7.54 -51.93 -0.39 0.67 16 11 N -0.73 -7.56 5.12 -52.22 -0.27 -7.82 16 12 C 0.54 8.33 7.85 -10.99 -0.09 8.25 16 13 O -0.51 -9.84 15.50 5.55 0.09 -9.76 16 14 C -0.13 -2.25 6.16 36.00 0.22 -2.02 16 15 S -0.14 -3.41 18.55 -107.50 -1.99 -5.40 16 16 C -0.52 -14.70 10.04 30.94 0.31 -14.39 16 17 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 18 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 19 N -0.88 -26.17 13.97 55.49 0.78 -25.40 16 20 Si 0.86 21.36 27.74 -169.99 -4.71 16.65 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 24 C -0.17 -1.54 6.58 -26.74 -0.18 -1.72 16 25 C 0.52 5.27 7.49 -10.86 -0.08 5.19 16 26 O -0.53 -7.07 14.48 5.56 0.08 -6.99 16 27 C -0.01 -0.10 7.24 -7.55 -0.05 -0.16 16 28 H 0.10 0.64 8.06 -52.48 -0.42 0.22 16 29 H 0.10 0.76 7.84 -52.49 -0.41 0.35 16 30 H 0.11 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.06 0.58 6.95 -51.93 -0.36 0.22 16 33 H 0.10 1.19 4.72 -51.93 -0.25 0.94 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.13 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.39 8.08 -51.93 -0.42 -0.03 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.40 3.34 8.66 -40.82 -0.35 2.99 16 39 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 40 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.11 1.23 8.09 -51.93 -0.42 0.81 16 43 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.71 7.11 -51.93 -0.37 0.34 16 LS Contribution 385.22 15.07 5.81 5.81 Total: -1.00 -34.38 385.22 -9.65 -44.03 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.77 Total: 2.13 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -0.58 Total: -2.70 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -1.57 Total: -43.77 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.17 Total: -16.74 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.65 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.40 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.38 -9.65 -44.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108510839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.687 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds