Wall clock time and date at job start Wed Apr 1 2020 01:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46894 * 109.47344 * 124.99670 * 3 2 1 5 5 C 1.47470 * 111.00372 * 265.97290 * 4 3 2 6 6 C 1.53505 * 87.93446 * 221.29527 * 5 4 3 7 7 N 1.46507 * 114.17291 * 139.66981 * 6 5 4 8 8 C 1.46766 * 124.34854 * 146.16053 * 7 6 5 9 9 C 1.54485 * 105.47122 * 197.01655 * 8 7 6 10 10 H 1.08994 * 110.97005 * 216.46624 * 9 8 7 11 11 N 1.46499 * 110.96760 * 92.70079 * 9 8 7 12 12 C 1.34777 * 119.99954 * 154.99937 * 11 9 8 13 13 O 1.21289 * 119.99667 * 0.02562 * 12 11 9 14 14 C 1.50692 * 120.00262 * 180.02562 * 12 11 9 15 15 S 1.81003 * 109.47213 * 180.02562 * 14 12 11 16 16 C 1.76200 * 99.99868 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00271 * 359.97438 * 16 15 14 18 18 C 1.38804 * 119.99711 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99966 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99997 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47321 * 90.00441 * 20 18 16 22 22 H 1.48502 * 109.47051 * 210.00164 * 20 18 16 23 23 H 1.48501 * 109.47118 * 329.99848 * 20 18 16 24 24 C 1.54630 * 101.76347 * 334.58460 * 9 8 7 25 25 C 1.34421 * 124.34586 * 325.86093 * 7 6 5 26 26 O 1.21278 * 124.94386 * 359.57364 * 25 7 6 27 27 C 1.47483 * 111.00165 * 169.99918 * 4 3 2 28 28 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 30 30 H 1.07999 * 120.00108 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47249 * 245.00440 * 3 2 1 32 32 H 1.09006 * 109.47239 * 4.99581 * 3 2 1 33 33 H 1.08997 * 113.47960 * 336.06278 * 5 4 3 34 34 H 1.09001 * 113.48140 * 106.53058 * 5 4 3 35 35 H 1.09000 * 114.17645 * 272.37602 * 6 5 4 36 36 H 1.09000 * 110.24596 * 316.01192 * 8 7 6 37 37 H 1.08994 * 110.24729 * 77.93377 * 8 7 6 38 38 H 0.96994 * 120.00170 * 335.00173 * 11 9 8 39 39 H 1.09003 * 109.47490 * 300.00103 * 14 12 11 40 40 H 1.08992 * 109.47340 * 60.00073 * 14 12 11 41 41 H 0.96997 * 120.00699 * 180.02562 * 19 18 16 42 42 H 1.09002 * 110.48248 * 143.47673 * 24 9 8 43 43 H 1.08995 * 110.48587 * 265.98442 * 24 9 8 44 44 H 1.09001 * 113.47363 * 253.47600 * 27 4 3 45 45 H 1.08998 * 113.47317 * 23.93551 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3321 1.1345 5 6 2.3871 1.9925 2.3040 6 6 3.7360 2.6842 2.5461 7 7 3.6261 4.0872 2.9534 8 6 4.5482 4.7553 3.8794 9 6 3.8144 6.0342 4.3405 10 1 4.5128 6.8619 4.4630 11 7 3.0680 5.7931 5.5778 12 6 2.7884 6.8184 6.4067 13 8 3.1544 7.9406 6.1281 14 6 2.0211 6.5704 7.6797 15 16 1.8062 8.1324 8.5687 16 6 0.9062 7.5639 9.9728 17 1 0.6585 6.5171 10.0679 18 6 0.5146 8.4619 10.9562 19 7 -0.1581 8.0373 12.0049 20 14 0.9424 10.2727 10.7913 21 1 -0.1469 10.9746 10.0661 22 1 1.1018 10.8686 12.1422 23 1 2.2123 10.4145 10.0348 24 6 2.8541 6.2911 3.1560 25 6 2.6712 4.9294 2.5225 26 8 1.7898 4.6393 1.7416 27 6 3.9161 2.4806 1.0353 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9352 0.0044 30 1 1.8501 -0.9353 -0.0004 31 1 2.6213 1.4027 -0.9314 32 1 1.3586 2.1317 0.0895 33 1 1.5853 2.6834 2.0438 34 1 2.1062 1.2992 3.0968 35 1 4.4290 2.1087 3.1598 36 1 4.7569 4.1115 4.7338 37 1 5.4749 5.0144 3.3675 38 1 2.7750 4.8957 5.8004 39 1 1.0436 6.1522 7.4393 40 1 2.5724 5.8687 8.3055 41 1 -0.4322 8.6648 12.6920 42 1 1.9009 6.6790 3.5150 43 1 3.3031 6.9837 2.4442 44 1 4.9311 2.2008 0.7528 45 1 3.5224 3.3018 0.4364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108510839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:10 Heat of formation + Delta-G solvation = -24.091729 kcal Electronic energy + Delta-G solvation = -26522.413908 eV Core-core repulsion = 22667.212298 eV Total energy + Delta-G solvation = -3855.201610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.34216 -40.86333 -39.86326 -37.72092 -35.73233 -34.78791 -34.65470 -32.45069 -30.57661 -29.35627 -28.29999 -27.81846 -27.00330 -25.17391 -23.12548 -21.96018 -21.80030 -20.90040 -19.92976 -19.81367 -18.25717 -17.98134 -17.80574 -17.10111 -16.94815 -16.78884 -16.44493 -16.24290 -15.94129 -15.60877 -15.50495 -14.95508 -14.88995 -14.71819 -14.61063 -14.32260 -14.25596 -13.90124 -13.57487 -13.38440 -13.32483 -13.01556 -12.91668 -12.79223 -12.63033 -12.59283 -12.42365 -11.99148 -11.85474 -11.74198 -11.16381 -11.02766 -10.95656 -10.52666 -10.39230 -10.24881 -9.95637 -9.74072 -8.97806 -8.50646 -6.21114 0.99887 1.27133 1.32815 1.41006 1.47526 1.54068 1.56852 1.82947 2.18000 2.26053 2.71726 2.87716 3.08497 3.23261 3.36447 3.42558 3.68988 3.85024 3.89554 3.93160 3.98230 4.19774 4.20767 4.25550 4.35364 4.48660 4.49599 4.55266 4.60313 4.64101 4.67303 4.73215 4.79570 4.84402 4.86203 4.98071 5.12040 5.39527 5.53327 5.64182 5.71357 5.73252 5.94011 6.01973 6.12593 6.39733 6.94475 7.04435 7.15521 8.61693 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020509 B = 0.002066 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.909011 B =13548.273332 C =14256.655659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.147 4.147 3 C 0.048 3.952 4 N -0.465 5.465 5 C -0.027 4.027 6 C 0.138 3.862 7 N -0.602 5.602 8 C 0.103 3.897 9 C 0.136 3.864 10 H 0.124 0.876 11 N -0.707 5.707 12 C 0.543 3.457 13 O -0.552 6.552 14 C -0.115 4.115 15 S -0.172 6.172 16 C -0.529 4.529 17 H 0.061 0.939 18 C 0.043 3.957 19 N -0.918 5.918 20 Si 0.915 3.085 21 H -0.264 1.264 22 H -0.261 1.261 23 H -0.233 1.233 24 C -0.167 4.167 25 C 0.518 3.482 26 O -0.569 6.569 27 C -0.011 4.011 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.157 0.843 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.415 0.585 39 H 0.108 0.892 40 H 0.117 0.883 41 H 0.276 0.724 42 H 0.087 0.913 43 H 0.130 0.870 44 H 0.109 0.891 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.766 -14.789 -23.825 30.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.166 4.166 3 C -0.080 4.080 4 N -0.187 5.187 5 C -0.156 4.156 6 C 0.035 3.965 7 N -0.335 5.335 8 C -0.019 4.019 9 C 0.031 3.969 10 H 0.142 0.858 11 N -0.361 5.361 12 C 0.329 3.671 13 O -0.430 6.430 14 C -0.266 4.266 15 S 0.055 5.945 16 C -0.677 4.677 17 H 0.079 0.921 18 C -0.162 4.162 19 N -0.556 5.556 20 Si 0.737 3.263 21 H -0.189 1.189 22 H -0.185 1.185 23 H -0.157 1.157 24 C -0.208 4.208 25 C 0.307 3.693 26 O -0.449 6.449 27 C -0.141 4.141 28 H 0.132 0.868 29 H 0.106 0.894 30 H 0.139 0.861 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.175 0.825 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.252 0.748 39 H 0.126 0.874 40 H 0.135 0.865 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.148 0.852 44 H 0.128 0.872 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.105 -13.837 -24.519 31.055 hybrid contribution -1.716 -0.220 0.643 1.846 sum 11.389 -14.057 -23.876 29.956 Atomic orbital electron populations 1.24013 0.96038 1.02341 1.00620 1.22850 0.95636 0.98185 0.99884 1.21773 0.95213 0.95551 0.95484 1.68828 1.11909 1.34008 1.03952 1.24513 0.98191 0.97285 0.95638 1.22784 0.98237 0.79853 0.95657 1.48275 1.28996 1.10121 1.46095 1.22667 0.92716 0.92411 0.94116 1.21935 0.93166 0.99836 0.81974 0.85775 1.45768 1.57826 1.10973 1.21492 1.19838 0.78552 0.84750 0.83984 1.90709 1.53013 1.23953 1.75298 1.23290 1.04194 1.01875 0.97207 1.84660 1.73444 1.13105 1.23310 1.22476 1.40370 0.97717 1.07126 0.92053 1.25602 0.93460 1.03441 0.93724 1.70017 1.37646 1.37433 1.10492 0.85849 0.81427 0.79677 0.79306 1.18906 1.18494 1.15680 1.22844 1.03025 0.95547 0.99427 1.21123 0.80309 0.87875 0.80000 1.90650 1.36287 1.80875 1.37050 1.24281 0.99960 0.92866 0.96996 0.86806 0.89449 0.86089 0.89615 0.94472 0.90553 0.89334 0.82513 0.86759 0.86070 0.74806 0.87412 0.86504 0.91419 0.89492 0.85217 0.87244 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.94 14.32 67.78 0.97 -1.97 16 2 C -0.15 -2.32 9.85 25.64 0.25 -2.07 16 3 C 0.05 0.83 5.25 85.56 0.45 1.28 16 4 N -0.47 -7.44 6.32 -932.67 -5.89 -13.33 16 5 C -0.03 -0.45 7.11 83.57 0.59 0.14 16 6 C 0.14 1.54 5.00 45.44 0.23 1.76 16 7 N -0.60 -7.11 3.17 -793.05 -2.52 -9.62 16 8 C 0.10 0.65 6.97 86.83 0.61 1.25 16 9 C 0.14 1.84 3.53 46.05 0.16 2.00 16 10 H 0.12 1.78 7.54 -2.39 -0.02 1.76 16 11 N -0.71 -12.75 5.12 -437.53 -2.24 -14.99 16 12 C 0.54 15.96 7.85 87.65 0.69 16.64 16 13 O -0.55 -20.48 15.50 -3.06 -0.05 -20.53 16 14 C -0.11 -3.96 6.16 71.23 0.44 -3.53 16 15 S -0.17 -8.29 18.55 -56.49 -1.05 -9.34 16 16 C -0.53 -30.15 10.04 67.96 0.68 -29.47 16 17 H 0.06 3.70 8.03 -2.91 -0.02 3.67 16 18 C 0.04 2.49 5.50 84.86 0.47 2.96 16 19 N -0.92 -55.40 13.97 21.65 0.30 -55.09 16 20 Si 0.92 44.19 27.74 68.60 1.90 46.09 16 21 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.23 -11.08 6.74 99.48 0.67 -10.41 16 24 C -0.17 -2.81 6.58 30.59 0.20 -2.61 16 25 C 0.52 9.87 7.49 87.90 0.66 10.53 16 26 O -0.57 -15.55 14.48 -3.02 -0.04 -15.59 16 27 C -0.01 -0.15 7.24 83.57 0.60 0.46 16 28 H 0.11 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.09 1.46 7.84 -2.91 -0.02 1.43 16 30 H 0.12 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 32 H 0.04 0.80 6.95 -2.38 -0.02 0.78 16 33 H 0.08 1.79 4.72 -2.39 -0.01 1.78 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.16 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.11 0.32 8.08 -2.39 -0.02 0.30 16 37 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.41 5.55 8.66 -92.71 -0.80 4.74 16 39 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 40 H 0.12 3.63 8.14 -2.40 -0.02 3.61 16 41 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.09 1.92 8.09 -2.39 -0.02 1.90 16 43 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 1.02 7.11 -2.39 -0.02 1.00 16 Total: -1.00 -77.30 385.22 -2.42 -79.72 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.16 Total: 15.29 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 7.00 Total: -2.62 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -10.35 Total: -93.03 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.09 Total: -36.12 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.90 Total: 46.09 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.05 Total: -9.34 kcal Total: -77.30 -2.42 -79.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108510839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.631 kcal (2) G-P(sol) polarization free energy of solvation -77.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds