Wall clock time and date at job start Tue Mar 31 2020 23:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.50698 * 109.47184 * 239.99667 * 2 1 3 6 6 C 1.33648 * 122.74502 * 75.00369 * 5 2 1 7 7 S 1.76196 * 107.92039 * 180.02562 * 6 5 2 8 8 C 1.70972 * 90.28429 * 0.02562 * 7 6 5 9 9 C 1.50703 * 124.91750 * 180.02562 * 8 7 6 10 10 N 1.46506 * 109.46851 * 269.97618 * 9 8 7 11 11 C 1.34771 * 119.99978 * 180.02562 * 10 9 8 12 12 O 1.21349 * 120.00271 * 359.97438 * 11 10 9 13 13 C 1.49445 * 120.00124 * 179.97438 * 11 10 9 14 14 O 1.21356 * 120.00164 * 359.97438 * 13 11 10 15 15 N 1.34780 * 120.00227 * 179.97438 * 13 11 10 16 16 C 1.46508 * 120.00206 * 179.97438 * 15 13 11 17 17 C 1.52997 * 109.47128 * 179.97438 * 16 15 13 18 18 C 1.50695 * 109.47016 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00170 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00120 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99892 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00048 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46934 * 60.00595 * 22 20 18 24 24 H 1.48505 * 109.47038 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47315 * 300.00261 * 22 20 18 26 26 N 1.29029 * 110.16899 * 359.73076 * 8 7 6 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 31 31 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 33 33 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 34 34 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 36 36 H 1.07999 * 126.03855 * 0.02562 * 6 5 2 37 37 H 1.09001 * 109.47165 * 29.97171 * 9 8 7 38 38 H 1.08994 * 109.47341 * 149.97454 * 9 8 7 39 39 H 0.96996 * 119.99691 * 359.97438 * 10 9 8 40 40 H 0.96996 * 120.00227 * 359.97438 * 15 13 11 41 41 H 1.09001 * 109.47123 * 300.00083 * 16 15 13 42 42 H 1.09002 * 109.46640 * 60.00178 * 16 15 13 43 43 H 1.09001 * 109.47319 * 300.00126 * 17 16 15 44 44 H 1.08998 * 109.47166 * 59.99852 * 17 16 15 45 45 H 0.96996 * 120.00133 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 1.9992 -0.1595 -2.4476 7 16 2.6762 -1.3204 -3.5869 8 6 2.9360 -2.4314 -2.3136 9 6 3.5415 -3.8021 -2.4748 10 7 2.4795 -4.7777 -2.7335 11 6 2.7875 -6.0776 -2.9115 12 8 3.9444 -6.4399 -2.8579 13 6 1.7043 -7.0729 -3.1748 14 8 0.5472 -6.7107 -3.2279 15 7 2.0123 -8.3728 -3.3533 16 6 0.9502 -9.3486 -3.6109 17 6 1.5650 -10.7399 -3.7754 18 6 0.4727 -11.7435 -4.0410 19 1 -0.5571 -11.4212 -4.0882 20 6 0.7878 -13.0732 -4.2248 21 7 2.0418 -13.4657 -4.1678 22 14 -0.5663 -14.3173 -4.5533 23 1 -1.2896 -13.9451 -5.7957 24 1 0.0304 -15.6678 -4.7131 25 1 -1.5161 -14.3282 -3.4118 26 7 2.5442 -1.9242 -1.1938 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2493 34 1 3.1300 -0.7217 1.2491 35 1 1.6766 -0.2074 2.1393 36 1 1.6236 0.8237 -2.6899 37 1 4.2398 -3.7947 -3.3117 38 1 4.0711 -4.0749 -1.5621 39 1 1.5548 -4.4881 -2.7759 40 1 2.9370 -8.6623 -3.3113 41 1 0.2526 -9.3559 -2.7735 42 1 0.4199 -9.0759 -4.5234 43 1 2.2624 -10.7323 -4.6131 44 1 2.0957 -11.0128 -2.8633 45 1 2.2636 -14.4010 -4.2975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117313883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:46 Heat of formation + Delta-G solvation = -67.534330 kcal Electronic energy + Delta-G solvation = -25692.196790 eV Core-core repulsion = 21835.111367 eV Total energy + Delta-G solvation = -3857.085423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 12.66 seconds Orbital eigenvalues (eV) -41.81209 -41.29673 -39.69809 -37.51246 -36.88747 -35.91131 -34.80090 -31.74959 -31.59267 -29.42499 -28.14408 -27.87405 -27.18310 -25.51243 -24.40192 -22.82557 -21.90656 -21.53223 -20.24310 -19.74696 -18.58853 -18.22200 -17.94050 -17.22484 -16.93707 -16.62874 -16.50682 -16.11329 -16.02009 -15.70593 -15.20412 -14.98167 -14.78570 -14.65027 -14.51614 -14.29679 -14.13299 -13.58519 -13.26572 -13.22031 -13.09011 -12.94148 -12.92719 -12.89408 -12.56055 -12.54579 -12.27078 -11.90628 -11.86096 -11.69651 -11.68777 -11.45819 -10.85484 -10.70327 -10.60586 -10.51536 -10.42586 -10.21660 -9.79463 -8.22759 -6.33984 -0.47225 0.26273 0.29752 0.69015 1.20669 1.43659 1.45815 1.53842 1.77386 2.06740 2.40341 2.65598 2.82118 3.12072 3.37570 3.58571 3.86890 4.05504 4.08257 4.25040 4.32967 4.38598 4.43701 4.45215 4.48120 4.76984 4.80160 4.81304 4.88165 4.88899 4.92727 5.01930 5.03023 5.06260 5.16556 5.33381 5.40483 5.42266 5.45742 5.55443 5.73990 5.82525 6.13253 6.27186 6.60858 6.69815 6.78939 6.88033 7.35382 8.88912 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.001735 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.819459 B =16137.231643 C =16532.365667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.002 3.998 3 C -0.135 4.135 4 C -0.127 4.127 5 C 0.060 3.940 6 C -0.243 4.243 7 S 0.183 5.817 8 C -0.003 4.003 9 C 0.201 3.799 10 N -0.686 5.686 11 C 0.522 3.478 12 O -0.533 6.533 13 C 0.502 3.498 14 O -0.549 6.549 15 N -0.686 5.686 16 C 0.138 3.862 17 C 0.018 3.982 18 C -0.546 4.546 19 H 0.065 0.935 20 C 0.005 3.995 21 N -0.927 5.927 22 Si 0.967 3.033 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.268 1.268 26 N -0.466 5.466 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.204 0.796 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.418 0.582 40 H 0.416 0.584 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.009 0.991 44 H 0.008 0.992 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.332 34.541 5.336 34.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.001 4.001 3 C -0.193 4.193 4 C -0.185 4.185 5 C -0.073 4.073 6 C -0.382 4.382 7 S 0.438 5.562 8 C -0.279 4.279 9 C 0.075 3.925 10 N -0.340 5.340 11 C 0.302 3.698 12 O -0.409 6.409 13 C 0.282 3.718 14 O -0.428 6.428 15 N -0.338 5.338 16 C 0.015 3.985 17 C -0.019 4.019 18 C -0.584 4.584 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.566 5.566 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.193 1.193 26 N -0.182 5.182 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.221 0.779 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.255 0.745 40 H 0.252 0.748 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.027 0.973 44 H 0.026 0.974 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.733 34.027 4.689 34.392 hybrid contribution -0.635 -0.726 0.627 1.150 sum 1.099 33.301 5.315 33.740 Atomic orbital electron populations 1.21877 0.92547 1.01628 1.03271 1.19287 0.96008 0.95042 0.89725 1.21906 1.00964 0.92926 1.03496 1.21675 1.00527 0.99906 0.96353 1.20478 1.00443 0.90000 0.96362 1.27300 1.09359 1.06570 0.94985 1.84024 1.53962 1.06409 1.11832 1.26682 1.06625 1.02027 0.92616 1.19871 0.88395 0.79667 1.04556 1.45647 1.12413 1.05767 1.70217 1.19877 0.88333 0.83597 0.77976 1.90777 1.20537 1.79581 1.50003 1.20222 0.88835 0.83995 0.78708 1.90730 1.21006 1.79737 1.51284 1.46058 1.12931 1.06550 1.68224 1.21495 0.88982 0.87632 1.00391 1.19181 0.96235 0.90090 0.96442 1.21421 0.94146 0.93208 1.49661 0.91715 1.25913 0.97995 1.00702 0.94757 1.70070 1.19037 1.17243 1.50298 0.85464 0.78817 0.77387 0.79158 1.19176 1.20853 1.19277 1.66067 1.11708 1.12207 1.28208 0.91477 0.94069 0.90435 0.90561 0.92971 0.91035 0.93730 0.93534 0.91196 0.77862 0.87067 0.88330 0.74526 0.74790 0.92074 0.91880 0.97256 0.97383 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.43 71.98 0.61 -0.89 16 2 C 0.00 0.03 0.90 -52.93 -0.05 -0.02 16 3 C -0.14 -1.09 8.13 71.98 0.58 -0.50 16 4 C -0.13 -1.89 7.91 71.98 0.57 -1.32 16 5 C 0.06 0.94 5.41 41.52 0.22 1.17 16 6 C -0.24 -2.86 10.40 66.78 0.69 -2.16 16 7 S 0.18 2.32 23.18 -56.49 -1.31 1.01 16 8 C 0.00 -0.05 6.75 88.52 0.60 0.55 16 9 C 0.20 3.71 6.25 85.63 0.54 4.25 16 10 N -0.69 -15.53 5.54 -468.14 -2.59 -18.12 16 11 C 0.52 15.03 7.89 87.27 0.69 15.72 16 12 O -0.53 -17.07 16.48 -3.24 -0.05 -17.12 16 13 C 0.50 17.00 7.89 87.27 0.69 17.68 16 14 O -0.55 -20.49 16.48 -3.27 -0.05 -20.54 16 15 N -0.69 -24.90 5.55 -464.39 -2.58 -27.48 16 16 C 0.14 5.76 5.61 86.38 0.48 6.25 16 17 C 0.02 0.91 5.09 29.85 0.15 1.06 16 18 C -0.55 -30.12 9.11 25.60 0.23 -29.89 16 19 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 20 C 0.01 0.29 5.46 84.65 0.46 0.75 16 21 N -0.93 -54.71 13.29 21.45 0.28 -54.43 16 22 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 N -0.47 -9.25 9.55 -179.40 -1.71 -10.96 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.38 7.15 -2.39 -0.02 0.36 16 33 H 0.04 0.84 7.97 -2.39 -0.02 0.82 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.20 1.18 7.31 -2.91 -0.02 1.16 16 37 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.42 9.16 7.94 -92.71 -0.74 8.42 16 40 H 0.42 14.41 7.94 -92.71 -0.74 13.68 16 41 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 44 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -67.28 396.38 0.03 -67.25 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -0.45 Total: 22.35 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 6.48 Total: 12.65 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -6.60 Total: -110.99 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.11 Total: -37.66 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.31 Total: 1.01 kcal Total: -67.28 0.03 -67.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117313883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.283 kcal (2) G-P(sol) polarization free energy of solvation -67.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.66 seconds