Wall clock time and date at job start Wed Apr 1 2020 01:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.49979 * 109.47204 * 60.28807 * 3 2 1 5 5 C 1.50182 * 105.30986 * 64.98136 * 4 3 2 6 6 C 1.51694 * 113.44406 * 37.18605 * 5 4 3 7 7 N 1.46920 * 111.56904 * 56.32503 * 6 5 4 8 8 C 1.35814 * 118.81438 * 242.85540 * 7 6 5 9 9 O 1.21391 * 121.07146 * 338.44729 * 8 7 6 10 10 C 1.50865 * 118.83932 * 159.47054 * 8 7 6 11 11 C 1.52867 * 109.53494 * 260.95284 * 10 8 7 12 12 N 1.47438 * 110.17474 * 89.01992 * 11 10 8 13 13 C 1.35036 * 121.79772 * 75.31715 * 12 11 10 14 14 O 1.21281 * 119.99935 * 179.39376 * 13 12 11 15 15 C 1.50700 * 120.00057 * 359.39334 * 13 12 11 16 16 S 1.81004 * 109.47345 * 179.97438 * 15 13 12 17 17 C 1.76194 * 100.00048 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00136 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99819 * 180.02562 * 17 16 15 20 20 N 1.31633 * 119.99726 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00108 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.46947 * 90.00217 * 21 19 17 23 23 H 1.48504 * 109.46940 * 210.00234 * 21 19 17 24 24 H 1.48501 * 109.46896 * 330.00118 * 21 19 17 25 25 C 1.48379 * 117.48113 * 254.72835 * 12 11 10 26 26 C 1.49175 * 108.22281 * 176.43634 * 4 3 2 27 27 H 4.42785 * 5.57841 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.46940 * 300.28574 * 3 2 1 29 29 H 1.09000 * 109.46702 * 180.28140 * 3 2 1 30 30 H 1.09145 * 107.11475 * 275.50954 * 5 4 3 31 31 H 1.09183 * 106.99171 * 158.82365 * 5 4 3 32 32 H 1.08438 * 112.92878 * 289.49719 * 6 5 4 33 33 H 1.11087 * 107.66909 * 173.47442 * 6 5 4 34 34 H 0.97822 * 120.95290 * 64.10729 * 7 6 5 35 35 H 1.08843 * 109.35795 * 21.82715 * 10 8 7 36 36 H 1.09207 * 109.20677 * 141.21740 * 10 8 7 37 37 H 1.09065 * 109.70967 * 327.88687 * 11 10 8 38 38 H 1.09454 * 109.05954 * 208.81689 * 11 10 8 39 39 H 1.09003 * 109.47277 * 300.00504 * 15 13 12 40 40 H 1.09010 * 109.46866 * 60.00046 * 15 13 12 41 41 H 0.96999 * 119.99632 * 180.02562 * 20 19 17 42 42 H 1.07539 * 110.23745 * 322.17357 * 25 12 11 43 43 H 1.10765 * 106.81955 * 206.77412 * 25 12 11 44 44 H 1.10539 * 105.87516 * 163.56910 * 26 4 3 45 45 H 1.07940 * 110.13025 * 278.72973 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1463 -0.7000 -1.2281 5 6 2.7005 0.1534 -2.3808 6 6 2.7663 1.6410 -2.0912 7 7 4.1163 2.0526 -1.6830 8 6 4.2964 2.5624 -0.4371 9 8 3.3694 3.0394 0.1847 10 6 5.6813 2.5494 0.1612 11 6 5.8156 1.3609 1.1132 12 7 6.2829 0.1711 0.3785 13 6 7.5677 0.0368 -0.0149 14 8 7.9191 -0.9609 -0.6081 15 6 8.5648 1.1268 0.2832 16 16 10.1871 0.6543 -0.3657 17 6 11.1294 2.0654 0.1092 18 1 10.6551 2.8780 0.6393 19 6 12.4810 2.1330 -0.1989 20 7 13.1851 3.1870 0.1564 21 14 13.3013 0.7278 -1.1165 22 1 13.2100 0.9712 -2.5785 23 1 14.7291 0.6424 -0.7170 24 1 12.6169 -0.5473 -0.7832 25 6 5.2878 -0.8921 0.0934 26 6 4.6350 -0.6071 -1.2443 27 1 -1.0499 -0.0002 0.0000 28 1 3.0095 -0.5174 0.8874 29 1 3.0088 1.0285 0.0050 30 1 1.6756 -0.1373 -2.6181 31 1 3.3438 -0.0932 -3.2278 32 1 2.0151 1.9666 -1.3802 33 1 2.5338 2.1788 -3.0351 34 1 4.8723 1.9803 -2.2995 35 1 6.4183 2.4773 -0.6364 36 1 5.8421 3.4767 0.7151 37 1 4.8526 1.1539 1.5814 38 1 6.5414 1.6088 1.8942 39 1 8.2406 2.0546 -0.1882 40 1 8.6333 1.2716 1.3614 41 1 14.1296 3.2344 -0.0593 42 1 4.6167 -1.0062 0.9258 43 1 5.8500 -1.8427 0.0083 44 1 4.9776 -1.3684 -1.9689 45 1 4.9432 0.3528 -1.6298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131329349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:51 Heat of formation + Delta-G solvation = 6.886438 kcal Electronic energy + Delta-G solvation = -28473.709476 eV Core-core repulsion = 24619.851180 eV Total energy + Delta-G solvation = -3853.858296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.95900 -40.52868 -38.95944 -37.04233 -35.42916 -34.63974 -34.02782 -32.38712 -31.89677 -30.39305 -28.87632 -27.84565 -27.01677 -25.50176 -23.65349 -22.10473 -21.63401 -20.63440 -19.56366 -19.09076 -18.50314 -18.12354 -17.84107 -17.15474 -17.05843 -16.72425 -16.68954 -16.29555 -15.81977 -15.66458 -15.39488 -14.92367 -14.80900 -14.72348 -14.28454 -14.12670 -13.91491 -13.71934 -13.56601 -13.43514 -13.31365 -13.09410 -12.96559 -12.83111 -12.61537 -12.52218 -12.16725 -11.87621 -11.83602 -11.44827 -11.16265 -11.12324 -11.07739 -10.94580 -10.53827 -10.47260 -9.88736 -9.35178 -8.95828 -8.48748 -6.18643 0.99333 1.27140 1.32923 1.46379 1.53242 1.54801 1.77682 1.90329 1.97200 2.11049 2.26580 2.70557 2.90028 3.07376 3.45730 3.47816 3.57325 3.74474 3.85042 3.92144 3.98099 4.02456 4.06712 4.16445 4.28273 4.32039 4.40793 4.45503 4.46697 4.57749 4.69487 4.76439 4.82388 4.85529 4.86933 4.97031 5.13512 5.25976 5.30626 5.55643 5.68731 5.73794 6.15292 6.17510 6.33183 6.71485 6.96261 6.97124 7.05826 8.63334 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022191 B = 0.002965 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.475726 B = 9440.295282 C = 9891.571200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.210 4.210 3 C 0.098 3.902 4 N -0.459 5.459 5 C 0.006 3.994 6 C 0.083 3.917 7 N -0.733 5.733 8 C 0.525 3.475 9 O -0.559 6.559 10 C -0.168 4.168 11 C 0.115 3.885 12 N -0.608 5.608 13 C 0.544 3.456 14 O -0.551 6.551 15 C -0.110 4.110 16 S -0.175 6.175 17 C -0.524 4.524 18 H 0.065 0.935 19 C 0.046 3.954 20 N -0.918 5.918 21 Si 0.911 3.089 22 H -0.263 1.263 23 H -0.264 1.264 24 H -0.236 1.236 25 C 0.110 3.890 26 C -0.006 4.006 27 H 0.245 0.755 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.420 0.580 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.276 0.724 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.070 -4.130 -2.547 25.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.210 4.210 3 C -0.028 4.028 4 N -0.182 5.182 5 C -0.124 4.124 6 C -0.042 4.042 7 N -0.390 5.390 8 C 0.315 3.685 9 O -0.438 6.438 10 C -0.209 4.209 11 C -0.008 4.008 12 N -0.343 5.343 13 C 0.332 3.668 14 O -0.428 6.428 15 C -0.261 4.261 16 S 0.051 5.949 17 C -0.671 4.671 18 H 0.083 0.917 19 C -0.160 4.160 20 N -0.556 5.556 21 Si 0.734 3.266 22 H -0.187 1.187 23 H -0.188 1.188 24 H -0.160 1.160 25 C -0.012 4.012 26 C -0.135 4.135 27 H 0.261 0.739 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.261 0.739 35 H 0.115 0.885 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.085 0.915 42 H 0.124 0.876 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.192 -5.887 -3.008 26.046 hybrid contribution 0.877 1.869 0.191 2.073 sum -24.315 -4.019 -2.817 24.805 Atomic orbital electron populations 1.25626 0.96673 0.99934 0.98668 1.23004 0.94638 1.01307 1.02089 1.20489 0.85959 1.00309 0.96037 1.69430 1.06133 1.40718 1.01905 1.23312 1.03599 0.90250 0.95212 1.21796 0.84361 0.95258 1.02785 1.46699 1.11832 1.65217 1.15293 1.21191 0.91134 0.74843 0.81367 1.90765 1.46530 1.43691 1.62786 1.22492 0.93983 1.02520 1.01949 1.21827 1.03021 0.82566 0.93385 1.48776 1.07330 1.20808 1.57417 1.19941 0.82323 0.86720 0.77834 1.90709 1.78609 1.31807 1.41678 1.23393 0.95343 1.01188 1.06130 1.84769 1.04003 1.28936 1.77168 1.22451 0.97431 1.04514 1.42753 0.91674 1.25531 0.96982 0.97972 0.95494 1.70018 1.09048 1.29966 1.46545 0.85906 0.79324 0.81465 0.79928 1.18730 1.18846 1.15964 1.21747 0.91521 0.90822 0.97154 1.23461 0.88398 1.04098 0.97562 0.73852 0.88761 0.89611 0.88714 0.89234 0.89811 0.89429 0.73944 0.88472 0.85646 0.87922 0.87537 0.86420 0.86951 0.91504 0.87618 0.91133 0.91031 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.00 19.25 74.32 1.43 -1.57 16 2 C -0.21 -4.02 11.54 31.13 0.36 -3.66 16 3 C 0.10 1.77 4.34 83.90 0.36 2.13 16 4 N -0.46 -7.81 6.15 -887.20 -5.45 -13.27 16 5 C 0.01 0.08 5.15 85.23 0.44 0.51 16 6 C 0.08 1.13 5.33 85.87 0.46 1.59 16 7 N -0.73 -10.36 3.09 -460.69 -1.42 -11.78 16 8 C 0.53 9.46 4.90 87.54 0.43 9.89 16 9 O -0.56 -13.84 15.62 -3.37 -0.05 -13.89 16 10 C -0.17 -2.61 5.60 29.86 0.17 -2.44 16 11 C 0.11 1.79 5.40 86.16 0.46 2.26 16 12 N -0.61 -12.58 2.45 -815.94 -2.00 -14.58 16 13 C 0.54 16.32 7.46 87.62 0.65 16.98 16 14 O -0.55 -21.07 15.38 -3.03 -0.05 -21.12 16 15 C -0.11 -3.65 4.88 71.24 0.35 -3.30 16 16 S -0.18 -8.24 18.55 -56.49 -1.05 -9.29 16 17 C -0.52 -28.87 10.04 67.95 0.68 -28.19 16 18 H 0.07 3.77 8.03 -2.91 -0.02 3.75 16 19 C 0.05 2.58 5.50 84.86 0.47 3.04 16 20 N -0.92 -54.35 13.97 21.65 0.30 -54.05 16 21 Si 0.91 43.52 27.74 68.60 1.90 45.42 16 22 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.24 -11.20 6.74 99.48 0.67 -10.53 16 25 C 0.11 2.10 5.35 85.54 0.46 2.56 16 26 C -0.01 -0.10 4.70 85.39 0.40 0.30 16 27 H 0.25 1.94 7.80 -4.42 -0.03 1.90 16 28 H 0.09 1.61 6.01 -2.39 -0.01 1.60 16 29 H 0.09 1.61 2.16 -2.39 -0.01 1.60 16 30 H 0.09 1.26 7.84 -2.31 -0.02 1.24 16 31 H 0.09 1.04 7.76 -2.29 -0.02 1.03 16 32 H 0.08 1.52 5.58 -2.68 -0.01 1.50 16 33 H 0.09 0.89 8.31 -1.26 -0.01 0.88 16 34 H 0.42 4.78 7.92 -92.09 -0.73 4.05 16 35 H 0.10 1.52 6.13 -2.47 -0.02 1.50 16 36 H 0.13 1.75 8.16 -2.28 -0.02 1.73 16 37 H 0.10 1.41 7.53 -2.35 -0.02 1.39 16 38 H 0.11 1.48 7.32 -2.15 -0.02 1.46 16 39 H 0.12 3.43 6.28 -2.39 -0.02 3.41 16 40 H 0.11 3.45 7.62 -2.39 -0.02 3.44 16 41 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.11 1.68 5.56 -3.15 -0.02 1.66 16 43 H 0.07 1.67 7.36 -1.44 -0.01 1.66 16 44 H 0.07 1.45 8.27 -1.56 -0.01 1.44 16 45 H 0.09 1.41 3.69 -2.94 -0.01 1.40 16 Total: -1.00 -74.35 360.97 -0.41 -74.75 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.29 Total: 17.70 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 7.12 Total: 0.09 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -8.58 Total: -93.68 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.10 Total: -35.01 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.90 Total: 45.42 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.05 Total: -9.29 kcal Total: -74.35 -0.41 -74.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131329349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.641 kcal (2) G-P(sol) polarization free energy of solvation -74.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds