Wall clock time and date at job start Tue Mar 31 2020 22:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 O 1.21282 * 119.99865 * 240.00203 * 4 2 1 6 6 N 1.34774 * 120.00164 * 59.99708 * 4 2 1 7 7 C 1.46496 * 120.00339 * 180.02562 * 6 4 2 8 8 C 1.52992 * 109.47337 * 179.97438 * 7 6 4 9 9 N 1.46906 * 109.47164 * 179.97438 * 8 7 6 10 10 C 1.46897 * 111.00012 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47093 * 180.02562 * 10 9 8 12 12 O 1.21294 * 120.00135 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99857 * 179.97438 * 11 10 9 14 14 C 1.37096 * 119.99595 * 179.97438 * 13 11 10 15 15 H 1.08005 * 120.00404 * 0.02562 * 14 13 11 16 16 C 1.38951 * 119.99882 * 180.02562 * 14 13 11 17 17 N 1.31419 * 119.99999 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00350 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47031 * 89.99150 * 18 16 14 20 20 H 1.48494 * 109.47357 * 209.99896 * 18 16 14 21 21 H 1.48505 * 109.46632 * 329.99706 * 18 16 14 22 22 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 23 23 C 1.33388 * 125.20204 * 300.00234 * 22 2 1 24 24 C 1.38427 * 114.92096 * 179.97438 * 23 22 2 25 25 C 1.33388 * 114.92029 * 0.02562 * 24 23 22 26 26 S 1.75886 * 109.59502 * 359.75601 * 25 24 23 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 0.97005 * 119.99795 * 359.97438 * 6 4 2 34 34 H 1.08996 * 109.46956 * 300.00500 * 7 6 4 35 35 H 1.09001 * 109.47062 * 59.99678 * 7 6 4 36 36 H 1.08996 * 109.47747 * 300.00310 * 8 7 6 37 37 H 1.08998 * 109.47315 * 60.00427 * 8 7 6 38 38 H 1.00907 * 110.99562 * 56.05256 * 9 8 7 39 39 H 1.09009 * 109.47274 * 300.00157 * 10 9 8 40 40 H 1.08996 * 109.47480 * 60.00525 * 10 9 8 41 41 H 0.97001 * 120.00247 * 0.02562 * 13 11 10 42 42 H 0.96998 * 120.00057 * 180.02562 * 17 16 14 43 43 H 1.08003 * 122.53997 * 359.95326 * 23 22 2 44 44 H 1.07998 * 122.53949 * 180.02562 * 24 23 22 45 45 H 1.08001 * 125.20631 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1946 -0.9406 -3.6508 8 6 1.6842 -0.2197 -4.9000 9 7 2.1739 -0.9120 -6.0995 10 6 1.7030 -0.2458 -7.3211 11 6 2.2237 -0.9830 -8.5279 12 8 2.9183 -1.9669 -8.3845 13 7 1.9166 -0.5496 -9.7666 14 6 2.3907 -1.2200 -10.8645 15 1 3.0099 -2.0956 -10.7368 16 6 2.0745 -0.7729 -12.1415 17 7 1.3207 0.2923 -12.2970 18 14 2.7199 -1.6866 -13.6376 19 1 1.7476 -2.7368 -14.0337 20 1 2.9022 -0.7319 -14.7602 21 1 4.0232 -2.3177 -13.3079 22 6 2.0324 -0.7104 1.2304 23 6 1.7749 -0.3463 2.4875 24 6 2.3450 -1.1534 3.4569 25 6 3.0659 -2.1726 2.9870 26 16 3.0425 -2.1503 1.2284 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.1487 0.5386 -2.5436 34 1 3.2846 -0.9411 -3.6510 35 1 1.8310 -1.9682 -3.6507 36 1 0.5942 -0.2196 -4.8996 37 1 2.0475 0.8080 -4.9004 38 1 1.9047 -1.8845 -6.0909 39 1 0.6130 -0.2460 -7.3379 40 1 2.0665 0.7816 -7.3378 41 1 1.3607 0.2371 -9.8813 42 1 1.0997 0.6042 -13.1884 43 1 1.1679 0.5133 2.7306 44 1 2.2159 -0.9717 4.5137 45 1 3.5812 -2.9027 3.5935 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132330684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:30 Heat of formation + Delta-G solvation = -41.489852 kcal Electronic energy + Delta-G solvation = -25767.178047 eV Core-core repulsion = 21911.221998 eV Total energy + Delta-G solvation = -3855.956050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 22.43 seconds Orbital eigenvalues (eV) -40.68980 -38.39651 -38.10574 -36.44474 -35.32349 -34.42506 -33.76449 -31.26506 -29.65572 -28.55154 -27.85309 -26.18522 -25.00773 -24.03676 -22.88036 -22.13025 -20.57068 -19.32681 -18.98809 -18.03303 -17.81286 -16.76103 -16.30111 -15.99537 -15.93315 -15.45537 -15.41330 -14.73523 -14.52899 -14.29767 -14.14673 -13.98566 -13.61832 -13.43140 -13.23336 -13.21374 -12.84601 -12.65512 -12.53890 -12.44271 -12.22022 -11.95388 -11.75017 -11.56286 -11.51028 -11.49348 -11.48136 -11.05344 -10.87584 -10.40843 -10.24185 -9.65847 -9.53659 -9.43172 -8.78878 -8.54384 -8.41745 -8.17526 -7.99270 -6.44407 -3.85292 0.90012 1.64855 2.11343 2.21286 2.61005 2.76555 3.16443 3.25447 3.31661 3.86793 3.99829 4.08087 4.20318 4.37753 4.52595 4.54858 4.79289 4.92051 4.95994 5.05345 5.13200 5.16113 5.22784 5.23092 5.23675 5.31618 5.37847 5.44763 5.59931 5.67335 5.68587 5.75030 5.83535 5.89732 5.95505 6.05411 6.16987 6.21393 6.35239 7.01641 7.10461 7.51440 7.53039 7.78330 8.03279 8.57980 9.15165 9.50805 10.02068 10.73230 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035331 B = 0.001571 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.312872 B =17817.209531 C =18405.829981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.009 4.009 3 C -0.136 4.136 4 C 0.520 3.480 5 O -0.517 6.517 6 N -0.718 5.718 7 C 0.118 3.882 8 C 0.049 3.951 9 N -0.665 5.665 10 C 0.053 3.947 11 C 0.439 3.561 12 O -0.582 6.582 13 N -0.563 5.563 14 C -0.300 4.300 15 H 0.104 0.896 16 C 0.023 3.977 17 N -0.902 5.902 18 Si 0.931 3.069 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.269 1.269 22 C -0.191 4.191 23 C -0.134 4.134 24 C -0.147 4.147 25 C -0.272 4.272 26 S 0.229 5.771 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.401 0.599 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.353 0.647 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.132 0.868 44 H 0.127 0.873 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.570 4.909 29.109 29.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.014 4.014 3 C -0.194 4.194 4 C 0.305 3.695 5 O -0.395 6.395 6 N -0.369 5.369 7 C -0.005 4.005 8 C -0.081 4.081 9 N -0.298 5.298 10 C -0.080 4.080 11 C 0.225 3.775 12 O -0.466 6.466 13 N -0.199 5.199 14 C -0.430 4.430 15 H 0.121 0.879 16 C -0.179 4.179 17 N -0.543 5.543 18 Si 0.758 3.242 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.310 4.310 23 C -0.165 4.165 24 C -0.177 4.177 25 C -0.408 4.408 26 S 0.495 5.505 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.236 0.764 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.172 0.828 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.150 0.850 44 H 0.145 0.855 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.386 2.991 27.950 28.211 hybrid contribution -1.961 1.221 0.285 2.327 sum -4.347 4.212 28.235 28.877 Atomic orbital electron populations 1.21897 0.90964 1.03331 1.03192 1.19205 0.97337 0.95829 0.89022 1.21896 1.02273 0.92034 1.03190 1.20472 0.79955 0.84326 0.84718 1.90461 1.38206 1.26499 1.84306 1.45800 1.53482 1.32091 1.05523 1.21354 1.00781 0.96165 0.82239 1.22075 0.97168 0.99017 0.89827 1.59931 1.63468 1.06900 0.99548 1.21670 0.97520 0.99015 0.89799 1.19768 0.86121 0.87607 0.84051 1.90537 1.41780 1.28518 1.85774 1.41852 1.46018 1.27799 1.04256 1.19720 1.29170 1.10681 0.83407 0.87866 1.25268 0.96928 0.96562 0.99142 1.69612 1.37052 1.23540 1.24099 0.85846 0.79370 0.78793 0.80224 1.20410 1.20907 1.19372 1.24158 1.07320 1.02723 0.96760 1.19850 1.03594 1.02038 0.91049 1.19963 1.01042 0.96554 1.00169 1.26679 1.06320 1.03750 1.04004 1.85615 1.46420 1.22832 0.95675 0.90773 0.91613 0.91447 0.90792 0.91543 0.91415 0.76375 0.89884 0.91081 0.94885 0.90426 0.82764 0.93705 0.89450 0.77457 0.91857 0.85042 0.85516 0.82924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 8.23 37.16 0.31 -0.45 16 2 C -0.01 -0.07 0.76 -156.81 -0.12 -0.19 16 3 C -0.14 -0.77 8.23 37.16 0.31 -0.47 16 4 C 0.52 5.23 6.47 -10.98 -0.07 5.16 16 5 O -0.52 -7.01 12.85 5.56 0.07 -6.94 16 6 N -0.72 -5.89 5.34 -60.30 -0.32 -6.22 16 7 C 0.12 1.23 5.93 -4.05 -0.02 1.21 16 8 C 0.05 0.52 5.80 -3.82 -0.02 0.50 16 9 N -0.67 -10.11 6.13 -115.06 -0.70 -10.82 16 10 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 11 C 0.44 10.19 7.82 -10.98 -0.09 10.10 16 12 O -0.58 -15.71 15.78 5.55 0.09 -15.62 16 13 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 14 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 15 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 16 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 17 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 18 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 C -0.19 -1.81 5.12 -36.01 -0.18 -1.99 16 23 C -0.13 -1.12 9.31 -41.21 -0.38 -1.51 16 24 C -0.15 -1.28 10.18 -41.21 -0.42 -1.70 16 25 C -0.27 -2.56 11.23 29.04 0.33 -2.24 16 26 S 0.23 2.54 19.58 -107.50 -2.11 0.43 16 27 H 0.07 0.33 7.94 -51.93 -0.41 -0.08 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.26 7.56 -51.93 -0.39 -0.13 16 30 H 0.07 0.33 7.94 -51.93 -0.41 -0.08 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.27 7.57 -51.93 -0.39 -0.12 16 33 H 0.40 2.14 7.31 -40.82 -0.30 1.84 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.35 5.59 8.43 -39.29 -0.33 5.26 16 39 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.13 0.82 8.01 -52.48 -0.42 0.40 16 44 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 388.69 15.07 5.86 5.86 Total: -1.00 -33.31 388.69 -8.84 -42.14 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -6.72 Total: 11.59 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -0.64 Total: 1.30 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.36 Total: -54.66 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: 0.16 Total: -22.56 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -2.11 Total: 0.43 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.31 -8.84 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132330684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.655 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 22.44 seconds