Wall clock time and date at job start Tue Mar 31 2020 22:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 O 1.21282 * 119.99865 * 240.00203 * 4 2 1 6 6 N 1.34774 * 120.00164 * 59.99708 * 4 2 1 7 7 C 1.46496 * 120.00339 * 180.02562 * 6 4 2 8 8 C 1.52992 * 109.47337 * 179.97438 * 7 6 4 9 9 N 1.46906 * 109.47164 * 179.97438 * 8 7 6 10 10 C 1.46897 * 111.00012 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47093 * 180.02562 * 10 9 8 12 12 O 1.21294 * 120.00135 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99857 * 179.97438 * 11 10 9 14 14 C 1.37096 * 119.99595 * 179.97438 * 13 11 10 15 15 H 1.08005 * 120.00404 * 0.02562 * 14 13 11 16 16 C 1.38951 * 119.99882 * 180.02562 * 14 13 11 17 17 N 1.31419 * 119.99999 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00350 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47031 * 89.99150 * 18 16 14 20 20 H 1.48494 * 109.47357 * 209.99896 * 18 16 14 21 21 H 1.48505 * 109.46632 * 329.99706 * 18 16 14 22 22 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 23 23 C 1.33388 * 125.20204 * 300.00234 * 22 2 1 24 24 C 1.38427 * 114.92096 * 179.97438 * 23 22 2 25 25 C 1.33388 * 114.92029 * 0.02562 * 24 23 22 26 26 S 1.75886 * 109.59502 * 359.75601 * 25 24 23 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 0.97005 * 119.99795 * 359.97438 * 6 4 2 34 34 H 1.08996 * 109.46956 * 300.00500 * 7 6 4 35 35 H 1.09001 * 109.47062 * 59.99678 * 7 6 4 36 36 H 1.08996 * 109.47747 * 300.00310 * 8 7 6 37 37 H 1.08998 * 109.47315 * 60.00427 * 8 7 6 38 38 H 1.00907 * 110.99562 * 56.05256 * 9 8 7 39 39 H 1.09009 * 109.47274 * 300.00157 * 10 9 8 40 40 H 1.08996 * 109.47480 * 60.00525 * 10 9 8 41 41 H 0.97001 * 120.00247 * 0.02562 * 13 11 10 42 42 H 0.96998 * 120.00057 * 180.02562 * 17 16 14 43 43 H 1.08003 * 122.53997 * 359.95326 * 23 22 2 44 44 H 1.07998 * 122.53949 * 180.02562 * 24 23 22 45 45 H 1.08001 * 125.20631 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1946 -0.9406 -3.6508 8 6 1.6842 -0.2197 -4.9000 9 7 2.1739 -0.9120 -6.0995 10 6 1.7030 -0.2458 -7.3211 11 6 2.2237 -0.9830 -8.5279 12 8 2.9183 -1.9669 -8.3845 13 7 1.9166 -0.5496 -9.7666 14 6 2.3907 -1.2200 -10.8645 15 1 3.0099 -2.0956 -10.7368 16 6 2.0745 -0.7729 -12.1415 17 7 1.3207 0.2923 -12.2970 18 14 2.7199 -1.6866 -13.6376 19 1 1.7476 -2.7368 -14.0337 20 1 2.9022 -0.7319 -14.7602 21 1 4.0232 -2.3177 -13.3079 22 6 2.0324 -0.7104 1.2304 23 6 1.7749 -0.3463 2.4875 24 6 2.3450 -1.1534 3.4569 25 6 3.0659 -2.1726 2.9870 26 16 3.0425 -2.1503 1.2284 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.1487 0.5386 -2.5436 34 1 3.2846 -0.9411 -3.6510 35 1 1.8310 -1.9682 -3.6507 36 1 0.5942 -0.2196 -4.8996 37 1 2.0475 0.8080 -4.9004 38 1 1.9047 -1.8845 -6.0909 39 1 0.6130 -0.2460 -7.3379 40 1 2.0665 0.7816 -7.3378 41 1 1.3607 0.2371 -9.8813 42 1 1.0997 0.6042 -13.1884 43 1 1.1679 0.5133 2.7306 44 1 2.2159 -0.9717 4.5137 45 1 3.5812 -2.9027 3.5935 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132330684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:22 Heat of formation + Delta-G solvation = -66.476976 kcal Electronic energy + Delta-G solvation = -25768.261570 eV Core-core repulsion = 21911.221998 eV Total energy + Delta-G solvation = -3857.039573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 30.30 seconds Orbital eigenvalues (eV) -41.42544 -40.16055 -38.82251 -37.52958 -36.06224 -35.92857 -35.15249 -33.26702 -30.70023 -29.28911 -28.26167 -27.68464 -25.91124 -25.37695 -23.73075 -22.98301 -21.31846 -21.10194 -19.92488 -19.63630 -18.67325 -17.79156 -17.42460 -17.24605 -16.80010 -16.53403 -16.33249 -16.16321 -15.89750 -15.43784 -15.29302 -14.97714 -14.67914 -14.41724 -14.33015 -13.93071 -13.81013 -13.52525 -13.36148 -13.31668 -13.24603 -12.96973 -12.94126 -12.80011 -12.57969 -12.43460 -12.40132 -12.24671 -12.12416 -12.08005 -11.58016 -11.51068 -10.43675 -10.35946 -10.23301 -10.01531 -9.46760 -9.38226 -9.22409 -8.47045 -5.95589 0.21243 0.92690 1.38006 1.39850 1.42310 1.46805 1.54691 1.95270 2.00032 2.05404 2.30424 3.00789 3.20441 3.41617 3.53547 3.68734 3.89368 4.01876 4.03655 4.12296 4.31939 4.33200 4.46214 4.50860 4.61469 4.64248 4.72144 4.72879 4.82364 4.84124 4.89486 4.93854 4.94852 5.18603 5.27693 5.29235 5.31470 5.41078 5.48791 5.72026 5.84570 6.07100 6.31785 6.41180 6.60171 7.09721 7.12759 7.56234 8.12030 8.70146 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035331 B = 0.001571 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.312872 B =17817.209531 C =18405.829981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.004 4.004 3 C -0.134 4.134 4 C 0.511 3.489 5 O -0.558 6.558 6 N -0.702 5.702 7 C 0.128 3.872 8 C 0.058 3.942 9 N -0.687 5.687 10 C 0.069 3.931 11 C 0.434 3.566 12 O -0.626 6.626 13 N -0.572 5.572 14 C -0.336 4.336 15 H 0.077 0.923 16 C -0.011 4.011 17 N -0.918 5.918 18 Si 0.992 3.008 19 H -0.271 1.271 20 H -0.270 1.270 21 H -0.275 1.275 22 C -0.193 4.193 23 C -0.131 4.131 24 C -0.148 4.148 25 C -0.277 4.277 26 S 0.150 5.850 27 H 0.092 0.908 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.419 0.581 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.345 0.655 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.398 0.602 42 H 0.278 0.722 43 H 0.162 0.838 44 H 0.150 0.850 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.441 7.362 30.075 31.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.009 4.009 3 C -0.192 4.192 4 C 0.298 3.702 5 O -0.438 6.438 6 N -0.354 5.354 7 C 0.003 3.997 8 C -0.071 4.071 9 N -0.320 5.320 10 C -0.063 4.063 11 C 0.222 3.778 12 O -0.513 6.513 13 N -0.209 5.209 14 C -0.466 4.466 15 H 0.095 0.905 16 C -0.211 4.211 17 N -0.559 5.559 18 Si 0.815 3.185 19 H -0.196 1.196 20 H -0.195 1.195 21 H -0.200 1.200 22 C -0.311 4.311 23 C -0.162 4.162 24 C -0.178 4.178 25 C -0.412 4.412 26 S 0.415 5.585 27 H 0.111 0.889 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.257 0.743 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.164 0.836 39 H 0.091 0.909 40 H 0.128 0.872 41 H 0.232 0.768 42 H 0.087 0.913 43 H 0.179 0.821 44 H 0.167 0.833 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.300 5.507 28.933 29.765 hybrid contribution -1.375 0.462 0.092 1.454 sum -5.675 5.969 29.025 30.171 Atomic orbital electron populations 1.21941 0.89020 1.02917 1.05263 1.19303 0.98630 0.96235 0.86729 1.21942 1.01214 0.90758 1.05266 1.21069 0.79369 0.83967 0.85795 1.90475 1.39955 1.28374 1.85016 1.45597 1.53199 1.32295 1.04352 1.21073 0.99334 0.95932 0.83348 1.22075 0.98582 0.99001 0.87406 1.59896 1.64658 1.06869 1.00570 1.21522 0.98852 0.98750 0.87219 1.20963 0.84610 0.87013 0.85227 1.90507 1.43516 1.30617 1.86633 1.41911 1.46469 1.28010 1.04509 1.19663 1.30589 1.11109 0.85213 0.90483 1.26005 0.96735 0.97202 1.01133 1.69662 1.37135 1.24036 1.25072 0.84947 0.78482 0.77947 0.77076 1.19618 1.19456 1.20000 1.24404 1.06869 1.01653 0.98130 1.20180 1.03175 1.02513 0.90329 1.20342 1.00087 0.95922 1.01491 1.26778 1.07146 1.04723 1.02599 1.85909 1.48807 1.25697 0.98055 0.88938 0.93264 0.89187 0.88929 0.93303 0.89177 0.74300 0.92311 0.92504 0.92311 0.88700 0.83601 0.90862 0.87229 0.76822 0.91265 0.82101 0.83258 0.81814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 8.23 71.98 0.59 -0.52 16 2 C 0.00 -0.05 0.76 -53.67 -0.04 -0.09 16 3 C -0.13 -1.15 8.23 71.98 0.59 -0.55 16 4 C 0.51 10.07 6.47 87.66 0.57 10.64 16 5 O -0.56 -15.93 12.85 -3.04 -0.04 -15.97 16 6 N -0.70 -10.45 5.34 -463.08 -2.47 -12.92 16 7 C 0.13 2.60 5.93 86.38 0.51 3.11 16 8 C 0.06 1.08 5.80 86.30 0.50 1.59 16 9 N -0.69 -20.10 6.13 -517.94 -3.17 -23.27 16 10 C 0.07 2.17 6.17 85.56 0.53 2.70 16 11 C 0.43 20.24 7.82 87.66 0.69 20.93 16 12 O -0.63 -34.74 15.78 -3.07 -0.05 -34.78 16 13 N -0.57 -28.80 5.29 -306.98 -1.62 -30.43 16 14 C -0.34 -19.02 9.68 84.04 0.81 -18.20 16 15 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 16 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 17 N -0.92 -48.76 13.05 21.66 0.28 -48.48 16 18 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 22 C -0.19 -3.48 5.12 24.59 0.13 -3.35 16 23 C -0.13 -1.92 9.31 21.22 0.20 -1.72 16 24 C -0.15 -2.35 10.18 21.22 0.22 -2.14 16 25 C -0.28 -5.24 11.23 66.72 0.75 -4.49 16 26 S 0.15 3.54 19.58 -56.49 -1.11 2.43 16 27 H 0.09 0.46 7.94 -2.39 -0.02 0.44 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.34 7.56 -2.38 -0.02 0.32 16 30 H 0.09 0.47 7.94 -2.39 -0.02 0.45 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 0.36 7.57 -2.39 -0.02 0.34 16 33 H 0.42 3.12 7.31 -92.70 -0.68 2.44 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.35 10.93 8.43 -89.69 -0.76 10.18 16 39 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.40 18.77 7.90 -92.71 -0.73 18.03 16 42 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 43 H 0.16 1.37 8.01 -2.91 -0.02 1.34 16 44 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 45 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -75.75 388.69 -0.78 -76.53 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: -1.14 Total: 34.35 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 6.51 Total: 7.79 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -6.99 Total: -115.10 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.09 Total: -50.75 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.11 Total: 2.43 kcal Total: -75.75 -0.78 -76.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132330684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.058 kcal (2) G-P(sol) polarization free energy of solvation -75.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 30.30 seconds