Wall clock time and date at job start Wed Apr 1 2020 00:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46958 * 2 1 4 4 C 1.52996 * 109.46988 * 240.00001 * 2 1 3 5 5 O 1.45201 * 109.47066 * 119.99736 * 2 1 3 6 6 C 1.34635 * 116.99851 * 59.99720 * 5 2 1 7 7 O 1.21518 * 120.00089 * 0.02562 * 6 5 2 8 8 N 1.34779 * 120.00208 * 179.97438 * 6 5 2 9 9 C 1.46494 * 120.00104 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47632 * 324.99865 * 9 8 6 11 11 C 1.50701 * 109.47208 * 85.00485 * 9 8 6 12 12 H 1.08003 * 119.99754 * 240.00169 * 11 9 8 13 13 C 1.37879 * 120.00159 * 59.99816 * 11 9 8 14 14 N 1.31511 * 119.99940 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99986 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47019 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47126 * 119.99949 * 15 13 11 18 18 H 1.48500 * 109.46887 * 239.99927 * 15 13 11 19 19 C 1.50699 * 109.47162 * 205.00120 * 9 8 6 20 20 O 1.21297 * 119.99770 * 0.02562 * 19 9 8 21 21 N 1.34775 * 120.00274 * 179.97438 * 19 9 8 22 22 C 1.40059 * 120.00095 * 185.59405 * 21 19 9 23 23 C 1.39111 * 120.49765 * 24.57754 * 22 21 19 24 24 C 1.38619 * 118.39495 * 180.22626 * 23 22 21 25 25 C 1.38166 * 119.28649 * 359.48222 * 24 23 22 26 26 N 1.31935 * 120.94156 * 0.53278 * 25 24 23 27 27 C 1.31957 * 121.75919 * 359.73841 * 26 25 24 28 28 F 1.35100 * 119.69485 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.47071 * 300.00513 * 1 2 3 30 30 H 1.08996 * 109.47060 * 59.99752 * 1 2 3 31 31 H 1.08991 * 109.47227 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46987 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47160 * 299.99765 * 3 2 1 34 34 H 1.08996 * 109.47224 * 60.00389 * 3 2 1 35 35 H 1.09001 * 109.46905 * 299.99909 * 4 2 1 36 36 H 1.08998 * 109.47526 * 59.99655 * 4 2 1 37 37 H 1.09001 * 109.47114 * 180.02562 * 4 2 1 38 38 H 0.97001 * 119.99414 * 0.02562 * 8 6 5 39 39 H 0.96999 * 120.00331 * 180.02562 * 14 13 11 40 40 H 0.97000 * 120.00182 * 5.59858 * 21 19 9 41 41 H 1.08001 * 120.80364 * 359.95722 * 23 22 21 42 42 H 1.08001 * 120.36253 * 179.72461 * 24 23 22 43 43 H 1.08002 * 119.52516 * 180.29256 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9515 -2.5096 0.5036 8 7 2.0679 -2.6656 2.4168 9 6 1.6747 -4.0670 2.5827 10 1 0.6656 -4.2095 2.1962 11 6 2.6322 -4.9506 1.8254 12 1 2.2670 -5.5907 1.0359 13 6 3.9746 -4.9417 2.1404 14 7 4.4193 -4.1619 3.1014 15 14 5.1615 -6.0364 1.2012 16 1 4.4157 -6.8110 0.1770 17 1 6.1891 -5.1959 0.5357 18 1 5.8232 -6.9730 2.1447 19 6 1.7078 -4.4282 4.0454 20 8 2.0280 -3.5966 4.8683 21 7 1.3808 -5.6749 4.4393 22 6 1.2976 -5.9790 5.8040 23 6 1.0414 -4.9785 6.7359 24 6 0.9730 -5.3274 8.0757 25 6 1.1490 -6.6485 8.4399 26 7 1.3907 -7.5758 7.5330 27 6 1.4694 -7.2866 6.2479 28 9 1.7183 -8.2693 5.3549 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 2.6276 -2.2367 3.0829 39 1 5.3637 -4.1554 3.3228 40 1 1.2030 -6.3616 3.7777 41 1 0.9036 -3.9538 6.4235 42 1 0.7802 -4.5754 8.8265 43 1 1.0917 -6.9254 9.4823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180778000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:03 Heat of formation + Delta-G solvation = -119.976053 kcal Electronic energy + Delta-G solvation = -30284.461214 eV Core-core repulsion = 25858.888571 eV Total energy + Delta-G solvation = -4425.572643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -48.70981 -40.33929 -39.87615 -38.70699 -36.54600 -34.62733 -34.06318 -33.51829 -31.97561 -31.84904 -29.84444 -27.73138 -27.14859 -27.04414 -24.36749 -23.66266 -22.96718 -21.47766 -19.88407 -19.30031 -18.24527 -17.67600 -17.40607 -16.96795 -16.45985 -15.95879 -15.81788 -15.35765 -15.15659 -15.01213 -14.94425 -14.24854 -13.98210 -13.88067 -13.85685 -13.30909 -13.17140 -12.98569 -12.90751 -12.51635 -12.38531 -12.25163 -12.15508 -11.90658 -11.55986 -11.42208 -11.22962 -11.12818 -10.89257 -10.83172 -10.62403 -10.42818 -10.10316 -9.81818 -9.76031 -9.43274 -9.27675 -9.05116 -8.66955 -7.91524 -7.80198 -6.41082 -4.57377 1.08361 1.34399 2.91738 3.12599 3.22733 3.26095 3.42864 3.54036 3.82108 3.90401 3.96481 4.17864 4.66867 4.84518 4.94372 5.05366 5.07897 5.15325 5.20863 5.26912 5.43536 5.66810 5.77397 5.77679 5.90783 5.95140 5.98461 6.06837 6.15427 6.17882 6.21285 6.29188 6.41233 6.54457 6.61363 6.72602 7.07396 7.20296 7.48392 7.52554 7.68604 7.79036 7.92777 8.47729 8.70083 8.88099 9.17759 9.48197 10.61595 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.003712 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.123220 B = 7540.359710 C = 8910.496563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.137 3.863 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.373 6.373 6 C 0.648 3.352 7 O -0.588 6.588 8 N -0.663 5.663 9 C 0.271 3.729 10 H 0.077 0.923 11 C -0.544 4.544 12 H 0.078 0.922 13 C 0.078 3.922 14 N -0.857 5.857 15 Si 0.901 3.099 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.546 3.454 20 O -0.526 6.526 21 N -0.660 5.660 22 C 0.116 3.884 23 C -0.075 4.075 24 C -0.158 4.158 25 C 0.090 3.910 26 N -0.494 5.494 27 C 0.261 3.739 28 F -0.113 7.113 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.407 0.593 39 H 0.270 0.730 40 H 0.419 0.581 41 H 0.166 0.834 42 H 0.142 0.858 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.617 3.999 2.854 8.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.239 4.239 5 O -0.288 6.288 6 C 0.400 3.600 7 O -0.480 6.480 8 N -0.321 5.321 9 C 0.167 3.833 10 H 0.095 0.905 11 C -0.583 4.583 12 H 0.096 0.904 13 C -0.131 4.131 14 N -0.491 5.491 15 Si 0.728 3.272 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.206 1.206 19 C 0.336 3.664 20 O -0.401 6.401 21 N -0.304 5.304 22 C 0.015 3.985 23 C -0.103 4.103 24 C -0.178 4.178 25 C -0.067 4.067 26 N -0.209 5.209 27 C 0.104 3.896 28 F -0.092 7.092 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.243 0.757 39 H 0.080 0.920 40 H 0.256 0.744 41 H 0.183 0.817 42 H 0.159 0.841 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.441 3.616 3.214 8.056 hybrid contribution 1.187 -0.102 -0.951 1.525 sum -5.254 3.514 2.263 6.714 Atomic orbital electron populations 1.22497 0.94654 1.05096 1.01526 1.21826 0.93895 0.91207 0.83160 1.21828 1.02107 0.93303 1.02376 1.22492 1.01435 1.03906 0.96024 1.86303 1.72151 1.25043 1.45332 1.18003 0.79374 0.79577 0.83041 1.90773 1.43223 1.70343 1.43612 1.45031 1.52717 1.11914 1.22415 1.18218 0.97911 0.79480 0.87725 0.90478 1.21271 0.91947 1.24740 1.20322 0.90436 1.25146 0.98713 0.94906 0.94319 1.69897 1.15818 1.35933 1.27428 0.86362 0.80659 0.80224 0.79956 1.19142 1.20658 1.20638 1.21560 0.72384 0.79939 0.92503 1.90494 1.45305 1.49326 1.54992 1.43441 1.68770 1.14531 1.03632 1.18655 1.00265 0.92614 0.86987 1.21867 0.95898 1.00973 0.91600 1.22080 1.01614 0.97609 0.96537 1.22291 0.98041 0.88464 0.97950 1.66899 1.14827 1.39042 1.00088 1.17846 1.03051 0.83262 0.85475 1.91601 1.91495 1.61472 1.64634 0.92650 0.91967 0.89107 0.91728 0.90819 0.91823 0.88878 0.92097 0.92485 0.75687 0.91981 0.74388 0.81719 0.84059 0.82085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 8.37 37.16 0.31 -2.34 16 2 C 0.14 2.17 1.13 -90.62 -0.10 2.07 16 3 C -0.14 -1.71 8.85 37.16 0.33 -1.38 16 4 C -0.18 -2.87 8.37 37.16 0.31 -2.56 16 5 O -0.37 -7.39 9.94 -40.31 -0.40 -7.79 16 6 C 0.65 14.34 8.01 54.06 0.43 14.77 16 7 O -0.59 -13.52 11.54 -19.29 -0.22 -13.74 16 8 N -0.66 -15.16 4.36 -61.01 -0.27 -15.43 16 9 C 0.27 6.12 2.58 -70.24 -0.18 5.94 16 10 H 0.08 1.69 7.58 -51.93 -0.39 1.29 16 11 C -0.54 -13.24 8.60 -34.44 -0.30 -13.53 16 12 H 0.08 1.89 7.81 -52.48 -0.41 1.48 16 13 C 0.08 1.94 5.23 -17.82 -0.09 1.85 16 14 N -0.86 -22.17 11.58 55.43 0.64 -21.53 16 15 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 16 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 C 0.55 11.73 5.82 -10.99 -0.06 11.66 16 20 O -0.53 -12.02 12.99 5.54 0.07 -11.95 16 21 N -0.66 -12.46 5.24 -9.70 -0.05 -12.52 16 22 C 0.12 2.07 6.46 -83.43 -0.54 1.53 16 23 C -0.08 -1.21 8.83 -39.12 -0.35 -1.55 16 24 C -0.16 -2.00 10.10 -39.47 -0.40 -2.40 16 25 C 0.09 1.16 11.17 -17.53 -0.20 0.97 16 26 N -0.49 -8.03 10.37 -13.44 -0.14 -8.17 16 27 C 0.26 4.57 8.43 -17.16 -0.14 4.43 16 28 F -0.11 -2.01 16.85 2.25 0.04 -1.97 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.57 5.88 -51.93 -0.31 1.26 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.75 5.88 -51.93 -0.31 1.45 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.41 9.67 7.58 -40.82 -0.31 9.36 16 39 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.42 7.32 8.27 -40.82 -0.34 6.98 16 41 H 0.17 2.80 5.89 -52.49 -0.31 2.49 16 42 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 366.00 15.07 5.52 5.52 Total: -1.00 -29.04 366.00 -6.12 -35.15 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -5.31 Total: 17.90 kcal Atomic # 6 Polarization: 20.41 SS G_CDS: -0.98 Total: 19.44 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.19 Total: -57.64 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.55 Total: -33.48 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.04 -6.12 -35.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180778000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.821 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds