Wall clock time and date at job start Wed Apr 1 2020 00:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46958 * 2 1 4 4 C 1.52996 * 109.46988 * 240.00001 * 2 1 3 5 5 O 1.45201 * 109.47066 * 119.99736 * 2 1 3 6 6 C 1.34635 * 116.99851 * 59.99720 * 5 2 1 7 7 O 1.21518 * 120.00089 * 0.02562 * 6 5 2 8 8 N 1.34779 * 120.00208 * 179.97438 * 6 5 2 9 9 C 1.46494 * 120.00104 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47632 * 324.99865 * 9 8 6 11 11 C 1.50701 * 109.47208 * 85.00485 * 9 8 6 12 12 H 1.08003 * 119.99754 * 240.00169 * 11 9 8 13 13 C 1.37879 * 120.00159 * 59.99816 * 11 9 8 14 14 N 1.31511 * 119.99940 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99986 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47019 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47126 * 119.99949 * 15 13 11 18 18 H 1.48500 * 109.46887 * 239.99927 * 15 13 11 19 19 C 1.50699 * 109.47162 * 205.00120 * 9 8 6 20 20 O 1.21297 * 119.99770 * 0.02562 * 19 9 8 21 21 N 1.34775 * 120.00274 * 179.97438 * 19 9 8 22 22 C 1.40059 * 120.00095 * 185.59405 * 21 19 9 23 23 C 1.39111 * 120.49765 * 24.57754 * 22 21 19 24 24 C 1.38619 * 118.39495 * 180.22626 * 23 22 21 25 25 C 1.38166 * 119.28649 * 359.48222 * 24 23 22 26 26 N 1.31935 * 120.94156 * 0.53278 * 25 24 23 27 27 C 1.31957 * 121.75919 * 359.73841 * 26 25 24 28 28 F 1.35100 * 119.69485 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.47071 * 300.00513 * 1 2 3 30 30 H 1.08996 * 109.47060 * 59.99752 * 1 2 3 31 31 H 1.08991 * 109.47227 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46987 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47160 * 299.99765 * 3 2 1 34 34 H 1.08996 * 109.47224 * 60.00389 * 3 2 1 35 35 H 1.09001 * 109.46905 * 299.99909 * 4 2 1 36 36 H 1.08998 * 109.47526 * 59.99655 * 4 2 1 37 37 H 1.09001 * 109.47114 * 180.02562 * 4 2 1 38 38 H 0.97001 * 119.99414 * 0.02562 * 8 6 5 39 39 H 0.96999 * 120.00331 * 180.02562 * 14 13 11 40 40 H 0.97000 * 120.00182 * 5.59858 * 21 19 9 41 41 H 1.08001 * 120.80364 * 359.95722 * 23 22 21 42 42 H 1.08001 * 120.36253 * 179.72461 * 24 23 22 43 43 H 1.08002 * 119.52516 * 180.29256 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9515 -2.5096 0.5036 8 7 2.0679 -2.6656 2.4168 9 6 1.6747 -4.0670 2.5827 10 1 0.6656 -4.2095 2.1962 11 6 2.6322 -4.9506 1.8254 12 1 2.2670 -5.5907 1.0359 13 6 3.9746 -4.9417 2.1404 14 7 4.4193 -4.1619 3.1014 15 14 5.1615 -6.0364 1.2012 16 1 4.4157 -6.8110 0.1770 17 1 6.1891 -5.1959 0.5357 18 1 5.8232 -6.9730 2.1447 19 6 1.7078 -4.4282 4.0454 20 8 2.0280 -3.5966 4.8683 21 7 1.3808 -5.6749 4.4393 22 6 1.2976 -5.9790 5.8040 23 6 1.0414 -4.9785 6.7359 24 6 0.9730 -5.3274 8.0757 25 6 1.1490 -6.6485 8.4399 26 7 1.3907 -7.5758 7.5330 27 6 1.4694 -7.2866 6.2479 28 9 1.7183 -8.2693 5.3549 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 2.6276 -2.2367 3.0829 39 1 5.3637 -4.1554 3.3228 40 1 1.2030 -6.3616 3.7777 41 1 0.9036 -3.9538 6.4235 42 1 0.7802 -4.5754 8.8265 43 1 1.0917 -6.9254 9.4823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180778000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:02 Heat of formation + Delta-G solvation = -139.901350 kcal Electronic energy + Delta-G solvation = -30285.325240 eV Core-core repulsion = 25858.888571 eV Total energy + Delta-G solvation = -4426.436668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.04569 -41.79422 -41.38350 -40.16018 -38.09478 -36.16542 -35.82487 -34.95314 -33.78225 -33.06779 -31.22563 -29.42240 -28.27190 -28.21384 -26.07756 -25.03129 -24.26048 -22.95507 -21.52066 -20.84794 -19.68120 -19.06592 -18.82150 -18.75434 -17.82059 -17.43807 -17.21221 -17.01882 -16.70961 -16.66646 -16.16186 -15.76670 -15.60263 -15.37301 -15.18630 -14.68717 -14.50830 -14.39547 -14.26427 -14.03669 -13.94122 -13.42419 -13.23978 -13.14198 -12.95496 -12.80206 -12.75761 -12.75335 -12.39803 -12.29503 -12.13600 -12.08950 -11.84541 -11.26672 -11.21893 -10.91461 -10.79817 -10.65015 -10.29017 -9.67972 -9.20335 -8.32326 -6.52468 -0.12779 0.12199 1.29894 1.38416 1.41112 1.47876 1.82871 2.06239 2.25307 2.32282 2.56741 2.70134 2.98947 3.49256 3.63471 3.83330 3.87803 3.90456 4.05201 4.06167 4.18057 4.41933 4.54010 4.65618 4.67375 4.68576 4.82294 4.85853 4.91234 4.95154 4.95887 5.11978 5.15208 5.29790 5.38720 5.42160 5.55396 5.61987 5.71526 5.76105 5.89955 6.35573 6.56815 6.63131 6.89518 7.21022 7.28585 7.74412 8.68478 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.003712 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.123220 B = 7540.359710 C = 8910.496563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.119 3.881 3 C -0.132 4.132 4 C -0.177 4.177 5 O -0.381 6.381 6 C 0.646 3.354 7 O -0.601 6.601 8 N -0.668 5.668 9 C 0.268 3.732 10 H 0.076 0.924 11 C -0.550 4.550 12 H 0.071 0.929 13 C 0.043 3.957 14 N -0.877 5.877 15 Si 0.951 3.049 16 H -0.263 1.263 17 H -0.284 1.284 18 H -0.281 1.281 19 C 0.549 3.451 20 O -0.545 6.545 21 N -0.657 5.657 22 C 0.089 3.911 23 C -0.086 4.086 24 C -0.139 4.139 25 C 0.104 3.896 26 N -0.511 5.511 27 C 0.243 3.757 28 F -0.123 7.123 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.401 0.599 39 H 0.267 0.733 40 H 0.421 0.579 41 H 0.153 0.847 42 H 0.185 0.815 43 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.022 4.955 3.871 9.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.082 3.918 3 C -0.189 4.189 4 C -0.235 4.235 5 O -0.297 6.297 6 C 0.399 3.601 7 O -0.494 6.494 8 N -0.325 5.325 9 C 0.163 3.837 10 H 0.094 0.906 11 C -0.588 4.588 12 H 0.089 0.911 13 C -0.163 4.163 14 N -0.512 5.512 15 Si 0.776 3.224 16 H -0.187 1.187 17 H -0.210 1.210 18 H -0.207 1.207 19 C 0.339 3.661 20 O -0.422 6.422 21 N -0.301 5.301 22 C -0.011 4.011 23 C -0.114 4.114 24 C -0.158 4.158 25 C -0.054 4.054 26 N -0.225 5.225 27 C 0.088 3.912 28 F -0.102 7.102 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.069 0.931 38 H 0.236 0.764 39 H 0.076 0.924 40 H 0.259 0.741 41 H 0.171 0.829 42 H 0.202 0.798 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.865 4.553 4.222 9.256 hybrid contribution 1.218 -0.346 -1.187 1.736 sum -5.646 4.207 3.035 7.668 Atomic orbital electron populations 1.22431 0.93703 1.03600 1.03450 1.22411 0.94955 0.92721 0.81692 1.21859 1.01990 0.90689 1.04361 1.22442 1.00954 1.02333 0.97722 1.86310 1.72255 1.23721 1.47379 1.18080 0.79129 0.80361 0.82576 1.90769 1.43722 1.70995 1.43885 1.44969 1.52862 1.12022 1.22601 1.18207 0.97416 0.79356 0.88685 0.90603 1.21394 0.92438 1.24789 1.20186 0.91067 1.25674 0.99839 0.95866 0.94955 1.69995 1.15615 1.37088 1.28487 0.85599 0.78945 0.78848 0.78962 1.18696 1.21017 1.20693 1.21205 0.72468 0.80647 0.91759 1.90471 1.46468 1.50099 1.55143 1.43219 1.68528 1.13606 1.04703 1.18836 1.02416 0.93425 0.86423 1.21965 0.96335 1.00063 0.93079 1.22534 0.98954 0.98694 0.95664 1.23176 0.94949 0.87959 0.99326 1.67013 1.15474 1.40302 0.99712 1.17937 1.04248 0.82964 0.86079 1.91563 1.91733 1.61752 1.65167 0.92087 0.88653 0.92227 0.91980 0.87410 0.91222 0.92360 0.88549 0.93145 0.76373 0.92404 0.74111 0.82946 0.79753 0.77352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.90 8.37 71.98 0.60 -4.30 16 2 C 0.12 3.64 1.13 -10.79 -0.01 3.63 16 3 C -0.13 -2.91 8.85 71.98 0.64 -2.28 16 4 C -0.18 -5.48 8.37 71.98 0.60 -4.88 16 5 O -0.38 -15.28 9.94 -55.44 -0.55 -15.83 16 6 C 0.65 29.43 8.01 129.79 1.04 30.47 16 7 O -0.60 -28.58 11.54 19.78 0.23 -28.35 16 8 N -0.67 -31.62 4.36 -577.35 -2.52 -34.14 16 9 C 0.27 12.57 2.58 43.50 0.11 12.68 16 10 H 0.08 3.49 7.58 -2.39 -0.02 3.47 16 11 C -0.55 -27.51 8.60 25.60 0.22 -27.29 16 12 H 0.07 3.58 7.81 -2.91 -0.02 3.55 16 13 C 0.04 2.17 5.23 84.66 0.44 2.62 16 14 N -0.88 -46.39 11.58 21.45 0.25 -46.14 16 15 Si 0.95 41.89 29.54 68.60 2.03 43.91 16 16 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 19 C 0.55 24.42 5.82 87.66 0.51 24.93 16 20 O -0.54 -25.63 12.99 -3.08 -0.04 -25.67 16 21 N -0.66 -25.69 5.24 -303.00 -1.59 -27.28 16 22 C 0.09 3.20 6.46 38.26 0.25 3.45 16 23 C -0.09 -2.71 8.83 22.57 0.20 -2.51 16 24 C -0.14 -3.07 10.10 22.34 0.23 -2.84 16 25 C 0.10 2.29 11.17 84.66 0.95 3.24 16 26 N -0.51 -15.70 10.37 -196.44 -2.04 -17.73 16 27 C 0.24 8.52 8.43 84.90 0.72 9.23 16 28 F -0.12 -4.47 16.85 44.97 0.76 -3.72 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 2.07 5.88 -2.39 -0.01 2.06 16 32 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 2.23 5.88 -2.39 -0.01 2.21 16 36 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.40 19.79 7.58 -92.71 -0.70 19.08 16 39 H 0.27 13.82 8.31 -92.71 -0.77 13.04 16 40 H 0.42 15.48 8.27 -92.71 -0.77 14.72 16 41 H 0.15 5.20 5.89 -2.91 -0.02 5.19 16 42 H 0.19 2.48 8.06 -2.91 -0.02 2.45 16 43 H 0.21 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -65.38 366.00 2.63 -62.75 By element: Atomic # 1 Polarization: 46.43 SS G_CDS: -0.39 Total: 46.04 kcal Atomic # 6 Polarization: 39.66 SS G_CDS: 6.49 Total: 46.15 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -5.89 Total: -125.29 kcal Atomic # 8 Polarization: -69.49 SS G_CDS: -0.36 Total: -69.85 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.76 Total: -3.72 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -65.38 2.63 -62.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180778000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.148 kcal (2) G-P(sol) polarization free energy of solvation -65.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds