Wall clock time and date at job start Wed Apr 1 2020 01:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47257 * 71.63364 * 3 2 1 5 5 C 1.34778 * 119.99797 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99972 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.99898 * 180.27352 * 5 4 3 8 8 N 1.46894 * 109.47436 * 173.45699 * 7 5 4 9 9 C 1.46847 * 111.00301 * 169.40141 * 8 7 5 10 10 C 1.53039 * 109.52415 * 185.84283 * 9 8 7 11 11 C 1.53126 * 109.27449 * 300.81595 * 10 9 8 12 12 N 1.46503 * 109.57180 * 177.59087 * 11 10 9 13 13 C 1.34773 * 119.99700 * 85.28867 * 12 11 10 14 14 O 1.21283 * 120.00222 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99848 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47104 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99775 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00149 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99458 * 179.97438 * 17 16 15 20 20 N 1.31630 * 120.00415 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99581 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47381 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47001 * 120.00262 * 21 19 17 24 24 H 1.48495 * 109.47234 * 240.00217 * 21 19 17 25 25 C 1.53124 * 109.15864 * 57.65819 * 11 10 9 26 26 C 1.46847 * 111.00173 * 293.61382 * 8 7 5 27 27 H 4.40639 * 5.51406 * 180.02562 * 4 1 2 28 28 H 1.09000 * 109.47263 * 311.62942 * 3 2 1 29 29 H 1.09005 * 109.46631 * 191.63355 * 3 2 1 30 30 H 0.97001 * 120.00008 * 359.97438 * 4 3 2 31 31 H 1.09006 * 109.47110 * 293.46059 * 7 5 4 32 32 H 1.08999 * 109.47358 * 53.45628 * 7 5 4 33 33 H 1.08996 * 109.45875 * 305.85218 * 9 8 7 34 34 H 1.08992 * 109.46460 * 65.82544 * 9 8 7 35 35 H 1.08994 * 109.50626 * 180.88030 * 10 9 8 36 36 H 1.08996 * 109.50629 * 60.75326 * 10 9 8 37 37 H 1.08995 * 109.52557 * 297.75041 * 11 10 9 38 38 H 0.97004 * 119.99988 * 265.28804 * 12 11 10 39 39 H 1.09003 * 109.47147 * 299.99952 * 15 13 12 40 40 H 1.08999 * 109.47058 * 59.99886 * 15 13 12 41 41 H 0.97000 * 119.99698 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.50017 * 182.40007 * 25 11 10 43 43 H 1.09002 * 109.50229 * 62.28469 * 25 11 10 44 44 H 1.09012 * 109.46038 * 294.17527 * 26 8 7 45 45 H 1.09002 * 109.46256 * 54.14936 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.4343 -1.3108 5 6 4.4597 -0.5108 -1.5446 6 8 5.2476 -0.2191 -0.6700 7 6 4.9623 -0.9523 -2.8950 8 7 6.4227 -0.8033 -2.9467 9 6 6.9760 -1.4521 -4.1422 10 6 8.5047 -1.4039 -4.0891 11 6 8.9623 0.0557 -4.0198 12 7 10.4223 0.1077 -3.9108 13 6 11.1830 0.0640 -5.0225 14 8 10.6589 -0.0178 -6.1131 15 6 12.6849 0.1181 -4.9104 16 16 13.4165 0.0398 -6.5641 17 6 15.1265 0.1183 -6.1461 18 1 15.4266 0.1903 -5.1112 19 6 16.0876 0.0865 -7.1470 20 7 15.7218 -0.0019 -8.4084 21 14 17.9004 0.1704 -6.7040 22 1 18.0457 0.2654 -5.2291 23 1 18.5860 -1.0536 -7.1906 24 1 18.5106 1.3655 -7.3400 25 6 8.3335 0.7218 -2.7927 26 6 6.8098 0.6118 -2.8833 27 1 -1.0499 0.0001 -0.0002 28 1 3.0097 -0.6819 0.7681 29 1 3.0088 1.0074 0.2072 30 1 2.5043 -0.6673 -2.0104 31 1 4.6977 -1.9973 -3.0573 32 1 4.5066 -0.3375 -3.6711 33 1 6.6464 -2.4905 -4.1772 34 1 6.6269 -0.9302 -5.0331 35 1 8.9149 -1.8717 -4.9841 36 1 8.8552 -1.9374 -3.2057 37 1 8.6454 0.5800 -4.9213 38 1 10.8415 0.1735 -3.0385 39 1 12.9799 1.0489 -4.4259 40 1 13.0357 -0.7270 -4.3179 41 1 16.3935 -0.0237 -9.1078 42 1 8.6214 1.7726 -2.7615 43 1 8.6813 0.2215 -1.8889 44 1 6.4614 1.1242 -3.7803 45 1 6.3597 1.0725 -2.0040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226151971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:01 Heat of formation + Delta-G solvation = -12.230072 kcal Electronic energy + Delta-G solvation = -25700.359885 eV Core-core repulsion = 21845.672634 eV Total energy + Delta-G solvation = -3854.687250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.50161 -39.55348 -38.18092 -35.95726 -34.88249 -33.16317 -32.40861 -31.97536 -31.04082 -29.40411 -28.26297 -26.19405 -25.44205 -23.49905 -22.98444 -20.97723 -20.27429 -20.00840 -19.20257 -17.80066 -17.33951 -16.88614 -16.33826 -16.27870 -16.12092 -15.33053 -15.15944 -14.93983 -14.78598 -14.71578 -14.17878 -14.03157 -13.87574 -13.75431 -13.34143 -13.30911 -13.09481 -12.56195 -12.37058 -12.18963 -11.91555 -11.61217 -11.43424 -11.35534 -11.07044 -11.05661 -10.99661 -10.89694 -10.74732 -10.62253 -10.12114 -9.77613 -9.59757 -9.32132 -9.05599 -8.80971 -8.62554 -8.20395 -6.47252 -6.19866 -3.89849 1.79306 2.14203 2.24473 2.87971 3.07691 3.14656 3.23185 3.30149 3.35394 3.60022 3.66774 3.76603 4.22606 4.29646 4.61406 4.65825 4.75069 4.85879 4.95835 4.98807 5.03413 5.06150 5.15523 5.18221 5.21420 5.25573 5.35726 5.47431 5.49757 5.65521 5.73959 5.78430 5.82397 5.90500 5.94319 6.08712 6.18597 6.25603 6.58743 6.74037 6.77074 6.89100 6.99438 7.62192 7.77883 7.79817 8.37712 8.67802 9.25813 10.87660 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.051054 B = 0.001543 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.311702 B =18142.024187 C =18420.630629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.211 4.211 3 C 0.232 3.768 4 N -0.735 5.735 5 C 0.515 3.485 6 O -0.513 6.513 7 C 0.038 3.962 8 N -0.521 5.521 9 C 0.061 3.939 10 C -0.127 4.127 11 C 0.146 3.854 12 N -0.734 5.734 13 C 0.533 3.467 14 O -0.520 6.520 15 C -0.154 4.154 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.120 4.120 26 C 0.058 3.942 27 H 0.222 0.778 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.403 0.597 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.267 0.733 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.033 0.967 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.857 -1.063 16.143 33.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.212 4.212 3 C 0.109 3.891 4 N -0.390 5.390 5 C 0.301 3.699 6 O -0.387 6.387 7 C -0.094 4.094 8 N -0.246 5.246 9 C -0.067 4.067 10 C -0.166 4.166 11 C 0.040 3.960 12 N -0.387 5.387 13 C 0.319 3.681 14 O -0.394 6.394 15 C -0.304 4.304 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.158 4.158 26 C -0.070 4.070 27 H 0.239 0.761 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.237 0.763 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.232 0.768 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.051 0.949 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -29.836 -1.218 15.179 33.497 hybrid contribution 1.017 0.417 0.944 1.449 sum -28.819 -0.801 16.123 33.032 Atomic orbital electron populations 1.25070 0.96000 1.00278 0.97386 1.22934 0.94288 1.01205 1.02747 1.18043 0.83038 1.01811 0.86170 1.46013 1.07445 1.70434 1.15069 1.20651 0.81440 0.77411 0.90401 1.90734 1.54798 1.47044 1.46126 1.21926 0.90313 1.03297 0.93840 1.61624 1.07283 1.15557 1.40182 1.22092 0.95484 0.99254 0.89877 1.21986 0.93893 0.97302 1.03387 1.20932 0.80157 0.95929 0.98942 1.46067 1.06074 1.77187 1.09367 1.20307 0.88928 0.74983 0.83875 1.90687 1.74421 1.47572 1.26720 1.23540 0.93748 1.04915 1.08245 1.85369 1.02442 1.96295 0.99362 1.22921 0.91207 1.58407 0.95732 0.90883 1.24987 0.99572 0.94562 0.94443 1.70030 1.34226 1.46909 0.99189 0.86123 0.82901 0.77892 0.78623 1.19600 1.20581 1.20583 1.21814 0.94482 1.01102 0.98422 1.22141 0.95960 0.87640 1.01275 0.76110 0.88961 0.89021 0.76271 0.87439 0.91807 0.90270 0.94286 0.90374 0.90747 0.89848 0.76796 0.89269 0.89233 0.92271 0.90812 0.90258 0.94905 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 19.25 29.55 0.57 -0.14 16 2 C -0.21 -1.14 13.46 -37.12 -0.50 -1.64 16 3 C 0.23 1.31 6.15 -6.83 -0.04 1.26 16 4 N -0.73 -3.94 5.54 -63.16 -0.35 -4.29 16 5 C 0.52 4.07 7.36 -10.99 -0.08 3.99 16 6 O -0.51 -6.08 14.71 5.55 0.08 -6.00 16 7 C 0.04 0.24 5.45 -4.98 -0.03 0.22 16 8 N -0.52 -4.79 4.35 -236.12 -1.03 -5.82 16 9 C 0.06 0.56 5.46 -3.83 -0.02 0.54 16 10 C -0.13 -1.47 5.68 -26.65 -0.15 -1.62 16 11 C 0.15 1.80 2.52 -67.80 -0.17 1.63 16 12 N -0.73 -10.14 5.08 -53.68 -0.27 -10.41 16 13 C 0.53 10.04 7.82 -10.98 -0.09 9.95 16 14 O -0.52 -11.77 15.52 5.55 0.09 -11.68 16 15 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.36 9.50 30.94 0.29 -15.07 16 18 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 21 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.12 -1.21 5.57 -26.65 -0.15 -1.36 16 26 C 0.06 0.55 5.12 -3.84 -0.02 0.53 16 27 H 0.22 0.19 7.80 -54.09 -0.42 -0.23 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.40 1.23 8.45 -40.82 -0.34 0.88 16 31 H 0.11 0.50 7.98 -51.93 -0.41 0.09 16 32 H 0.06 0.31 8.12 -51.93 -0.42 -0.11 16 33 H 0.08 0.62 8.01 -51.93 -0.42 0.21 16 34 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16 38 H 0.40 4.45 8.61 -40.82 -0.35 4.10 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.03 0.30 8.14 -51.92 -0.42 -0.12 16 45 H 0.09 0.93 6.06 -51.93 -0.31 0.61 16 LS Contribution 394.97 15.07 5.95 5.95 Total: -1.00 -37.11 394.97 -9.14 -46.25 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.85 Total: 1.54 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -0.26 Total: -2.62 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -0.92 Total: -46.11 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: 0.17 Total: -17.68 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.11 -9.14 -46.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226151971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.019 kcal (2) G-P(sol) polarization free energy of solvation -37.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds