Wall clock time and date at job start Wed Apr 1 2020 00:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47059 * 2 1 4 4 C 1.52997 * 109.47173 * 119.99614 * 2 1 3 5 5 H 1.09000 * 109.47144 * 304.88554 * 4 2 1 6 6 O 1.42903 * 109.46863 * 64.88429 * 4 2 1 7 7 C 1.50698 * 109.47597 * 184.88266 * 4 2 1 8 8 O 1.21282 * 120.00203 * 275.35433 * 7 4 2 9 9 N 1.34774 * 119.99748 * 95.34429 * 7 4 2 10 10 C 1.47184 * 120.87919 * 175.95324 * 9 7 4 11 11 C 1.53298 * 108.62583 * 115.25641 * 10 9 7 12 12 C 1.50981 * 108.95961 * 45.07321 * 11 10 9 13 13 S 1.75956 * 126.03028 * 162.48351 * 12 11 10 14 14 C 1.70902 * 90.30849 * 179.65669 * 13 12 11 15 15 C 1.50703 * 124.92798 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.46885 * 270.00646 * 15 14 13 17 17 C 1.36939 * 120.00056 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99660 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00544 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99649 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00485 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47189 * 59.99195 * 21 19 17 23 23 H 1.48493 * 109.47525 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46786 * 299.99737 * 21 19 17 25 25 N 1.28677 * 110.14560 * 0.05727 * 14 13 12 26 26 C 1.32436 * 117.82803 * 0.06075 * 25 14 13 27 27 C 1.47035 * 120.80393 * 355.93761 * 9 7 4 28 28 H 1.08999 * 109.47490 * 300.00223 * 1 2 3 29 29 H 1.08999 * 109.46731 * 60.00209 * 1 2 3 30 30 H 1.08998 * 109.47158 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47490 * 239.99777 * 2 1 3 32 32 H 1.09003 * 109.47517 * 174.77854 * 3 2 1 33 33 H 1.08998 * 109.47237 * 294.78238 * 3 2 1 34 34 H 1.09005 * 109.47428 * 54.77875 * 3 2 1 35 35 H 0.96703 * 113.99925 * 60.00203 * 6 4 2 36 36 H 1.08999 * 109.59156 * 355.52288 * 10 9 7 37 37 H 1.09003 * 109.61376 * 235.00447 * 10 9 7 38 38 H 1.09002 * 109.55583 * 285.22505 * 11 10 9 39 39 H 1.08999 * 109.64021 * 164.96757 * 11 10 9 40 40 H 1.08997 * 109.46892 * 29.99883 * 15 14 13 41 41 H 1.08999 * 109.46926 * 150.00652 * 15 14 13 42 42 H 0.97001 * 120.00230 * 359.97438 * 16 15 14 43 43 H 0.96999 * 119.99953 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.81735 * 105.61160 * 27 9 7 45 45 H 1.09003 * 109.81267 * 344.76773 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6070 -0.2603 2.1371 6 8 1.6596 -2.0975 1.1934 7 6 3.5421 -0.6173 1.3113 8 8 4.2304 -1.4117 0.7062 9 7 4.1206 0.3584 2.0391 10 6 5.5837 0.4253 2.1853 11 6 6.0845 1.7100 1.5153 12 6 5.1880 2.8556 1.9195 13 16 5.5707 4.5675 1.7822 14 6 4.0435 4.9708 2.4347 15 6 3.5469 6.3749 2.6647 16 7 3.9249 6.8121 4.0109 17 6 3.5784 8.0631 4.4470 18 1 3.0270 8.7276 3.7984 19 6 3.9369 8.4776 5.7224 20 7 4.6094 7.6680 6.5127 21 14 3.4650 10.1844 6.3170 22 1 1.9867 10.3246 6.2964 23 1 3.9611 10.3806 7.7028 24 1 4.0714 11.2047 5.4245 25 7 3.3794 3.9015 2.7018 26 6 3.9538 2.7363 2.4440 27 6 3.3053 1.3837 2.7070 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1260 1.4440 0.0935 33 1 1.7550 1.9286 -0.9330 34 1 1.6023 1.9827 0.8396 35 1 2.0103 -2.5717 0.4270 36 1 6.0391 -0.4400 1.7037 37 1 5.8454 0.4385 3.2434 38 1 6.0583 1.5907 0.4321 39 1 7.1060 1.9157 1.8351 40 1 3.9921 7.0430 1.9275 41 1 2.4616 6.3971 2.5668 42 1 4.4198 6.2152 4.5937 43 1 4.8596 7.9575 7.4040 44 1 3.2748 1.1908 3.7793 45 1 2.2938 1.3737 2.3009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264747253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:22 Heat of formation + Delta-G solvation = -26.118444 kcal Electronic energy + Delta-G solvation = -27696.297628 eV Core-core repulsion = 23841.008133 eV Total energy + Delta-G solvation = -3855.289495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.16080 -39.61558 -37.57410 -36.57332 -34.80383 -34.57815 -32.68960 -31.63784 -29.89742 -28.01795 -27.31127 -26.82217 -25.70444 -23.75769 -23.18273 -21.92748 -21.20014 -19.98419 -18.63792 -18.26336 -17.46321 -17.28119 -17.08917 -16.33753 -15.67303 -15.15799 -15.03811 -14.87666 -14.70559 -14.29131 -13.97417 -13.70463 -13.58993 -13.53356 -13.25139 -12.97493 -12.91380 -12.76033 -12.64526 -12.35151 -12.23490 -12.04511 -11.84409 -11.56347 -11.47276 -11.27038 -11.13076 -10.99687 -10.85110 -10.69142 -10.21734 -9.86654 -9.80293 -9.38405 -9.16030 -8.97991 -8.97137 -8.49228 -7.06988 -5.84305 -3.16074 0.82840 1.47746 1.93802 2.15790 2.49619 2.85027 3.40470 3.44817 3.45957 3.86164 3.97060 4.12023 4.30278 4.42684 4.53421 4.57212 4.69666 4.84544 4.91572 4.96058 4.97427 5.14192 5.18709 5.20395 5.28873 5.34560 5.45562 5.48313 5.55940 5.57826 5.62153 5.73087 5.73367 5.94112 5.94732 5.98573 6.01045 6.12235 6.36307 6.41889 6.93279 7.15088 7.60550 7.70039 7.94340 8.31302 9.43713 9.94308 10.30594 11.37869 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.002733 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.066705 B =10243.491572 C =10895.468430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.161 4.161 4 C 0.093 3.907 5 H 0.122 0.878 6 O -0.538 6.538 7 C 0.501 3.499 8 O -0.538 6.538 9 N -0.606 5.606 10 C 0.114 3.886 11 C -0.052 4.052 12 C -0.238 4.238 13 S 0.138 5.862 14 C 0.077 3.923 15 C 0.224 3.776 16 N -0.723 5.723 17 C -0.246 4.246 18 H 0.074 0.926 19 C -0.008 4.008 20 N -0.930 5.930 21 Si 0.912 3.088 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 N -0.462 5.462 26 C 0.050 3.950 27 C 0.181 3.819 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.384 0.616 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.054 0.946 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.093 0.907 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 -17.261 -14.021 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.218 4.218 4 C 0.031 3.969 5 H 0.139 0.861 6 O -0.343 6.343 7 C 0.289 3.711 8 O -0.415 6.415 9 N -0.340 5.340 10 C -0.010 4.010 11 C -0.093 4.093 12 C -0.360 4.360 13 S 0.397 5.603 14 C -0.202 4.202 15 C 0.094 3.906 16 N -0.369 5.369 17 C -0.377 4.377 18 H 0.092 0.908 19 C -0.205 4.205 20 N -0.577 5.577 21 Si 0.742 3.258 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 N -0.176 5.176 26 C -0.084 4.084 27 C 0.056 3.944 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.233 0.767 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.111 0.889 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.439 -16.678 -13.923 21.773 hybrid contribution -0.061 0.104 0.404 0.422 sum -1.500 -16.574 -13.518 21.441 Atomic orbital electron populations 1.21780 0.93243 1.02585 1.02396 1.21734 0.97719 0.97122 0.97148 1.22128 1.01624 0.94877 1.03194 1.22119 0.89580 0.84388 1.00851 0.86089 1.86606 1.75392 1.20580 1.51754 1.21531 0.91795 0.80077 0.77659 1.90686 1.65048 1.41871 1.43931 1.48161 1.07516 1.27573 1.50796 1.21713 0.79529 0.98150 1.01613 1.20449 0.97576 0.90123 1.01133 1.25826 1.00191 0.98305 1.11652 1.83990 1.20065 0.97716 1.58579 1.27307 0.93615 0.99590 0.99734 1.19338 0.98273 0.82662 0.90348 1.42254 1.67849 1.16232 1.10548 1.19149 1.30279 0.90598 0.97697 0.90798 1.24774 1.00612 0.98490 0.96620 1.69666 1.43290 1.35866 1.08903 0.86205 0.78119 0.83704 0.77746 1.21078 1.21618 1.21102 1.65765 1.36139 0.96759 1.18979 1.20697 0.91833 0.93781 1.02064 1.20513 0.94326 0.81118 0.98460 0.92121 0.92139 0.91768 0.90141 0.92114 0.91722 0.91264 0.76686 0.87941 0.90139 0.89974 0.89121 0.94000 0.92857 0.77939 0.93274 0.88876 0.87267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.09 37.16 0.34 -0.69 16 2 C -0.12 -0.96 2.71 -90.62 -0.25 -1.21 16 3 C -0.16 -1.48 7.63 37.16 0.28 -1.20 16 4 C 0.09 0.85 2.51 -27.89 -0.07 0.78 16 5 H 0.12 1.02 6.28 -51.93 -0.33 0.69 16 6 O -0.54 -5.13 12.78 -52.08 -0.67 -5.80 16 7 C 0.50 5.57 5.70 -10.99 -0.06 5.51 16 8 O -0.54 -7.34 15.96 -11.29 -0.18 -7.52 16 9 N -0.61 -6.39 2.43 -172.95 -0.42 -6.81 16 10 C 0.11 1.11 6.41 -3.51 -0.02 1.09 16 11 C -0.05 -0.53 6.44 -27.59 -0.18 -0.70 16 12 C -0.24 -3.12 6.43 -35.45 -0.23 -3.34 16 13 S 0.14 2.01 23.17 -107.50 -2.49 -0.48 16 14 C 0.08 1.35 6.75 -13.60 -0.09 1.26 16 15 C 0.22 4.46 6.84 -5.19 -0.04 4.43 16 16 N -0.72 -18.08 5.59 -61.09 -0.34 -18.42 16 17 C -0.25 -6.72 9.99 -15.06 -0.15 -6.87 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.93 -27.76 13.06 55.49 0.72 -27.03 16 21 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 N -0.46 -7.85 10.51 -7.28 -0.08 -7.93 16 26 C 0.05 0.70 6.50 -82.82 -0.54 0.16 16 27 C 0.18 1.98 5.26 -4.11 -0.02 1.96 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.45 7.82 -51.93 -0.41 0.05 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.65 5.80 -51.93 -0.30 0.35 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.67 6.44 -51.93 -0.33 0.33 16 35 H 0.38 2.85 8.65 45.56 0.39 3.24 16 36 H 0.10 1.00 7.04 -51.93 -0.37 0.63 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.39 10.41 7.66 -40.82 -0.31 10.10 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.11 1.06 3.43 -51.93 -0.18 0.88 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -32.45 372.79 -9.58 -42.03 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.60 Total: 8.61 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.12 Total: 0.85 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.11 Total: -60.20 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.85 Total: -13.32 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.49 Total: -0.48 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.45 -9.58 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264747253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.910 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds