Wall clock time and date at job start Wed Apr 1 2020 00:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47059 * 2 1 4 4 C 1.52997 * 109.47173 * 119.99614 * 2 1 3 5 5 H 1.09000 * 109.47144 * 304.88554 * 4 2 1 6 6 O 1.42903 * 109.46863 * 64.88429 * 4 2 1 7 7 C 1.50698 * 109.47597 * 184.88266 * 4 2 1 8 8 O 1.21282 * 120.00203 * 275.35433 * 7 4 2 9 9 N 1.34774 * 119.99748 * 95.34429 * 7 4 2 10 10 C 1.47184 * 120.87919 * 175.95324 * 9 7 4 11 11 C 1.53298 * 108.62583 * 115.25641 * 10 9 7 12 12 C 1.50981 * 108.95961 * 45.07321 * 11 10 9 13 13 S 1.75956 * 126.03028 * 162.48351 * 12 11 10 14 14 C 1.70902 * 90.30849 * 179.65669 * 13 12 11 15 15 C 1.50703 * 124.92798 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.46885 * 270.00646 * 15 14 13 17 17 C 1.36939 * 120.00056 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99660 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00544 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99649 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00485 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47189 * 59.99195 * 21 19 17 23 23 H 1.48493 * 109.47525 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46786 * 299.99737 * 21 19 17 25 25 N 1.28677 * 110.14560 * 0.05727 * 14 13 12 26 26 C 1.32436 * 117.82803 * 0.06075 * 25 14 13 27 27 C 1.47035 * 120.80393 * 355.93761 * 9 7 4 28 28 H 1.08999 * 109.47490 * 300.00223 * 1 2 3 29 29 H 1.08999 * 109.46731 * 60.00209 * 1 2 3 30 30 H 1.08998 * 109.47158 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47490 * 239.99777 * 2 1 3 32 32 H 1.09003 * 109.47517 * 174.77854 * 3 2 1 33 33 H 1.08998 * 109.47237 * 294.78238 * 3 2 1 34 34 H 1.09005 * 109.47428 * 54.77875 * 3 2 1 35 35 H 0.96703 * 113.99925 * 60.00203 * 6 4 2 36 36 H 1.08999 * 109.59156 * 355.52288 * 10 9 7 37 37 H 1.09003 * 109.61376 * 235.00447 * 10 9 7 38 38 H 1.09002 * 109.55583 * 285.22505 * 11 10 9 39 39 H 1.08999 * 109.64021 * 164.96757 * 11 10 9 40 40 H 1.08997 * 109.46892 * 29.99883 * 15 14 13 41 41 H 1.08999 * 109.46926 * 150.00652 * 15 14 13 42 42 H 0.97001 * 120.00230 * 359.97438 * 16 15 14 43 43 H 0.96999 * 119.99953 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.81735 * 105.61160 * 27 9 7 45 45 H 1.09003 * 109.81267 * 344.76773 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6070 -0.2603 2.1371 6 8 1.6596 -2.0975 1.1934 7 6 3.5421 -0.6173 1.3113 8 8 4.2304 -1.4117 0.7062 9 7 4.1206 0.3584 2.0391 10 6 5.5837 0.4253 2.1853 11 6 6.0845 1.7100 1.5153 12 6 5.1880 2.8556 1.9195 13 16 5.5707 4.5675 1.7822 14 6 4.0435 4.9708 2.4347 15 6 3.5469 6.3749 2.6647 16 7 3.9249 6.8121 4.0109 17 6 3.5784 8.0631 4.4470 18 1 3.0270 8.7276 3.7984 19 6 3.9369 8.4776 5.7224 20 7 4.6094 7.6680 6.5127 21 14 3.4650 10.1844 6.3170 22 1 1.9867 10.3246 6.2964 23 1 3.9611 10.3806 7.7028 24 1 4.0714 11.2047 5.4245 25 7 3.3794 3.9015 2.7018 26 6 3.9538 2.7363 2.4440 27 6 3.3053 1.3837 2.7070 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1260 1.4440 0.0935 33 1 1.7550 1.9286 -0.9330 34 1 1.6023 1.9827 0.8396 35 1 2.0103 -2.5717 0.4270 36 1 6.0391 -0.4400 1.7037 37 1 5.8454 0.4385 3.2434 38 1 6.0583 1.5907 0.4321 39 1 7.1060 1.9157 1.8351 40 1 3.9921 7.0430 1.9275 41 1 2.4616 6.3971 2.5668 42 1 4.4198 6.2152 4.5937 43 1 4.8596 7.9575 7.4040 44 1 3.2748 1.1908 3.7793 45 1 2.2938 1.3737 2.3009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264747253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:58 Heat of formation + Delta-G solvation = -48.585893 kcal Electronic energy + Delta-G solvation = -27697.271890 eV Core-core repulsion = 23841.008133 eV Total energy + Delta-G solvation = -3856.263757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 42.96 seconds Orbital eigenvalues (eV) -42.06127 -40.69657 -38.39048 -37.59191 -36.48737 -35.36829 -33.78084 -33.26024 -31.21310 -28.77731 -28.49119 -27.93340 -26.61527 -25.39568 -24.26617 -23.31440 -21.96818 -20.90981 -19.61682 -19.59586 -18.98605 -18.26833 -18.08685 -17.21536 -16.81020 -16.58226 -16.01761 -15.93999 -15.72780 -15.51336 -15.23869 -14.95879 -14.91679 -14.48595 -14.18896 -14.03670 -13.93249 -13.78280 -13.74427 -13.45696 -13.08124 -12.97635 -12.94718 -12.80816 -12.72797 -12.44900 -12.23537 -12.18009 -12.12197 -11.91062 -11.87978 -11.42714 -11.01647 -10.65310 -10.58267 -10.22440 -9.95341 -9.63221 -9.09281 -7.96627 -5.28654 -0.36250 0.31897 0.74980 1.29424 1.49419 1.52920 1.58466 1.63054 1.69281 2.56370 2.89102 3.17519 3.30590 3.38193 3.59553 3.64551 3.71487 3.81339 3.87597 4.07798 4.14406 4.15836 4.22666 4.25301 4.28160 4.46277 4.51205 4.54196 4.66670 4.70117 4.77260 4.82058 4.84348 4.86183 4.98080 5.09166 5.13176 5.18841 5.26656 5.36769 5.47878 6.07714 6.21607 6.51588 6.73000 6.85725 7.29582 7.95802 8.22642 9.26455 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.002733 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.066705 B =10243.491572 C =10895.468430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C -0.156 4.156 4 C 0.096 3.904 5 H 0.129 0.871 6 O -0.546 6.546 7 C 0.501 3.499 8 O -0.565 6.565 9 N -0.603 5.603 10 C 0.112 3.888 11 C -0.050 4.050 12 C -0.224 4.224 13 S 0.163 5.837 14 C 0.039 3.961 15 C 0.227 3.773 16 N -0.736 5.736 17 C -0.249 4.249 18 H 0.084 0.916 19 C -0.071 4.071 20 N -0.969 5.969 21 Si 0.979 3.021 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.274 1.274 25 N -0.476 5.476 26 C 0.035 3.965 27 C 0.185 3.815 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.392 0.608 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.101 0.899 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 -17.813 -15.018 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 C -0.213 4.213 4 C 0.034 3.966 5 H 0.147 0.853 6 O -0.353 6.353 7 C 0.291 3.709 8 O -0.444 6.444 9 N -0.337 5.337 10 C -0.012 4.012 11 C -0.090 4.090 12 C -0.346 4.346 13 S 0.421 5.579 14 C -0.239 4.239 15 C 0.098 3.902 16 N -0.380 5.380 17 C -0.381 4.381 18 H 0.102 0.898 19 C -0.263 4.263 20 N -0.619 5.619 21 Si 0.807 3.193 22 H -0.203 1.203 23 H -0.223 1.223 24 H -0.200 1.200 25 N -0.191 5.191 26 C -0.098 4.098 27 C 0.060 3.940 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.243 0.757 36 H 0.124 0.876 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.205 0.795 43 H 0.061 0.939 44 H 0.119 0.881 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.651 -17.219 -14.967 22.874 hybrid contribution 0.034 0.164 0.602 0.625 sum -1.618 -17.055 -14.365 22.357 Atomic orbital electron populations 1.21762 0.92332 1.02880 1.02752 1.21668 0.98319 0.96214 0.96703 1.22067 1.00554 0.95544 1.03164 1.22166 0.88272 0.84536 1.01659 0.85334 1.86587 1.75444 1.20773 1.52456 1.21867 0.92490 0.79589 0.76987 1.90673 1.65806 1.42880 1.45043 1.48186 1.07873 1.27227 1.50417 1.21812 0.79134 0.97985 1.02266 1.20592 0.97918 0.88864 1.01632 1.26281 1.00155 0.98360 1.09817 1.83801 1.17893 0.98746 1.57497 1.26822 0.95639 0.98765 1.02698 1.19291 0.98121 0.84717 0.88071 1.42415 1.67758 1.15518 1.12276 1.19608 1.29048 0.91581 0.97833 0.89767 1.25619 1.01353 1.02310 0.97057 1.69831 1.45249 1.37785 1.09021 0.85147 0.77990 0.79451 0.76747 1.20280 1.22307 1.19982 1.65713 1.37137 0.97535 1.18713 1.21047 0.92353 0.93914 1.02472 1.20567 0.94694 0.79703 0.99025 0.92115 0.91469 0.91489 0.89991 0.93547 0.91333 0.91809 0.75713 0.87590 0.89183 0.89182 0.87119 0.92671 0.93251 0.79505 0.93896 0.88119 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.09 71.98 0.65 -1.12 16 2 C -0.11 -1.61 2.71 -10.79 -0.03 -1.64 16 3 C -0.16 -2.67 7.63 71.98 0.55 -2.12 16 4 C 0.10 1.61 2.51 29.85 0.07 1.69 16 5 H 0.13 1.94 6.28 -2.39 -0.01 1.93 16 6 O -0.55 -9.58 12.78 -132.87 -1.70 -11.28 16 7 C 0.50 10.40 5.70 87.66 0.50 10.90 16 8 O -0.56 -14.67 15.96 13.07 0.21 -14.46 16 9 N -0.60 -11.72 2.43 -819.48 -1.99 -13.71 16 10 C 0.11 1.96 6.41 86.35 0.55 2.51 16 11 C -0.05 -0.88 6.44 30.04 0.19 -0.69 16 12 C -0.22 -5.52 6.43 24.95 0.16 -5.36 16 13 S 0.16 4.58 23.17 -56.49 -1.31 3.28 16 14 C 0.04 1.36 6.75 88.57 0.60 1.96 16 15 C 0.23 9.09 6.84 85.63 0.59 9.67 16 16 N -0.74 -37.25 5.59 -347.18 -1.94 -39.19 16 17 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 18 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 19 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 20 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16 21 Si 0.98 45.18 29.55 68.60 2.03 47.21 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 N -0.48 -16.01 10.51 -176.96 -1.86 -17.87 16 26 C 0.04 0.95 6.50 42.15 0.27 1.22 16 27 C 0.19 3.80 5.26 86.04 0.45 4.25 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.82 7.82 -2.39 -0.02 0.81 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 0.93 5.80 -2.39 -0.01 0.91 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.16 6.44 -2.38 -0.02 1.14 16 35 H 0.39 5.30 8.65 -74.05 -0.64 4.66 16 36 H 0.11 1.85 7.04 -2.39 -0.02 1.84 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.37 20.57 7.66 -92.71 -0.71 19.86 16 43 H 0.25 14.88 8.31 -92.71 -0.77 14.10 16 44 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.12 2.18 3.43 -2.39 -0.01 2.17 16 Total: -1.00 -69.18 372.79 -0.71 -69.89 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: -0.31 Total: 29.78 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 5.87 Total: 4.95 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -5.51 Total: -129.37 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -1.49 Total: -25.74 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -1.31 Total: 3.28 kcal Total: -69.18 -0.71 -69.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264747253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.305 kcal (2) G-P(sol) polarization free energy of solvation -69.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 42.96 seconds