Wall clock time and date at job start Wed Apr 1 2020 01:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47278 * 2 1 4 4 N 1.46498 * 109.47456 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99761 * 264.11886 * 4 3 2 6 6 H 1.08003 * 119.99928 * 188.01183 * 5 4 3 7 7 C 1.38808 * 120.00362 * 8.00848 * 5 4 3 8 8 N 1.31626 * 119.99971 * 25.64890 * 7 5 4 9 9 Si 1.86802 * 120.00261 * 205.65047 * 7 5 4 10 10 H 1.48508 * 109.46884 * 84.98997 * 9 7 5 11 11 H 1.48499 * 109.47101 * 204.98484 * 9 7 5 12 12 H 1.48491 * 109.47238 * 324.99022 * 9 7 5 13 13 C 1.46496 * 120.00179 * 84.11064 * 4 3 2 14 14 C 1.52997 * 109.47246 * 270.00383 * 13 4 3 15 15 N 1.46505 * 109.47069 * 179.97438 * 14 13 4 16 16 C 1.34774 * 119.99788 * 179.97438 * 15 14 13 17 17 O 1.21276 * 120.00372 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99665 * 180.02562 * 16 15 14 19 19 N 1.46500 * 109.47048 * 180.02562 * 18 16 15 20 20 C 1.34775 * 120.00262 * 179.97438 * 19 18 16 21 21 O 1.21642 * 119.99748 * 0.02562 * 20 19 18 22 22 C 1.47184 * 120.00361 * 180.02562 * 20 19 18 23 23 C 1.44428 * 123.46154 * 180.02562 * 22 20 19 24 24 C 1.32768 * 113.08244 * 180.02562 * 23 22 20 25 25 S 1.75507 * 110.57745 * 359.76094 * 24 23 22 26 26 C 1.36006 * 123.46176 * 0.02726 * 22 20 19 27 27 H 1.08995 * 109.46856 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46957 * 299.99766 * 1 2 3 29 29 H 1.09003 * 109.47163 * 59.99792 * 1 2 3 30 30 H 1.08999 * 109.46957 * 240.00234 * 2 1 3 31 31 H 1.09000 * 109.47176 * 119.99673 * 2 1 3 32 32 H 1.08997 * 109.46844 * 59.99676 * 3 2 1 33 33 H 1.09003 * 109.47193 * 300.00190 * 3 2 1 34 34 H 0.97003 * 119.99786 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47132 * 150.00025 * 13 4 3 36 36 H 1.09001 * 109.47141 * 30.00291 * 13 4 3 37 37 H 1.09004 * 109.47152 * 60.00092 * 14 13 4 38 38 H 1.08997 * 109.47055 * 299.99504 * 14 13 4 39 39 H 0.97002 * 120.00011 * 0.02562 * 15 14 13 40 40 H 1.08997 * 109.47169 * 60.00139 * 18 16 15 41 41 H 1.09001 * 109.47403 * 300.00221 * 18 16 15 42 42 H 0.97001 * 119.99977 * 0.02562 * 19 18 16 43 43 H 1.07994 * 123.46152 * 0.02562 * 23 22 20 44 44 H 1.08002 * 124.71165 * 180.02562 * 24 23 22 45 45 H 1.08004 * 124.59185 * 359.96186 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.5639 1.1788 6 1 5.2623 1.6941 1.1696 7 6 3.5068 1.5197 2.3862 8 7 2.3566 0.8851 2.4686 9 14 4.2195 2.3608 3.8942 10 1 3.8326 3.7946 3.8905 11 1 3.6924 1.7090 5.1200 12 1 5.6999 2.2476 3.8709 13 6 4.2370 1.3126 -1.2629 14 6 4.4919 -0.1675 -1.5546 15 7 5.2234 -0.2975 -2.8173 16 6 5.5605 -1.5183 -3.2782 17 8 5.2579 -2.5093 -2.6480 18 6 6.3135 -1.6519 -4.5768 19 7 6.5574 -3.0692 -4.8562 20 6 7.2190 -3.4318 -5.9730 21 8 7.6140 -2.5821 -6.7488 22 6 7.4636 -4.8557 -6.2541 23 6 8.1638 -5.3272 -7.4260 24 6 8.2676 -6.6500 -7.4731 25 16 7.5107 -7.3787 -6.0673 26 6 7.0535 -5.8625 -5.4369 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9564 -0.8900 34 1 1.8789 0.8545 3.3123 35 1 5.1894 1.8371 -1.1863 36 1 3.6477 1.7459 -2.0710 37 1 3.5394 -0.6920 -1.6313 38 1 5.0813 -0.6008 -0.7467 39 1 5.4658 0.4951 -3.3212 40 1 7.2657 -1.1272 -4.5003 41 1 5.7239 -1.2189 -5.3849 42 1 6.2421 -3.7467 -4.2378 43 1 8.5620 -4.6713 -8.1859 44 1 8.7543 -7.2009 -8.2644 45 1 6.5148 -5.7205 -4.5116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266579345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:02 Heat of formation + Delta-G solvation = -16.067539 kcal Electronic energy + Delta-G solvation = -26146.631619 eV Core-core repulsion = 22291.777964 eV Total energy + Delta-G solvation = -3854.853655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.37468 -39.30654 -37.10853 -36.65022 -34.82530 -34.39639 -31.98673 -31.52706 -30.58955 -28.80728 -27.04646 -25.54690 -25.05878 -23.37029 -21.67585 -20.88402 -20.66357 -19.96399 -19.56148 -18.58273 -17.53846 -16.91444 -16.38860 -16.27233 -16.04291 -15.27414 -14.96993 -14.89418 -14.55621 -14.09274 -13.74358 -13.57312 -13.40237 -13.32198 -13.14303 -12.96343 -12.87934 -12.76868 -12.49540 -12.31623 -11.63872 -11.49615 -11.37159 -11.09902 -10.89779 -10.65847 -10.43650 -10.23569 -10.02441 -10.01411 -9.93768 -9.71705 -9.50023 -9.38019 -9.27604 -8.81405 -8.75017 -8.38569 -6.98487 -5.82548 -3.14283 0.39964 1.15955 1.53939 1.66657 2.60947 2.69987 3.09846 3.36729 3.41619 3.45277 3.47621 4.38236 4.45874 4.60941 4.75457 4.87589 5.00817 5.14235 5.19134 5.26932 5.43222 5.48092 5.70174 5.75608 5.82331 5.88228 6.04471 6.14369 6.18877 6.24673 6.48572 6.55679 6.60830 6.64860 6.78874 6.95293 7.15136 7.23532 7.23926 7.57724 7.62979 7.75099 7.94025 8.06506 8.22866 8.30303 9.17458 9.79086 10.23087 11.20746 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.001861 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.377072 B =15042.457801 C =15174.067184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.171 3.829 4 N -0.590 5.590 5 C -0.257 4.257 6 H 0.075 0.925 7 C 0.001 3.999 8 N -0.890 5.890 9 Si 0.898 3.102 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.089 3.911 15 N -0.717 5.717 16 C 0.502 3.498 17 O -0.543 6.543 18 C 0.100 3.900 19 N -0.712 5.712 20 C 0.580 3.420 21 O -0.539 6.539 22 C -0.156 4.156 23 C -0.084 4.084 24 C -0.239 4.239 25 S 0.190 5.810 26 C -0.208 4.208 27 H 0.033 0.967 28 H 0.051 0.949 29 H 0.030 0.970 30 H 0.020 0.980 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.003 0.997 34 H 0.253 0.747 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.399 0.601 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.411 0.589 43 H 0.155 0.845 44 H 0.170 0.830 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.854 -11.987 -18.335 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.046 3.954 4 N -0.311 5.311 5 C -0.386 4.386 6 H 0.092 0.908 7 C -0.197 4.197 8 N -0.535 5.535 9 Si 0.728 3.272 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.014 3.986 14 C -0.037 4.037 15 N -0.368 5.368 16 C 0.286 3.714 17 O -0.420 6.420 18 C -0.028 4.028 19 N -0.367 5.367 20 C 0.366 3.634 21 O -0.418 6.418 22 C -0.174 4.174 23 C -0.113 4.113 24 C -0.374 4.374 25 S 0.455 5.545 26 C -0.346 4.346 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.039 0.961 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.022 0.978 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.233 0.767 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.249 0.751 43 H 0.172 0.828 44 H 0.188 0.812 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.602 -13.548 -17.729 23.572 hybrid contribution 0.389 1.810 0.521 1.923 sum 7.990 -11.738 -17.208 22.310 Atomic orbital electron populations 1.21628 0.98540 0.99333 1.00040 1.22226 0.92949 1.00486 1.01322 1.20935 0.81500 0.94516 0.98459 1.44244 1.01924 1.83527 1.01379 1.19259 0.92246 1.43611 0.83463 0.90754 1.24735 0.97581 1.00040 0.97335 1.70164 1.17191 1.41095 1.25030 0.86369 0.78414 0.79902 0.82548 1.21562 1.21959 1.20767 1.20963 0.96502 0.91575 0.89578 1.22828 0.95914 1.01959 0.82953 1.46128 1.57696 1.07344 1.25600 1.20436 0.80009 0.84271 0.86657 1.90699 1.55124 1.37141 1.59080 1.21123 1.01698 0.83776 0.96174 1.45550 1.58272 1.08253 1.24584 1.17546 0.77575 0.87567 0.80701 1.90797 1.51458 1.52029 1.47474 1.20246 1.06309 0.93235 0.97605 1.21130 0.98454 0.94553 0.97154 1.25544 1.09673 0.98124 1.04041 1.83143 1.50668 1.06125 1.14546 1.25813 1.05642 0.98234 1.04936 0.94811 0.92965 0.95060 0.96107 0.88349 0.89183 0.97834 0.93679 0.93093 0.93792 0.91413 0.91331 0.76738 0.88202 0.88237 0.75052 0.82762 0.81224 0.80926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.91 37.16 0.37 -2.24 16 2 C -0.13 -2.87 5.61 -26.73 -0.15 -3.02 16 3 C 0.17 3.90 4.92 -4.04 -0.02 3.88 16 4 N -0.59 -13.67 2.54 -173.25 -0.44 -14.11 16 5 C -0.26 -6.61 9.70 -15.06 -0.15 -6.76 16 6 H 0.07 1.89 7.94 -52.48 -0.42 1.48 16 7 C 0.00 0.03 4.89 -17.43 -0.09 -0.06 16 8 N -0.89 -23.87 8.62 55.49 0.48 -23.39 16 9 Si 0.90 21.00 29.62 -169.99 -5.04 15.96 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 13 C 0.14 2.62 5.82 -4.05 -0.02 2.59 16 14 C 0.09 1.58 5.88 -4.04 -0.02 1.56 16 15 N -0.72 -9.63 5.56 -60.29 -0.33 -9.96 16 16 C 0.50 6.98 7.90 -10.98 -0.09 6.90 16 17 O -0.54 -9.59 15.67 5.56 0.09 -9.51 16 18 C 0.10 1.09 6.15 -5.19 -0.03 1.06 16 19 N -0.71 -8.17 5.50 -62.64 -0.34 -8.51 16 20 C 0.58 7.14 7.79 -12.63 -0.10 7.04 16 21 O -0.54 -8.06 16.80 5.24 0.09 -7.97 16 22 C -0.16 -1.60 5.98 -104.63 -0.63 -2.22 16 23 C -0.08 -0.75 10.10 -39.02 -0.39 -1.14 16 24 C -0.24 -1.62 11.12 28.86 0.32 -1.30 16 25 S 0.19 1.23 23.02 -107.50 -2.48 -1.24 16 26 C -0.21 -1.73 10.38 29.93 0.31 -1.42 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.44 5.97 -51.93 -0.31 0.13 16 31 H 0.10 2.53 6.33 -51.93 -0.33 2.20 16 32 H 0.09 2.31 5.85 -51.93 -0.30 2.00 16 33 H 0.00 0.07 7.98 -51.93 -0.41 -0.34 16 34 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 36 H 0.04 0.73 7.95 -51.93 -0.41 0.31 16 37 H 0.07 1.35 5.92 -51.93 -0.31 1.04 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.40 3.99 8.47 -40.82 -0.35 3.65 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.41 4.57 5.93 -40.82 -0.24 4.33 16 43 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 44 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.17 1.23 7.01 -52.48 -0.37 0.86 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -31.31 385.45 -9.24 -40.55 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -6.38 Total: 7.50 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -0.69 Total: 4.87 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.64 Total: -55.97 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.18 Total: -17.48 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.04 Total: 15.96 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.48 Total: -1.24 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.31 -9.24 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266579345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.480 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds