Wall clock time and date at job start Wed Apr 1 2020 01:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47278 * 2 1 4 4 N 1.46498 * 109.47456 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99761 * 264.11886 * 4 3 2 6 6 H 1.08003 * 119.99928 * 188.01183 * 5 4 3 7 7 C 1.38808 * 120.00362 * 8.00848 * 5 4 3 8 8 N 1.31626 * 119.99971 * 25.64890 * 7 5 4 9 9 Si 1.86802 * 120.00261 * 205.65047 * 7 5 4 10 10 H 1.48508 * 109.46884 * 84.98997 * 9 7 5 11 11 H 1.48499 * 109.47101 * 204.98484 * 9 7 5 12 12 H 1.48491 * 109.47238 * 324.99022 * 9 7 5 13 13 C 1.46496 * 120.00179 * 84.11064 * 4 3 2 14 14 C 1.52997 * 109.47246 * 270.00383 * 13 4 3 15 15 N 1.46505 * 109.47069 * 179.97438 * 14 13 4 16 16 C 1.34774 * 119.99788 * 179.97438 * 15 14 13 17 17 O 1.21276 * 120.00372 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99665 * 180.02562 * 16 15 14 19 19 N 1.46500 * 109.47048 * 180.02562 * 18 16 15 20 20 C 1.34775 * 120.00262 * 179.97438 * 19 18 16 21 21 O 1.21642 * 119.99748 * 0.02562 * 20 19 18 22 22 C 1.47184 * 120.00361 * 180.02562 * 20 19 18 23 23 C 1.44428 * 123.46154 * 180.02562 * 22 20 19 24 24 C 1.32768 * 113.08244 * 180.02562 * 23 22 20 25 25 S 1.75507 * 110.57745 * 359.76094 * 24 23 22 26 26 C 1.36006 * 123.46176 * 0.02726 * 22 20 19 27 27 H 1.08995 * 109.46856 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46957 * 299.99766 * 1 2 3 29 29 H 1.09003 * 109.47163 * 59.99792 * 1 2 3 30 30 H 1.08999 * 109.46957 * 240.00234 * 2 1 3 31 31 H 1.09000 * 109.47176 * 119.99673 * 2 1 3 32 32 H 1.08997 * 109.46844 * 59.99676 * 3 2 1 33 33 H 1.09003 * 109.47193 * 300.00190 * 3 2 1 34 34 H 0.97003 * 119.99786 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47132 * 150.00025 * 13 4 3 36 36 H 1.09001 * 109.47141 * 30.00291 * 13 4 3 37 37 H 1.09004 * 109.47152 * 60.00092 * 14 13 4 38 38 H 1.08997 * 109.47055 * 299.99504 * 14 13 4 39 39 H 0.97002 * 120.00011 * 0.02562 * 15 14 13 40 40 H 1.08997 * 109.47169 * 60.00139 * 18 16 15 41 41 H 1.09001 * 109.47403 * 300.00221 * 18 16 15 42 42 H 0.97001 * 119.99977 * 0.02562 * 19 18 16 43 43 H 1.07994 * 123.46152 * 0.02562 * 23 22 20 44 44 H 1.08002 * 124.71165 * 180.02562 * 24 23 22 45 45 H 1.08004 * 124.59185 * 359.96186 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.5639 1.1788 6 1 5.2623 1.6941 1.1696 7 6 3.5068 1.5197 2.3862 8 7 2.3566 0.8851 2.4686 9 14 4.2195 2.3608 3.8942 10 1 3.8326 3.7946 3.8905 11 1 3.6924 1.7090 5.1200 12 1 5.6999 2.2476 3.8709 13 6 4.2370 1.3126 -1.2629 14 6 4.4919 -0.1675 -1.5546 15 7 5.2234 -0.2975 -2.8173 16 6 5.5605 -1.5183 -3.2782 17 8 5.2579 -2.5093 -2.6480 18 6 6.3135 -1.6519 -4.5768 19 7 6.5574 -3.0692 -4.8562 20 6 7.2190 -3.4318 -5.9730 21 8 7.6140 -2.5821 -6.7488 22 6 7.4636 -4.8557 -6.2541 23 6 8.1638 -5.3272 -7.4260 24 6 8.2676 -6.6500 -7.4731 25 16 7.5107 -7.3787 -6.0673 26 6 7.0535 -5.8625 -5.4369 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9564 -0.8900 34 1 1.8789 0.8545 3.3123 35 1 5.1894 1.8371 -1.1863 36 1 3.6477 1.7459 -2.0710 37 1 3.5394 -0.6920 -1.6313 38 1 5.0813 -0.6008 -0.7467 39 1 5.4658 0.4951 -3.3212 40 1 7.2657 -1.1272 -4.5003 41 1 5.7239 -1.2189 -5.3849 42 1 6.2421 -3.7467 -4.2378 43 1 8.5620 -4.6713 -8.1859 44 1 8.7543 -7.2009 -8.2644 45 1 6.5148 -5.7205 -4.5116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266579345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:00 Heat of formation + Delta-G solvation = -37.045707 kcal Electronic energy + Delta-G solvation = -26147.541301 eV Core-core repulsion = 22291.777964 eV Total energy + Delta-G solvation = -3855.763337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.37696 -40.40207 -38.36874 -37.78810 -36.06814 -35.55457 -33.74111 -33.23671 -31.38665 -30.06416 -28.22919 -27.36090 -25.86947 -24.91798 -22.61186 -22.36602 -21.95723 -21.52176 -20.46005 -19.28547 -18.76944 -18.31243 -17.42870 -17.40314 -17.10654 -16.81212 -16.21771 -16.15332 -15.66590 -15.54038 -15.33449 -14.74454 -14.58448 -14.46057 -14.21609 -14.08864 -13.92381 -13.90629 -13.43822 -13.41780 -13.37893 -13.02761 -12.80537 -12.64513 -12.39607 -12.18247 -12.11125 -11.81352 -11.69593 -11.55635 -11.19807 -11.13693 -11.05753 -10.40456 -10.32103 -10.08430 -10.01022 -9.38922 -8.85397 -7.79514 -5.11542 -0.25536 0.60034 0.95471 0.97266 1.46482 1.49251 1.52653 1.58216 1.72114 2.26124 2.36867 2.57976 3.28872 3.52606 3.79828 3.84524 3.92697 4.21347 4.29662 4.29854 4.31468 4.33783 4.44991 4.53219 4.65349 4.70603 4.82615 4.85731 4.97036 5.07329 5.08996 5.12676 5.15892 5.26967 5.27082 5.42877 5.46035 5.53246 5.66030 5.88416 6.20288 6.33550 6.37041 6.46811 7.02727 7.13360 7.22857 7.93076 8.31885 9.21291 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.001861 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.377072 B =15042.457801 C =15174.067184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.120 4.120 3 C 0.174 3.826 4 N -0.607 5.607 5 C -0.262 4.262 6 H 0.073 0.927 7 C -0.047 4.047 8 N -0.908 5.908 9 Si 0.953 3.047 10 H -0.289 1.289 11 H -0.302 1.302 12 H -0.277 1.277 13 C 0.143 3.857 14 C 0.111 3.889 15 N -0.703 5.703 16 C 0.505 3.495 17 O -0.582 6.582 18 C 0.108 3.892 19 N -0.712 5.712 20 C 0.580 3.420 21 O -0.573 6.573 22 C -0.183 4.183 23 C -0.107 4.107 24 C -0.231 4.231 25 S 0.239 5.761 26 C -0.215 4.215 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.024 0.976 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.026 0.974 34 H 0.245 0.755 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.032 0.968 39 H 0.420 0.580 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.413 0.587 43 H 0.151 0.849 44 H 0.198 0.802 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.440 -12.518 -20.136 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C 0.049 3.951 4 N -0.328 5.328 5 C -0.392 4.392 6 H 0.091 0.909 7 C -0.243 4.243 8 N -0.554 5.554 9 Si 0.783 3.217 10 H -0.216 1.216 11 H -0.229 1.229 12 H -0.203 1.203 13 C 0.016 3.984 14 C -0.016 4.016 15 N -0.356 5.356 16 C 0.291 3.709 17 O -0.462 6.462 18 C -0.019 4.019 19 N -0.366 5.366 20 C 0.367 3.633 21 O -0.454 6.454 22 C -0.202 4.202 23 C -0.136 4.136 24 C -0.366 4.366 25 S 0.505 5.495 26 C -0.353 4.353 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.257 0.743 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.251 0.749 43 H 0.169 0.831 44 H 0.215 0.785 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.212 -14.060 -19.568 25.456 hybrid contribution 0.242 1.873 1.024 2.149 sum 8.454 -12.186 -18.544 23.746 Atomic orbital electron populations 1.21533 0.96219 1.00352 1.00612 1.22016 0.94989 0.99580 0.99397 1.20814 0.81635 0.94713 0.97909 1.44408 1.02310 1.83871 1.02192 1.19475 0.92358 1.42706 0.84627 0.90900 1.25344 0.98402 1.01034 0.99540 1.70330 1.18140 1.42056 1.24877 0.85501 0.77867 0.78666 0.79700 1.21587 1.22881 1.20284 1.21098 0.97104 0.91769 0.88419 1.22200 0.94643 1.00962 0.83745 1.45818 1.57064 1.08408 1.24292 1.20896 0.79294 0.83511 0.87163 1.90689 1.56628 1.38487 1.60428 1.21139 1.02194 0.84006 0.94567 1.45590 1.58042 1.08498 1.24477 1.17861 0.76878 0.88324 0.80207 1.90766 1.53018 1.53080 1.48502 1.20239 1.08413 0.92442 0.99078 1.21177 0.99661 0.95524 0.97197 1.25905 1.08471 0.97575 1.04608 1.83016 1.48990 1.04102 1.13379 1.26029 1.05139 0.99176 1.05001 0.93602 0.94068 0.92711 0.95777 0.92388 0.92217 0.95608 0.94490 0.91870 0.91019 0.93517 0.94926 0.74309 0.86582 0.86391 0.74890 0.83133 0.78515 0.80268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 9.91 71.98 0.71 -4.07 16 2 C -0.12 -5.31 5.61 30.60 0.17 -5.13 16 3 C 0.17 7.91 4.92 86.38 0.42 8.34 16 4 N -0.61 -27.93 2.54 -702.03 -1.78 -29.71 16 5 C -0.26 -13.56 9.70 84.03 0.81 -12.74 16 6 H 0.07 3.71 7.94 -2.91 -0.02 3.69 16 7 C -0.05 -2.53 4.89 84.86 0.41 -2.11 16 8 N -0.91 -50.01 8.62 21.65 0.19 -49.82 16 9 Si 0.95 43.84 29.62 68.60 2.03 45.87 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 C 0.14 5.05 5.82 86.38 0.50 5.55 16 14 C 0.11 3.92 5.88 86.38 0.51 4.43 16 15 N -0.70 -17.83 5.56 -463.06 -2.57 -20.40 16 16 C 0.51 13.55 7.90 87.66 0.69 14.25 16 17 O -0.58 -20.59 15.67 -3.02 -0.05 -20.64 16 18 C 0.11 2.20 6.15 85.63 0.53 2.72 16 19 N -0.71 -15.88 5.50 -470.33 -2.59 -18.46 16 20 C 0.58 14.11 7.79 86.59 0.67 14.79 16 21 O -0.57 -17.04 16.80 -4.16 -0.07 -17.11 16 22 C -0.18 -3.66 5.98 -19.87 -0.12 -3.78 16 23 C -0.11 -1.83 10.10 22.67 0.23 -1.60 16 24 C -0.23 -2.63 11.12 66.64 0.74 -1.89 16 25 S 0.24 2.56 23.02 -56.49 -1.30 1.26 16 26 C -0.21 -3.35 10.38 67.30 0.70 -2.65 16 27 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.02 1.02 5.97 -2.39 -0.01 1.01 16 31 H 0.06 3.06 6.33 -2.39 -0.02 3.04 16 32 H 0.06 3.09 5.85 -2.39 -0.01 3.08 16 33 H 0.03 1.04 7.98 -2.39 -0.02 1.02 16 34 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 35 H 0.06 2.08 8.03 -2.39 -0.02 2.06 16 36 H 0.07 2.15 7.95 -2.39 -0.02 2.13 16 37 H 0.05 1.86 5.92 -2.38 -0.01 1.85 16 38 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.42 7.28 8.47 -92.71 -0.79 6.50 16 40 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.41 9.05 5.93 -92.71 -0.55 8.50 16 43 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 44 H 0.20 1.04 8.06 -2.91 -0.02 1.02 16 45 H 0.18 2.41 7.01 -2.91 -0.02 2.39 16 Total: -1.00 -69.43 385.45 0.55 -68.88 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -0.31 Total: 24.02 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 6.99 Total: 16.11 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -6.75 Total: -118.40 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.12 Total: -37.75 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.30 Total: 1.26 kcal Total: -69.43 0.55 -68.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266579345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.836 kcal (2) G-P(sol) polarization free energy of solvation -69.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds