Wall clock time and date at job start Wed Apr 1 2020 01:39:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31000 * 1
3 3 C 1.50705 * 119.99730 * 2 1
4 4 N 1.46494 * 109.47025 * 125.00244 * 3 2 1
5 5 C 1.34780 * 119.99713 * 179.97438 * 4 3 2
6 6 O 1.21273 * 120.00013 * 0.02562 * 5 4 3
7 7 C 1.50704 * 119.99882 * 180.02562 * 5 4 3
8 8 N 1.46898 * 109.46915 * 180.02562 * 7 5 4
9 9 C 1.48292 * 110.99912 * 183.83134 * 8 7 5
10 10 C 1.56004 * 105.06957 * 122.54218 * 9 8 7
11 11 H 1.09000 * 116.86095 * 159.27182 * 10 9 8
12 12 C 1.57077 * 99.67975 * 32.87647 * 10 9 8
13 13 C 1.49705 * 111.00091 * 301.42741 * 8 7 5
14 14 H 1.09001 * 116.79855 * 75.75384 * 13 8 7
15 15 C 1.56023 * 104.08633 * 306.12677 * 13 8 7
16 16 N 1.47863 * 105.11261 * 288.80160 * 15 13 8
17 17 C 1.34769 * 126.92606 * 181.93336 * 16 15 13
18 18 O 1.21283 * 120.00262 * 180.02562 * 17 16 15
19 19 C 1.50703 * 120.00299 * 0.02685 * 17 16 15
20 20 S 1.80994 * 109.47496 * 179.97438 * 19 17 16
21 21 C 1.76195 * 100.00331 * 179.97438 * 20 19 17
22 22 H 1.08004 * 120.00038 * 0.02562 * 21 20 19
23 23 C 1.38798 * 120.00434 * 179.97438 * 21 20 19
24 24 N 1.31628 * 119.99975 * 0.02562 * 23 21 20
25 25 Si 1.86804 * 120.00173 * 180.02562 * 23 21 20
26 26 H 1.48498 * 109.47121 * 90.00463 * 25 23 21
27 27 H 1.48498 * 109.46898 * 210.00337 * 25 23 21
28 28 H 1.48498 * 109.46968 * 330.00197 * 25 23 21
29 29 H 1.08004 * 119.99456 * 180.02562 * 1 2 3
30 30 H 1.08000 * 120.00577 * 359.97438 * 1 2 3
31 31 H 1.08000 * 120.00163 * 180.02562 * 2 1 3
32 32 H 1.08998 * 109.47149 * 5.00215 * 3 2 1
33 33 H 1.09003 * 109.46575 * 245.00391 * 3 2 1
34 34 H 0.97001 * 120.00687 * 0.02562 * 4 3 2
35 35 H 1.08998 * 109.47142 * 60.00098 * 7 5 4
36 36 H 1.08999 * 109.46984 * 299.99952 * 7 5 4
37 37 H 1.09000 * 110.31735 * 3.64641 * 9 8 7
38 38 H 1.08994 * 110.32056 * 241.44240 * 9 8 7
39 39 H 1.08999 * 112.35722 * 191.55275 * 12 10 9
40 40 H 1.08999 * 112.35175 * 64.13857 * 12 10 9
41 41 H 1.08999 * 110.30848 * 47.70859 * 15 13 8
42 42 H 1.08994 * 110.31249 * 169.88585 * 15 13 8
43 43 H 1.09000 * 109.46644 * 299.99948 * 19 17 16
44 44 H 1.08991 * 109.47075 * 59.99453 * 19 17 16
45 45 H 0.97001 * 120.00693 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3052 0.0000
4 7 2.9937 1.3320 1.1313
5 6 3.7789 2.4087 1.3327
6 8 3.7150 3.3556 0.5777
7 6 4.7363 2.4361 2.4963
8 7 5.4706 3.7084 2.4963
9 6 6.4886 3.7344 3.5743
10 6 7.8438 3.9935 2.8464
11 1 8.6595 4.3905 3.4507
12 6 7.3407 4.9005 1.6666
13 6 6.2224 3.8940 1.2150
14 1 5.6384 4.1763 0.3391
15 6 7.0778 2.5957 1.0852
16 7 8.1209 2.7155 2.1263
17 6 9.1203 1.8463 2.3751
18 8 9.9112 2.0705 3.2667
19 6 9.2551 0.5955 1.5453
20 16 10.6825 -0.3582 2.1188
21 6 10.6042 -1.7240 1.0085
22 1 9.8240 -1.7699 0.2630
23 6 11.5456 -2.7405 1.0911
24 7 12.4968 -2.6845 1.9992
25 14 11.4629 -4.1882 -0.0866
26 1 12.2621 -3.8848 -1.3009
27 1 12.0111 -5.3982 0.5772
28 1 10.0498 -4.4325 -0.4722
29 1 -0.5399 -0.9354 0.0004
30 1 -0.5401 0.9352 0.0004
31 1 1.8500 -0.9353 -0.0004
32 1 1.3585 2.1317 0.0896
33 1 2.6212 1.4026 -0.9315
34 1 3.0452 0.5745 1.7351
35 1 5.4410 1.6094 2.4064
36 1 4.1789 2.3388 3.4278
37 1 6.5148 2.7763 4.0933
38 1 6.2758 4.5405 4.2764
39 1 8.1026 5.0447 0.9006
40 1 6.9296 5.8469 2.0176
41 1 6.4605 1.7161 1.2675
42 1 7.5341 2.5404 0.0969
43 1 8.3517 -0.0061 1.6456
44 1 9.3965 0.8669 0.4992
45 1 13.1546 -3.3950 2.0573
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001267702019.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 01:39:48
Heat of formation + Delta-G solvation = -21.524286 kcal
Electronic energy + Delta-G solvation = -27218.228790 eV
Core-core repulsion = 23363.138512 eV
Total energy + Delta-G solvation = -3855.090278 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 1.71 seconds
Orbital eigenvalues (eV)
-42.47751 -40.56739 -39.51039 -36.77452 -35.11805 -34.61955 -33.80416 -32.71287
-30.86844 -30.36450 -28.35446 -27.69698 -26.28730 -25.65496 -22.63363 -21.97710
-21.58951 -20.76671 -20.17469 -19.47735 -18.41146 -18.04571 -17.79865 -17.34262
-16.91657 -16.73840 -16.54656 -16.14783 -16.10272 -15.82148 -15.20840 -14.91632
-14.62053 -14.43605 -14.18590 -14.06727 -13.97849 -13.65430 -13.43797 -13.22227
-13.18477 -13.02774 -12.92084 -12.73309 -12.67290 -12.49834 -12.32095 -12.11069
-12.03500 -11.75903 -11.17514 -11.06508 -10.93514 -10.48436 -10.33867 -10.03122
-9.87506 -9.33365 -8.72208 -8.37857 -6.17089 1.16440 1.17733 1.40274
1.41025 1.48206 1.52970 1.60430 1.94051 2.21747 2.23813 2.84383
2.96306 3.14472 3.31620 3.40504 3.65439 3.71885 3.77155 3.88729
3.92268 4.06352 4.13510 4.16970 4.24316 4.31070 4.38639 4.44429
4.56020 4.58391 4.69495 4.75751 4.80968 4.86364 4.95238 4.99752
5.03398 5.18447 5.37870 5.38534 5.60178 5.65333 5.76809 5.77775
6.16186 6.31170 6.53564 7.02445 7.03243 7.23351 8.71449
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.009049 B = 0.003169 C = 0.002450
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3093.533296 B = 8833.382390 C =11424.500816
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.185 4.185
3 C 0.149 3.851
4 N -0.720 5.720
5 C 0.516 3.484
6 O -0.558 6.558
7 C 0.017 3.983
8 N -0.499 5.499
9 C 0.035 3.965
10 C 0.100 3.900
11 H 0.122 0.878
12 C -0.124 4.124
13 C 0.069 3.931
14 H 0.148 0.852
15 C 0.057 3.943
16 N -0.618 5.618
17 C 0.551 3.449
18 O -0.561 6.561
19 C -0.120 4.120
20 S -0.144 6.144
21 C -0.547 4.547
22 H 0.081 0.919
23 C 0.015 3.985
24 N -0.910 5.910
25 Si 0.999 3.001
26 H -0.268 1.268
27 H -0.276 1.276
28 H -0.257 1.257
29 H 0.116 0.884
30 H 0.103 0.897
31 H 0.124 0.876
32 H 0.065 0.935
33 H 0.065 0.935
34 H 0.414 0.586
35 H 0.075 0.925
36 H 0.127 0.873
37 H 0.057 0.943
38 H 0.114 0.886
39 H 0.085 0.915
40 H 0.114 0.886
41 H 0.079 0.921
42 H 0.077 0.923
43 H 0.102 0.898
44 H 0.100 0.900
45 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.311 10.274 -2.817 27.462
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.203 4.203
3 C 0.026 3.974
4 N -0.374 5.374
5 C 0.303 3.697
6 O -0.436 6.436
7 C -0.114 4.114
8 N -0.223 5.223
9 C -0.093 4.093
10 C -0.002 4.002
11 H 0.140 0.860
12 C -0.162 4.162
13 C -0.039 4.039
14 H 0.165 0.835
15 C -0.067 4.067
16 N -0.354 5.354
17 C 0.340 3.660
18 O -0.440 6.440
19 C -0.272 4.272
20 S 0.083 5.917
21 C -0.695 4.695
22 H 0.099 0.901
23 C -0.190 4.190
24 N -0.547 5.547
25 Si 0.820 3.180
26 H -0.194 1.194
27 H -0.201 1.201
28 H -0.181 1.181
29 H 0.134 0.866
30 H 0.121 0.879
31 H 0.141 0.859
32 H 0.084 0.916
33 H 0.084 0.916
34 H 0.250 0.750
35 H 0.093 0.907
36 H 0.145 0.855
37 H 0.076 0.924
38 H 0.132 0.868
39 H 0.104 0.896
40 H 0.132 0.868
41 H 0.097 0.903
42 H 0.096 0.904
43 H 0.120 0.880
44 H 0.118 0.882
45 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -24.392 11.540 -1.868 27.049
hybrid contribution 0.145 -2.373 -1.352 2.735
sum -24.247 9.167 -3.219 26.121
Atomic orbital electron populations
1.24163 0.95619 1.03232 0.96699 1.22973 0.96479 0.97584 1.03311
1.20376 0.91508 0.96334 0.89185 1.45945 1.40474 1.19850 1.31086
1.20630 0.81030 0.82075 0.85973 1.90648 1.68670 1.36167 1.48077
1.22426 0.96756 0.93315 0.98888 1.64904 1.23580 1.30681 1.03166
1.23708 0.88626 1.02883 0.94082 1.24259 0.97289 0.83261 0.95420
0.85982 1.23970 0.97047 0.98307 0.96870 1.24821 0.92080 0.92362
0.94666 0.83475 1.23468 0.89928 1.01220 0.92038 1.49268 1.28063
1.22259 1.35816 1.19698 0.79412 0.83624 0.83290 1.90690 1.43048
1.76455 1.33760 1.23294 1.03988 0.97093 1.02779 1.85553 1.34657
1.23188 1.48281 1.23164 1.17833 1.07910 1.20605 0.90135 1.26129
0.93771 1.01301 0.97800 1.70174 1.15363 1.34600 1.34526 0.84953
0.79232 0.76268 0.77533 1.19350 1.20093 1.18135 0.86561 0.87916
0.85860 0.91641 0.91642 0.74971 0.90717 0.85534 0.92412 0.86801
0.89624 0.86759 0.90346 0.90436 0.88018 0.88222 0.91882
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.27 14.32 67.78 0.97 -0.30 16
2 C -0.19 -1.77 9.63 25.65 0.25 -1.52 16
3 C 0.15 1.97 6.11 85.64 0.52 2.49 16
4 N -0.72 -9.45 5.55 -466.79 -2.59 -12.04 16
5 C 0.52 9.26 7.49 87.66 0.66 9.91 16
6 O -0.56 -13.66 14.02 -3.01 -0.04 -13.70 16
7 C 0.02 0.27 4.65 85.56 0.40 0.67 16
8 N -0.50 -9.20 5.16 -844.18 -4.36 -13.55 16
9 C 0.04 0.66 6.28 87.08 0.55 1.20 16
10 C 0.10 2.27 5.23 46.92 0.25 2.51 16
11 H 0.12 2.95 8.06 -2.39 -0.02 2.93 16
12 C -0.12 -2.21 6.80 33.46 0.23 -1.99 16
13 C 0.07 1.32 4.15 46.85 0.19 1.52 16
14 H 0.15 3.07 6.42 -2.39 -0.02 3.05 16
15 C 0.06 1.27 5.62 87.17 0.49 1.76 16
16 N -0.62 -17.42 2.95 -768.40 -2.26 -19.68 16
17 C 0.55 21.40 7.91 87.66 0.69 22.09 16
18 O -0.56 -26.61 16.21 -3.04 -0.05 -26.66 16
19 C -0.12 -4.98 5.44 71.24 0.39 -4.59 16
20 S -0.14 -8.07 20.57 -56.49 -1.16 -9.23 16
21 C -0.55 -31.31 9.50 67.95 0.65 -30.67 16
22 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16
23 C 0.01 0.85 5.49 84.86 0.47 1.31 16
24 N -0.91 -55.76 13.22 21.65 0.29 -55.47 16
25 Si 1.00 43.27 29.55 68.60 2.03 45.30 16
26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16
27 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16
28 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16
29 H 0.12 0.64 8.06 -2.91 -0.02 0.62 16
30 H 0.10 0.76 7.84 -2.91 -0.02 0.73 16
31 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16
32 H 0.07 0.95 7.79 -2.39 -0.02 0.93 16
33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
34 H 0.41 3.50 8.46 -92.71 -0.78 2.71 16
35 H 0.08 1.23 5.65 -2.39 -0.01 1.22 16
36 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16
37 H 0.06 1.19 7.62 -2.39 -0.02 1.17 16
38 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16
39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16
40 H 0.11 1.67 8.14 -2.39 -0.02 1.66 16
41 H 0.08 1.67 5.21 -2.39 -0.01 1.66 16
42 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16
43 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16
44 H 0.10 3.86 8.14 -2.40 -0.02 3.84 16
45 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16
Total: -1.00 -78.87 381.62 -1.24 -80.10
By element:
Atomic # 1 Polarization: 20.32 SS G_CDS: 0.22 Total: 20.54 kcal
Atomic # 6 Polarization: -2.29 SS G_CDS: 6.69 Total: 4.40 kcal
Atomic # 7 Polarization: -91.83 SS G_CDS: -8.92 Total: -100.75 kcal
Atomic # 8 Polarization: -40.27 SS G_CDS: -0.09 Total: -40.36 kcal
Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal
Atomic # 16 Polarization: -8.07 SS G_CDS: -1.16 Total: -9.23 kcal
Total: -78.87 -1.24 -80.10 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267702019.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.578 kcal
(2) G-P(sol) polarization free energy of solvation -78.866 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.288 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.237 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.102 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.524 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.71 seconds