Wall clock time and date at job start Wed Apr 1 2020 01:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 119.99730 * 2 1 4 4 N 1.46494 * 109.47025 * 125.00244 * 3 2 1 5 5 C 1.34780 * 119.99713 * 179.97438 * 4 3 2 6 6 O 1.21273 * 120.00013 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.99882 * 180.02562 * 5 4 3 8 8 N 1.46898 * 109.46915 * 180.02562 * 7 5 4 9 9 C 1.48292 * 110.99912 * 183.83134 * 8 7 5 10 10 C 1.56004 * 105.06957 * 122.54218 * 9 8 7 11 11 H 1.09000 * 116.86095 * 159.27182 * 10 9 8 12 12 C 1.57077 * 99.67975 * 32.87647 * 10 9 8 13 13 C 1.49705 * 111.00091 * 301.42741 * 8 7 5 14 14 H 1.09001 * 116.79855 * 75.75384 * 13 8 7 15 15 C 1.56023 * 104.08633 * 306.12677 * 13 8 7 16 16 N 1.47863 * 105.11261 * 288.80160 * 15 13 8 17 17 C 1.34769 * 126.92606 * 181.93336 * 16 15 13 18 18 O 1.21283 * 120.00262 * 180.02562 * 17 16 15 19 19 C 1.50703 * 120.00299 * 0.02685 * 17 16 15 20 20 S 1.80994 * 109.47496 * 179.97438 * 19 17 16 21 21 C 1.76195 * 100.00331 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00038 * 0.02562 * 21 20 19 23 23 C 1.38798 * 120.00434 * 179.97438 * 21 20 19 24 24 N 1.31628 * 119.99975 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00173 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47121 * 90.00463 * 25 23 21 27 27 H 1.48498 * 109.46898 * 210.00337 * 25 23 21 28 28 H 1.48498 * 109.46968 * 330.00197 * 25 23 21 29 29 H 1.08004 * 119.99456 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00577 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.00163 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47149 * 5.00215 * 3 2 1 33 33 H 1.09003 * 109.46575 * 245.00391 * 3 2 1 34 34 H 0.97001 * 120.00687 * 0.02562 * 4 3 2 35 35 H 1.08998 * 109.47142 * 60.00098 * 7 5 4 36 36 H 1.08999 * 109.46984 * 299.99952 * 7 5 4 37 37 H 1.09000 * 110.31735 * 3.64641 * 9 8 7 38 38 H 1.08994 * 110.32056 * 241.44240 * 9 8 7 39 39 H 1.08999 * 112.35722 * 191.55275 * 12 10 9 40 40 H 1.08999 * 112.35175 * 64.13857 * 12 10 9 41 41 H 1.08999 * 110.30848 * 47.70859 * 15 13 8 42 42 H 1.08994 * 110.31249 * 169.88585 * 15 13 8 43 43 H 1.09000 * 109.46644 * 299.99948 * 19 17 16 44 44 H 1.08991 * 109.47075 * 59.99453 * 19 17 16 45 45 H 0.97001 * 120.00693 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1313 5 6 3.7789 2.4087 1.3327 6 8 3.7150 3.3556 0.5777 7 6 4.7363 2.4361 2.4963 8 7 5.4706 3.7084 2.4963 9 6 6.4886 3.7344 3.5743 10 6 7.8438 3.9935 2.8464 11 1 8.6595 4.3905 3.4507 12 6 7.3407 4.9005 1.6666 13 6 6.2224 3.8940 1.2150 14 1 5.6384 4.1763 0.3391 15 6 7.0778 2.5957 1.0852 16 7 8.1209 2.7155 2.1263 17 6 9.1203 1.8463 2.3751 18 8 9.9112 2.0705 3.2667 19 6 9.2551 0.5955 1.5453 20 16 10.6825 -0.3582 2.1188 21 6 10.6042 -1.7240 1.0085 22 1 9.8240 -1.7699 0.2630 23 6 11.5456 -2.7405 1.0911 24 7 12.4968 -2.6845 1.9992 25 14 11.4629 -4.1882 -0.0866 26 1 12.2621 -3.8848 -1.3009 27 1 12.0111 -5.3982 0.5772 28 1 10.0498 -4.4325 -0.4722 29 1 -0.5399 -0.9354 0.0004 30 1 -0.5401 0.9352 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4026 -0.9315 34 1 3.0452 0.5745 1.7351 35 1 5.4410 1.6094 2.4064 36 1 4.1789 2.3388 3.4278 37 1 6.5148 2.7763 4.0933 38 1 6.2758 4.5405 4.2764 39 1 8.1026 5.0447 0.9006 40 1 6.9296 5.8469 2.0176 41 1 6.4605 1.7161 1.2675 42 1 7.5341 2.5404 0.0969 43 1 8.3517 -0.0061 1.6456 44 1 9.3965 0.8669 0.4992 45 1 13.1546 -3.3950 2.0573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267702019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:48 Heat of formation + Delta-G solvation = -21.524286 kcal Electronic energy + Delta-G solvation = -27218.228790 eV Core-core repulsion = 23363.138512 eV Total energy + Delta-G solvation = -3855.090278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.47751 -40.56739 -39.51039 -36.77452 -35.11805 -34.61955 -33.80416 -32.71287 -30.86844 -30.36450 -28.35446 -27.69698 -26.28730 -25.65496 -22.63363 -21.97710 -21.58951 -20.76671 -20.17469 -19.47735 -18.41146 -18.04571 -17.79865 -17.34262 -16.91657 -16.73840 -16.54656 -16.14783 -16.10272 -15.82148 -15.20840 -14.91632 -14.62053 -14.43605 -14.18590 -14.06727 -13.97849 -13.65430 -13.43797 -13.22227 -13.18477 -13.02774 -12.92084 -12.73309 -12.67290 -12.49834 -12.32095 -12.11069 -12.03500 -11.75903 -11.17514 -11.06508 -10.93514 -10.48436 -10.33867 -10.03122 -9.87506 -9.33365 -8.72208 -8.37857 -6.17089 1.16440 1.17733 1.40274 1.41025 1.48206 1.52970 1.60430 1.94051 2.21747 2.23813 2.84383 2.96306 3.14472 3.31620 3.40504 3.65439 3.71885 3.77155 3.88729 3.92268 4.06352 4.13510 4.16970 4.24316 4.31070 4.38639 4.44429 4.56020 4.58391 4.69495 4.75751 4.80968 4.86364 4.95238 4.99752 5.03398 5.18447 5.37870 5.38534 5.60178 5.65333 5.76809 5.77775 6.16186 6.31170 6.53564 7.02445 7.03243 7.23351 8.71449 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009049 B = 0.003169 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.533296 B = 8833.382390 C =11424.500816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.185 4.185 3 C 0.149 3.851 4 N -0.720 5.720 5 C 0.516 3.484 6 O -0.558 6.558 7 C 0.017 3.983 8 N -0.499 5.499 9 C 0.035 3.965 10 C 0.100 3.900 11 H 0.122 0.878 12 C -0.124 4.124 13 C 0.069 3.931 14 H 0.148 0.852 15 C 0.057 3.943 16 N -0.618 5.618 17 C 0.551 3.449 18 O -0.561 6.561 19 C -0.120 4.120 20 S -0.144 6.144 21 C -0.547 4.547 22 H 0.081 0.919 23 C 0.015 3.985 24 N -0.910 5.910 25 Si 0.999 3.001 26 H -0.268 1.268 27 H -0.276 1.276 28 H -0.257 1.257 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.414 0.586 35 H 0.075 0.925 36 H 0.127 0.873 37 H 0.057 0.943 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.311 10.274 -2.817 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.203 4.203 3 C 0.026 3.974 4 N -0.374 5.374 5 C 0.303 3.697 6 O -0.436 6.436 7 C -0.114 4.114 8 N -0.223 5.223 9 C -0.093 4.093 10 C -0.002 4.002 11 H 0.140 0.860 12 C -0.162 4.162 13 C -0.039 4.039 14 H 0.165 0.835 15 C -0.067 4.067 16 N -0.354 5.354 17 C 0.340 3.660 18 O -0.440 6.440 19 C -0.272 4.272 20 S 0.083 5.917 21 C -0.695 4.695 22 H 0.099 0.901 23 C -0.190 4.190 24 N -0.547 5.547 25 Si 0.820 3.180 26 H -0.194 1.194 27 H -0.201 1.201 28 H -0.181 1.181 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.141 0.859 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.250 0.750 35 H 0.093 0.907 36 H 0.145 0.855 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.392 11.540 -1.868 27.049 hybrid contribution 0.145 -2.373 -1.352 2.735 sum -24.247 9.167 -3.219 26.121 Atomic orbital electron populations 1.24163 0.95619 1.03232 0.96699 1.22973 0.96479 0.97584 1.03311 1.20376 0.91508 0.96334 0.89185 1.45945 1.40474 1.19850 1.31086 1.20630 0.81030 0.82075 0.85973 1.90648 1.68670 1.36167 1.48077 1.22426 0.96756 0.93315 0.98888 1.64904 1.23580 1.30681 1.03166 1.23708 0.88626 1.02883 0.94082 1.24259 0.97289 0.83261 0.95420 0.85982 1.23970 0.97047 0.98307 0.96870 1.24821 0.92080 0.92362 0.94666 0.83475 1.23468 0.89928 1.01220 0.92038 1.49268 1.28063 1.22259 1.35816 1.19698 0.79412 0.83624 0.83290 1.90690 1.43048 1.76455 1.33760 1.23294 1.03988 0.97093 1.02779 1.85553 1.34657 1.23188 1.48281 1.23164 1.17833 1.07910 1.20605 0.90135 1.26129 0.93771 1.01301 0.97800 1.70174 1.15363 1.34600 1.34526 0.84953 0.79232 0.76268 0.77533 1.19350 1.20093 1.18135 0.86561 0.87916 0.85860 0.91641 0.91642 0.74971 0.90717 0.85534 0.92412 0.86801 0.89624 0.86759 0.90346 0.90436 0.88018 0.88222 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 14.32 67.78 0.97 -0.30 16 2 C -0.19 -1.77 9.63 25.65 0.25 -1.52 16 3 C 0.15 1.97 6.11 85.64 0.52 2.49 16 4 N -0.72 -9.45 5.55 -466.79 -2.59 -12.04 16 5 C 0.52 9.26 7.49 87.66 0.66 9.91 16 6 O -0.56 -13.66 14.02 -3.01 -0.04 -13.70 16 7 C 0.02 0.27 4.65 85.56 0.40 0.67 16 8 N -0.50 -9.20 5.16 -844.18 -4.36 -13.55 16 9 C 0.04 0.66 6.28 87.08 0.55 1.20 16 10 C 0.10 2.27 5.23 46.92 0.25 2.51 16 11 H 0.12 2.95 8.06 -2.39 -0.02 2.93 16 12 C -0.12 -2.21 6.80 33.46 0.23 -1.99 16 13 C 0.07 1.32 4.15 46.85 0.19 1.52 16 14 H 0.15 3.07 6.42 -2.39 -0.02 3.05 16 15 C 0.06 1.27 5.62 87.17 0.49 1.76 16 16 N -0.62 -17.42 2.95 -768.40 -2.26 -19.68 16 17 C 0.55 21.40 7.91 87.66 0.69 22.09 16 18 O -0.56 -26.61 16.21 -3.04 -0.05 -26.66 16 19 C -0.12 -4.98 5.44 71.24 0.39 -4.59 16 20 S -0.14 -8.07 20.57 -56.49 -1.16 -9.23 16 21 C -0.55 -31.31 9.50 67.95 0.65 -30.67 16 22 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 23 C 0.01 0.85 5.49 84.86 0.47 1.31 16 24 N -0.91 -55.76 13.22 21.65 0.29 -55.47 16 25 Si 1.00 43.27 29.55 68.60 2.03 45.30 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 28 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 29 H 0.12 0.64 8.06 -2.91 -0.02 0.62 16 30 H 0.10 0.76 7.84 -2.91 -0.02 0.73 16 31 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 32 H 0.07 0.95 7.79 -2.39 -0.02 0.93 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.41 3.50 8.46 -92.71 -0.78 2.71 16 35 H 0.08 1.23 5.65 -2.39 -0.01 1.22 16 36 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.19 7.62 -2.39 -0.02 1.17 16 38 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.11 1.67 8.14 -2.39 -0.02 1.66 16 41 H 0.08 1.67 5.21 -2.39 -0.01 1.66 16 42 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 44 H 0.10 3.86 8.14 -2.40 -0.02 3.84 16 45 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -78.87 381.62 -1.24 -80.10 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.22 Total: 20.54 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 6.69 Total: 4.40 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -8.92 Total: -100.75 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.09 Total: -40.36 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.16 Total: -9.23 kcal Total: -78.87 -1.24 -80.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267702019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.578 kcal (2) G-P(sol) polarization free energy of solvation -78.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds