Wall clock time and date at job start Wed Apr 1 2020 01:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21622 * 120.00419 * 0.02562 * 7 6 5 9 9 C 1.47274 * 119.99784 * 180.02562 * 7 6 5 10 10 C 1.35197 * 123.13997 * 179.70728 * 9 7 6 11 11 S 1.70947 * 108.82834 * 179.90162 * 10 9 7 12 12 C 1.70772 * 91.12596 * 0.30283 * 11 10 9 13 13 C 1.50694 * 124.71936 * 179.82535 * 12 11 10 14 14 H 1.09001 * 110.33145 * 197.24539 * 13 12 11 15 15 C 1.54478 * 110.37712 * 74.99814 * 13 12 11 16 16 C 1.54509 * 104.06515 * 217.19124 * 15 13 12 17 17 C 1.54474 * 104.06088 * 359.97438 * 16 15 13 18 18 O 1.44425 * 110.37065 * 319.61514 * 13 12 11 19 19 N 1.28650 * 110.55902 * 359.82025 * 12 11 10 20 20 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 21 21 C 1.36943 * 119.99752 * 274.72222 * 20 3 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 3 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 3 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47294 * 90.00155 * 25 23 21 27 27 H 1.48499 * 109.47218 * 210.00015 * 25 23 21 28 28 H 1.48496 * 109.47166 * 329.99846 * 25 23 21 29 29 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 30 30 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 32 32 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 33 33 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 34 34 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 35 35 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 36 36 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 37 37 H 1.08005 * 125.59248 * 0.02562 * 10 9 7 38 38 H 1.09006 * 110.50948 * 335.83849 * 15 13 12 39 39 H 1.09000 * 110.51323 * 98.40536 * 15 13 12 40 40 H 1.08998 * 110.50831 * 118.64208 * 16 15 13 41 41 H 1.08999 * 110.50895 * 241.21695 * 16 15 13 42 42 H 1.09003 * 110.37540 * 142.80816 * 17 16 15 43 43 H 1.09000 * 110.37544 * 265.03854 * 17 16 15 44 44 H 0.97001 * 120.00384 * 95.00578 * 20 3 2 45 45 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1657 2.1458 -0.2597 9 6 5.8867 4.4425 0.0340 10 6 7.1990 4.7608 -0.0317 11 16 7.3662 6.4525 0.1486 12 6 5.6761 6.6362 0.3101 13 6 4.9722 7.9514 0.5234 14 1 3.9607 7.7840 0.8936 15 6 4.9363 8.7617 -0.7913 16 6 5.1326 10.2251 -0.3359 17 6 5.2631 10.1258 1.2001 18 8 5.7171 8.7766 1.4453 19 7 5.0874 5.4955 0.2243 20 7 1.6525 2.0974 1.2518 21 6 0.4178 2.6784 1.3668 22 1 -0.2719 2.6498 0.5362 23 6 0.0527 3.3040 2.5509 24 7 0.8936 3.3393 3.5630 25 14 -1.6317 4.0959 2.7081 26 1 -2.6015 3.0979 3.2266 27 1 -1.5534 5.2440 3.6467 28 1 -2.0795 4.5755 1.3759 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9955 0.8311 0.6660 35 1 3.8500 1.0376 -1.0960 36 1 3.4412 3.5482 0.1314 37 1 8.0090 4.0612 -0.1766 38 1 5.7478 8.4550 -1.4512 39 1 3.9742 8.6401 -1.2888 40 1 6.0411 10.6417 -0.7706 41 1 4.2676 10.8294 -0.6092 42 1 5.9963 10.8447 1.5660 43 1 4.2967 10.2956 1.6749 44 1 2.2720 2.1232 1.9978 45 1 0.6383 3.7761 4.3906 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269403446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:38 Heat of formation + Delta-G solvation = -32.007647 kcal Electronic energy + Delta-G solvation = -27128.548240 eV Core-core repulsion = 23273.003370 eV Total energy + Delta-G solvation = -3855.544870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.48755 -39.60140 -38.38453 -36.62106 -33.66634 -32.52764 -32.32446 -31.72134 -29.73621 -28.85904 -28.12628 -25.58828 -24.06443 -23.24213 -22.33048 -21.78919 -20.91013 -20.06189 -19.59294 -18.57378 -17.24521 -16.70538 -16.45238 -16.32856 -15.54951 -15.40762 -15.27223 -14.94908 -14.31279 -14.19848 -14.02756 -13.80777 -13.54174 -13.13704 -13.06828 -12.95233 -12.57763 -12.18191 -12.08628 -11.97741 -11.89245 -11.65805 -11.41397 -11.03896 -10.93400 -10.87084 -10.71893 -10.41337 -10.24839 -10.17412 -10.00462 -9.89011 -9.75908 -9.68031 -9.50053 -8.99167 -8.91490 -8.54866 -6.98740 -5.76370 -3.05592 0.46463 1.16163 1.59486 2.00550 3.24730 3.41937 3.47555 3.49151 3.59729 3.65819 4.07129 4.25600 4.54034 4.57840 4.62804 4.82586 4.96266 5.04135 5.17621 5.28866 5.38385 5.43652 5.45215 5.48535 5.50314 5.59825 5.64205 5.68741 5.82231 5.95827 5.99088 5.99418 6.18185 6.42842 6.45424 6.57285 6.60483 6.62883 6.90425 7.04997 7.26675 7.39249 7.70261 8.00894 8.40376 8.54146 9.52304 10.07526 10.43331 11.45541 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009407 B = 0.003665 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.714050 B = 7638.980775 C = 9941.344932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.113 3.887 6 N -0.690 5.690 7 C 0.589 3.411 8 O -0.550 6.550 9 C 0.019 3.981 10 C -0.233 4.233 11 S 0.232 5.768 12 C 0.025 3.975 13 C 0.152 3.848 14 H 0.108 0.892 15 C -0.145 4.145 16 C -0.154 4.154 17 C 0.045 3.955 18 O -0.366 6.366 19 N -0.422 5.422 20 N -0.721 5.721 21 C -0.237 4.237 22 H 0.073 0.927 23 C -0.010 4.010 24 N -0.928 5.928 25 Si 0.902 3.098 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.282 1.282 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.420 0.580 37 H 0.190 0.810 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.067 0.933 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.917 11.896 -9.826 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.012 4.012 6 N -0.341 5.341 7 C 0.371 3.629 8 O -0.430 6.430 9 C -0.117 4.117 10 C -0.375 4.375 11 S 0.489 5.511 12 C -0.254 4.254 13 C 0.091 3.909 14 H 0.126 0.874 15 C -0.184 4.184 16 C -0.192 4.192 17 C -0.032 4.032 18 O -0.284 6.284 19 N -0.138 5.138 20 N -0.363 5.363 21 C -0.367 4.367 22 H 0.091 0.909 23 C -0.206 4.206 24 N -0.576 5.576 25 Si 0.733 3.267 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.258 0.742 37 H 0.207 0.793 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.115 0.885 43 H 0.085 0.915 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.666 11.903 -9.741 19.925 hybrid contribution -1.589 -0.193 0.392 1.648 sum 11.077 11.710 -9.349 18.634 Atomic orbital electron populations 1.21766 0.95720 0.99602 1.03253 1.22069 0.96978 0.98350 1.00024 1.20557 0.89750 0.92873 0.91519 0.92829 1.21759 0.95881 0.82303 1.01234 1.45839 1.06734 1.11239 1.70272 1.17033 0.82981 0.85527 0.77325 1.90769 1.56490 1.44298 1.51405 1.20467 0.89328 0.94369 1.07511 1.26705 1.01581 1.01779 1.07473 1.82764 1.07655 0.98523 1.62120 1.26574 0.95474 0.97163 1.06215 1.21272 0.94959 0.84638 0.90036 0.87427 1.23024 1.04192 0.94291 0.96921 1.22955 1.03301 0.96662 0.96272 1.23467 1.00726 0.84092 0.94923 1.89175 1.63169 1.17447 1.58619 1.66848 1.37032 0.97107 1.12841 1.42445 1.16942 1.65692 1.11208 1.19188 0.91961 1.27545 0.98054 0.90948 1.24720 0.97952 1.01507 0.96457 1.69668 1.35072 1.48798 1.04041 0.86275 0.84302 0.78842 0.77275 1.21808 1.21902 1.20802 0.94123 0.94884 0.89664 0.93835 0.92495 0.91588 0.91641 0.74167 0.79304 0.90350 0.89152 0.90329 0.89952 0.88537 0.91476 0.78066 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.18 37.16 0.34 -2.30 16 2 C -0.13 -2.35 5.61 -26.73 -0.15 -2.50 16 3 C 0.16 3.14 2.59 -67.93 -0.18 2.96 16 4 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 5 C 0.11 2.02 5.23 -4.04 -0.02 2.00 16 6 N -0.69 -12.95 5.38 -61.43 -0.33 -13.28 16 7 C 0.59 11.04 7.80 -12.59 -0.10 10.94 16 8 O -0.55 -11.20 16.71 5.26 0.09 -11.12 16 9 C 0.02 0.32 6.70 -84.53 -0.57 -0.25 16 10 C -0.23 -3.17 10.62 29.65 0.31 -2.85 16 11 S 0.23 2.59 22.69 -107.50 -2.44 0.15 16 12 C 0.03 0.35 6.26 -13.61 -0.09 0.26 16 13 C 0.15 1.79 3.82 -27.11 -0.10 1.68 16 14 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 15 C -0.15 -1.24 6.62 -25.16 -0.17 -1.41 16 16 C -0.15 -1.00 7.09 -25.17 -0.18 -1.18 16 17 C 0.04 0.35 7.63 37.93 0.29 0.64 16 18 O -0.37 -4.25 11.13 -35.23 -0.39 -4.64 16 19 N -0.42 -6.99 10.12 -8.51 -0.09 -7.08 16 20 N -0.72 -17.05 4.50 -53.43 -0.24 -17.29 16 21 C -0.24 -6.15 7.76 -15.06 -0.12 -6.27 16 22 H 0.07 1.84 7.33 -52.49 -0.38 1.45 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 24 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 25 Si 0.90 21.85 29.55 -169.99 -5.02 16.83 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.82 6.01 -51.93 -0.31 1.51 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 36 H 0.42 8.36 7.66 -40.82 -0.31 8.04 16 37 H 0.19 2.26 8.03 -52.48 -0.42 1.84 16 38 H 0.08 0.64 7.87 -51.93 -0.41 0.23 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.39 10.05 7.80 -40.82 -0.32 9.73 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -31.50 385.68 -9.49 -40.99 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -6.79 Total: 14.94 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -0.81 Total: 1.36 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: 0.07 Total: -64.33 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.30 Total: -15.75 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.44 Total: 0.15 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.50 -9.49 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269403446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.982 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds