Wall clock time and date at job start Wed Apr 1 2020 01:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47094 * 2 1 4 4 H 1.09009 * 109.46555 * 305.00189 * 3 2 1 5 5 C 1.52998 * 109.47264 * 185.00363 * 3 2 1 6 6 N 1.46496 * 109.46846 * 184.99738 * 5 3 2 7 7 C 1.34777 * 119.99613 * 179.97438 * 6 5 3 8 8 O 1.21691 * 120.00306 * 0.02562 * 7 6 5 9 9 C 1.46686 * 119.99903 * 180.02562 * 7 6 5 10 10 C 1.35659 * 126.12948 * 0.03033 * 9 7 6 11 11 N 1.30944 * 114.19176 * 179.97438 * 10 9 7 12 12 C 1.29432 * 117.36137 * 359.97438 * 11 10 9 13 13 C 1.50705 * 124.80319 * 180.02562 * 12 11 10 14 14 H 1.08993 * 110.33055 * 197.22697 * 13 12 11 15 15 C 1.54479 * 110.36815 * 74.97493 * 13 12 11 16 16 C 1.54513 * 104.06197 * 217.18896 * 15 13 12 17 17 C 1.54479 * 104.06039 * 0.02562 * 16 15 13 18 18 O 1.44422 * 104.80734 * 23.97973 * 17 16 15 19 19 S 1.70946 * 110.39342 * 359.72625 * 12 11 10 20 20 N 1.46501 * 109.46983 * 64.99890 * 3 2 1 21 21 C 1.36940 * 119.99957 * 275.00096 * 20 3 2 22 22 H 1.08002 * 119.99998 * 0.02562 * 21 20 3 23 23 C 1.38814 * 119.99726 * 179.97438 * 21 20 3 24 24 N 1.31617 * 119.99824 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99727 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47155 * 90.00250 * 25 23 21 27 27 H 1.48507 * 109.46616 * 209.99570 * 25 23 21 28 28 H 1.48496 * 109.47352 * 329.99726 * 25 23 21 29 29 H 1.08997 * 109.46762 * 299.99587 * 1 2 3 30 30 H 1.08993 * 109.47218 * 60.00246 * 1 2 3 31 31 H 1.09001 * 109.46819 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47185 * 240.00288 * 2 1 3 33 33 H 1.08997 * 109.47673 * 119.99937 * 2 1 3 34 34 H 1.09002 * 109.47106 * 64.99789 * 5 3 2 35 35 H 1.08999 * 109.46731 * 304.99677 * 5 3 2 36 36 H 0.96996 * 120.00516 * 0.02562 * 6 5 3 37 37 H 1.07998 * 122.90764 * 0.02562 * 10 9 7 38 38 H 1.08993 * 110.51729 * 335.83413 * 15 13 12 39 39 H 1.08999 * 110.50842 * 98.41534 * 15 13 12 40 40 H 1.08996 * 110.51227 * 118.64670 * 16 15 13 41 41 H 1.08997 * 110.51565 * 241.22449 * 16 15 13 42 42 H 1.09004 * 110.37016 * 142.80971 * 17 16 15 43 43 H 1.08995 * 110.37718 * 265.03164 * 17 16 15 44 44 H 0.96997 * 119.99910 * 95.00364 * 20 3 2 45 45 H 0.96998 * 119.99600 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1258 6 7 4.0629 2.8169 -0.0061 7 6 5.3856 3.0630 -0.0860 8 8 6.1660 2.1453 -0.2581 9 6 5.8845 4.4372 0.0344 10 6 5.1300 5.5480 0.2276 11 7 5.8195 6.6587 0.3018 12 6 7.1055 6.5695 0.1857 13 6 8.0576 7.7362 0.2455 14 1 9.0248 7.4575 -0.1725 15 6 8.2214 8.2224 1.7026 16 6 8.3252 9.7588 1.5763 17 6 8.2112 10.0191 0.0579 18 8 7.5083 8.8695 -0.4619 19 16 7.5719 4.9400 -0.0366 20 7 1.6524 2.0975 1.2518 21 6 0.4156 2.6735 1.3688 22 1 -0.2743 2.6445 0.5383 23 6 0.0481 3.2936 2.5551 24 7 -1.1408 3.8467 2.6677 25 14 1.2412 3.3429 3.9916 26 1 2.0762 4.5676 3.8998 27 1 0.4802 3.3573 5.2668 28 1 2.1155 2.1434 3.9504 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8498 1.0378 -1.0961 35 1 3.9954 0.8312 0.6658 36 1 3.4410 3.5484 0.1314 37 1 4.0539 5.5187 0.3137 38 1 7.3510 7.9461 2.2977 39 1 9.1299 7.8111 2.1426 40 1 7.5061 10.2420 2.1088 41 1 9.2853 10.1092 1.9552 42 1 7.6410 10.9291 -0.1294 43 1 9.2021 10.0944 -0.3897 44 1 2.2719 2.1232 1.9978 45 1 -1.3974 4.2804 3.4966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269482318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:52 Heat of formation + Delta-G solvation = -48.959228 kcal Electronic energy + Delta-G solvation = -26777.233141 eV Core-core repulsion = 22920.953195 eV Total energy + Delta-G solvation = -3856.279946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.47295 -40.68978 -39.76784 -38.41277 -35.40441 -34.23283 -33.30275 -32.66720 -32.08115 -30.57761 -29.05725 -26.70578 -25.36613 -24.32935 -23.91260 -22.58384 -22.24089 -21.75348 -20.65793 -19.79849 -19.35918 -18.40769 -17.40607 -17.14560 -16.97495 -16.63349 -16.40966 -16.21305 -15.98642 -15.58003 -15.27922 -15.06493 -14.70295 -14.68756 -14.63564 -14.45464 -14.14017 -14.04557 -13.10761 -12.93534 -12.86940 -12.78034 -12.76349 -12.70699 -12.39837 -12.27597 -12.10456 -11.91537 -11.66361 -11.64098 -11.54217 -11.41303 -10.95161 -10.92624 -10.71672 -10.65272 -10.24604 -10.00985 -9.30461 -7.96246 -5.28160 -0.97993 -0.07053 0.44675 1.25113 1.38189 1.39157 1.45866 2.00214 2.14533 2.50272 2.73252 3.01880 3.35272 3.53408 3.59316 3.66562 3.68667 3.85670 3.90082 4.01245 4.11740 4.22069 4.30547 4.33184 4.44095 4.55241 4.65342 4.70185 4.79823 4.81432 4.85725 4.94006 5.02502 5.06786 5.08840 5.13606 5.19346 5.34781 5.51822 5.73335 5.75489 5.87178 6.26356 6.32835 6.49063 6.96260 7.12570 7.87035 8.05133 9.24828 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.002987 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.782893 B = 9370.355590 C =10832.550858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.167 3.833 4 H 0.062 0.938 5 C 0.121 3.879 6 N -0.701 5.701 7 C 0.594 3.406 8 O -0.572 6.572 9 C -0.316 4.316 10 C 0.097 3.903 11 N -0.484 5.484 12 C 0.036 3.964 13 C 0.146 3.854 14 H 0.124 0.876 15 C -0.143 4.143 16 C -0.147 4.147 17 C 0.036 3.964 18 O -0.384 6.384 19 S 0.281 5.719 20 N -0.747 5.747 21 C -0.203 4.203 22 H 0.070 0.930 23 C -0.057 4.057 24 N -0.981 5.981 25 Si 0.936 3.064 26 H -0.282 1.282 27 H -0.305 1.305 28 H -0.259 1.259 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.411 0.589 37 H 0.187 0.813 38 H 0.059 0.941 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.362 0.638 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.410 6.923 -5.615 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.059 3.941 4 H 0.080 0.920 5 C -0.003 4.003 6 N -0.352 5.352 7 C 0.380 3.620 8 O -0.453 6.453 9 C -0.440 4.440 10 C -0.063 4.063 11 N -0.198 5.198 12 C -0.238 4.238 13 C 0.084 3.916 14 H 0.142 0.858 15 C -0.183 4.183 16 C -0.185 4.185 17 C -0.040 4.040 18 O -0.304 6.304 19 S 0.540 5.460 20 N -0.391 5.391 21 C -0.334 4.334 22 H 0.088 0.912 23 C -0.249 4.249 24 N -0.633 5.633 25 Si 0.766 3.234 26 H -0.209 1.209 27 H -0.233 1.233 28 H -0.184 1.184 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.248 0.752 37 H 0.204 0.796 38 H 0.078 0.922 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.117 0.883 43 H 0.105 0.895 44 H 0.196 0.804 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 25.362 6.337 -6.040 26.830 hybrid contribution -1.523 0.500 1.524 2.212 sum 23.839 6.837 -4.516 25.207 Atomic orbital electron populations 1.21695 0.96376 1.00459 1.01614 1.21958 0.96112 0.96827 1.01857 1.20730 0.90993 0.93562 0.88834 0.91984 1.21749 0.93910 0.81828 1.02854 1.45799 1.06286 1.11436 1.71696 1.16803 0.82725 0.85982 0.76496 1.90798 1.56476 1.46012 1.52049 1.25831 0.99307 0.98955 1.19921 1.22451 1.02269 0.85055 0.96514 1.66097 1.06114 1.30777 1.16822 1.27772 0.94483 1.00242 1.01312 1.21791 0.92389 0.82959 0.94417 0.85826 1.23039 1.04062 0.97013 0.94153 1.22937 1.04472 0.94362 0.96726 1.23706 0.98156 0.88961 0.93149 1.89261 1.62756 1.15992 1.62367 1.83596 1.02581 0.98132 1.61679 1.42842 1.15411 1.67689 1.13108 1.18956 0.91389 1.24758 0.98315 0.91171 1.25254 0.97795 1.01639 1.00206 1.69843 1.21597 1.44640 1.27208 0.85698 0.79155 0.78392 0.80183 1.20892 1.23295 1.18405 0.93552 0.93884 0.92761 0.90060 0.92587 0.89124 0.91507 0.75161 0.79600 0.92161 0.86940 0.91122 0.87357 0.88324 0.89531 0.80447 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 9.18 71.98 0.66 -4.23 16 2 C -0.13 -3.79 5.61 30.60 0.17 -3.62 16 3 C 0.17 5.44 2.59 44.99 0.12 5.55 16 4 H 0.06 2.09 8.08 -2.38 -0.02 2.07 16 5 C 0.12 3.46 5.23 86.38 0.45 3.91 16 6 N -0.70 -20.93 5.37 -467.09 -2.51 -23.43 16 7 C 0.59 18.53 7.79 86.45 0.67 19.20 16 8 O -0.57 -20.32 16.97 -4.32 -0.07 -20.39 16 9 C -0.32 -8.85 6.48 23.88 0.15 -8.70 16 10 C 0.10 2.75 10.93 84.23 0.92 3.67 16 11 N -0.48 -14.00 10.47 -190.30 -1.99 -16.00 16 12 C 0.04 0.84 6.24 88.46 0.55 1.39 16 13 C 0.15 2.50 3.81 30.35 0.12 2.61 16 14 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 15 C -0.14 -1.95 6.62 31.61 0.21 -1.74 16 16 C -0.15 -1.56 7.09 31.61 0.22 -1.33 16 17 C 0.04 0.45 7.63 72.48 0.55 1.01 16 18 O -0.38 -8.24 11.30 -148.98 -1.68 -9.93 16 19 S 0.28 6.14 23.01 -56.49 -1.30 4.84 16 20 N -0.75 -30.63 4.31 -322.92 -1.39 -32.02 16 21 C -0.20 -10.36 8.24 84.03 0.69 -9.67 16 22 H 0.07 3.92 7.55 -2.91 -0.02 3.90 16 23 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 24 N -0.98 -60.55 13.97 21.65 0.30 -60.24 16 25 Si 0.94 44.28 27.74 68.60 1.90 46.18 16 26 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 28 H -0.26 -11.27 6.52 99.48 0.65 -10.62 16 29 H 0.05 1.96 5.99 -2.39 -0.01 1.95 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.41 12.36 6.85 -92.71 -0.63 11.72 16 37 H 0.19 5.06 7.15 -2.91 -0.02 5.04 16 38 H 0.06 1.13 7.86 -2.39 -0.02 1.11 16 39 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.36 14.97 5.66 -92.71 -0.52 14.44 16 45 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -71.39 381.96 -0.98 -72.37 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: -0.20 Total: 33.31 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.96 Total: 5.31 kcal Atomic # 7 Polarization: -126.10 SS G_CDS: -5.59 Total: -131.70 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.76 Total: -30.32 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.90 Total: 46.18 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -1.30 Total: 4.84 kcal Total: -71.39 -0.98 -72.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269482318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.408 kcal (2) G-P(sol) polarization free energy of solvation -71.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds